FCN1 (ficolin (collagen/fibrinogen domain containing) 1)

Gene: FCN1 (ficolin (collagen/fibrinogen domain containing) 1) Sus scrofa

Analyze

No known orthologs.

Symbol:

FCN1

Name:

ficolin (collagen/fibrinogen domain containing) 1

RGD ID:

13966840

Description:

ENCODES a protein that exhibits antigen binding (inferred); carbohydrate binding (inferred); carbohydrate derivative binding (inferred); INVOLVED IN complement activation, lectin pathway (inferred); innate immune response (inferred); FOUND IN collagen trimer (inferred); collagen-containing extracellular matrix (inferred); extracellular region (inferred)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

FCNB; ficolin B; ficolin-1; ficolin-A; ficolin-alpha

RGD Orthologs

Alliance Genes

More Info

homologs ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	1	274,125,666 - 274,132,917 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	308,216,807 - 308,224,034 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

complement activation, lectin pathway (IBA,IEA)

innate immune response (IEA)

Cellular Component

collagen trimer (IEA)

collagen-containing extracellular matrix (IBA,IEA)

extracellular region (IEA)

extracellular space (IBA,IEA)

plasma membrane (IEA)

Molecular Function

antigen binding (IBA,IEA)

carbohydrate binding (IEA)

carbohydrate derivative binding (IBA,IEA)

metal ion binding (IEA)

signaling receptor binding (IBA,IEA)

References

Additional References at PubMed

PMID:7686157	PMID:14681463	PMID:17145712	PMID:30032202

Genomics

Variants

Variants in FCN1
312 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	hemolymphoid system	musculoskeletal system	nervous system	renal system	respiratory system
High
Medium			2				2
Low	3	1	1
Below cutoff	5	1	2	2	2	1	1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_214160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013988963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021082862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021082870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002341444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK232015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK348880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU315908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP325143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01017382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L12345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

NM_214160 ⟹ NP_999325

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	274,125,819 - 274,132,798 (-)	NCBI

Sequence:

show sequence

AAGCATGAGGACATGGAGCTGAGCAGAGTTGCCGTGGCCCTGGGGCCCACTGGCCAGCTCCTCC
TGTTCCTGAGCTTCCAGACCCTGGCTGCCCAGGCTGCCGACACCTGTCCAGAGGTCAAGGTGGT
GGGTCTGGAGGGCTCAGACAAGCTCTCCATCCTCCGAGGCTGCCCGGGGCTGCCTGGAGCCGCA
GGGCCTAAGGGAGAGGCGGGCGCCAATGGACCGAAGGGAGAGCGAGGCTCCCCCGGCGTCGTCG
GGAAGGCAGGACCGGCTGGGCCCAAAGGAGACCGAGGGGAGAAGGGCGCGCGTGGAGAGAAAGG
AGAGCCTGGGCAGCTCCAGTCATGTGCCACAGGACCTCGGACCTGCAAGGAGCTGCTGACCAGG
GGGCACTTTCTGAGCGGCTGGCACACCATCTACCTGCCGGACTGCCAGCCCCTGACGGTGCTGT
GTGACATGGACACGGATGGCGGGGGGTGGACCGTTTTCCAGCGCAGGAGCGACGGGTCGGTGGA
CTTCTACCGGGACTGGGCCGCGTACAAGCGGGGCTTCGGCAGTCAGCTGGGAGAGTTCTGGCTG
GGGAACGACCACATCCACGCCCTGACGGCCCAGGGAACCAGTGAGCTCCGGGTGGACCTCGTGG
ACTTCGAGGGCAACCACCAGTTTGCCAAGTACAGGTCCTTCCAGGTGGCAGGCGAGGCAGAGAA
GTACAAGCTGGTCCTGGGAGGCTTCCTGGAGGGCAATGCAGGTGACTCCCTGTCATCCCACAGA
GACCAGTTCTTCTCCACCAAAGACCAGGACAACGACAACCATTCGGGAAACTGCGCGGAGCAGT
ACCACGGCGCCTGGTGGTACAACGCCTGCCACTCCTCCAACCTGAACGGCCGCTACCTCCGGGG
ACTGCACACCAGCTATGCCAACGGCGTCAACTGGAGGTCGGGGAGAGGGTACAACTACAGCTAC
CAGGTGTCGGAGATGAAAGTGCGTCTCACGTAGGGGGGGCCCGGCCCGGCTCCTCCCCATCCAC
CGGCCGGCAGCCTCCA

hide sequence

RefSeq Acc Id:

XM_013988963 ⟹ XP_013844417

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	274,125,666 - 274,132,847 (-)	NCBI

Sequence:

show sequence

AGGCTCAGGCTGCACTGGCTTCTCCTGCCCACACGAGCGAGAGAGATCAAAGACTGAGGACATG
GAGCTGAGCAGAGTTGCCGTGGCCCTGGGGCCCACTGGCCAGCTCCTCCTGTTCCTGAGCTTCC
AGACCCTGGCTGCCCAGGCTGCCGACACCTGTCCAGGAGAGCGAGGCTCCCCCGGCGTCGTCGG
GAAGGCAGGACCGGCTGGGCCCAAAGGAGACCGAGGGGAGAAGGGCGCGCGTGGAGAGAAAGGA
GAGCCTGCGCAGCTCCAGTCATGTGCCACAGGACCTCGGACCTGCAAGGAGCTGCTGACCAGGG
GGCACTTTCTGAGCGGCTGGCACACCATCTACCTGCCGGACTGCCAGCCCCTGACGGTGCTGTG
TGACATGGACACGGATGGCGGGGGGTGGACCGTTTTCCAGCGCAGGAGCGACGGGTCGGTGGAC
TTCTACCGGGACTGGGCCGCGTACAAGCGGGGCTTCGGCAGTCAGCTGGGAGAGTTCTGGCTGG
GGAACGACCACATCCACGCCCTGACGGCCCAGGGAACCAGTGAGCTCCGGGTGGACCTCGTGGA
CTTCGAGGGCAACCACCAGTTTGCCAAGTACAGGTCCTTCCAGGTGGCAGGCGAGGCAGAGAAG
TACAAGCTGGTCCTGGGAGGCTTCCTGGAGGGCAATGCAGGTGACTCCCTGTCATCCCACAGAG
ACCAGTTCTTCTCCACCAAAGACCAGGACAACGACAACCATTCGGGAAACTGCGCGGAGCAGTA
CCACGGCGCCTGGTGGTACAACGCCTGCCACTCCTCCAACCTGAACGGCCGCTACCTCCGGGGA
CTGCACACCAGCTATGCCAACGGCGTCAACTGGAGGTCGGGGAGAGGGTACAACTACAGCTACC
AGGTGTCGGAGATGAAAGTGCGTCTCACGTAGGTGGGGCCCGGCCCGGCTCCTCCCCATCCACC
GGCCTGCAGCCTCCAGAAGCTTCGCTCCGTTCTGCCAGCATCTCGTCATCCCTGCCACCCCCTC
ACTCCCACTCCATAAACCTGCCTTGCCCAGACCCTTCTCTCCCATCAGTGTCTGAACGCATGTG
CCCCACGGCCTCACAGAGGAAGAATCACGTTTCAAAAGTG

hide sequence

RefSeq Acc Id:

XM_021082862 ⟹ XP_020938521

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	274,125,666 - 274,132,863 (-)	NCBI

Sequence:

show sequence

GGGAGTTGAGAAACCCAGGCTCAGGCTGCACTGGCTTCTCCTGCCCACACGAGCGAGAGAGATC
AAAGACTGAGGACATGGAGCTGAGCAGAGTTGCCGTGGCCCTGGGGCCCACTGGCCAGCTCCTC
CTGTTCCTGAGCTTCCAGACCCTGGCTGCCCAGGCTGCCGACACCTGTCCAGAGGTCAAGGTGG
TGGGTCTGGAGGGCTCGGACAAGCTCTCCATCCTTCGAGGCTGCCCGGGGCTGCCTGGAGCCAC
CGGGCCCAAGGGAGAGGCGGGCGCCAATGGACCGAAGGGAGAGCGAGGCTCCCCCGGCGTCGTC
GGGAAGGCAGGACCGGCTGGGCCCAAAGGAGACCGAGGGGAGAAGGGCGCGCGTGGAGAGAAAG
GAGAGCCTGCGCAGCTCCAGTCATGTGCCACAGGTGACTGCCCACACGCTGACCTCCAGACCTC
AGCCTGGACCCGCCCCTGCTGGGGAGAGGTCGACCAGAAGGCCAGCTGCACAGACTCACCTTCC
AGGATCCAAAGACAAAGCACTCTGCACCCATGTTACTCCTCAAAGAGTCAAGCGACCGGCAGCT
GCTGCCTGGATGACTCTAGCATGTTCCATGGCAATTCTGGAGGAGTTTATACCTGCCCCTGCAG
GGCCAGGTGCCCAGGAGGCTAAGTGGGGGCAGCCCAGGTGGACCGGGCTGGGCCATCGCAGCTG
GCTGGCCTGGGGGCTGCGGCCCTGCCCAGGCTGCAGGCTTCCCCTCCCCCAGCAGGGGTCCCTG
CGTCTCCCTGCCCCACCCCCACCCCCGCTGCCCCTGCCCAGGGCTCCGGCCCTGGCATCCACCT
CCCCGCTTCCCTTCCCAGGACCTCGGACCTGCAAGGAGCTGCTGACCAGGGGGCACTTTCTGAG
CGGCTGGCACACCATCTACCTGCCGGACTGCCAGCCCCTGACGGTGCTGTGTGACATGGACACG
GATGGCGGGGGGTGGACCGTTTTCCAGCGCAGGAGCGACGGGTCGGTGGACTTCTACCGGGACT
GGGCCGCGTACAAGCGGGGCTTCGGCAGTCAGCTGGGAGAGTTCTGGCTGGGGAACGACCACAT
CCACGCCCTGACGGCCCAGGGAACCAGTGAGCTCCGGGTGGACCTCGTGGACTTCGAGGGCAAC
CACCAGTTTGCCAAGTACAGGTCCTTCCAGGTGGCAGGCGAGGCAGAGAAGTACAAGCTGGTCC
TGGGAGGCTTCCTGGAGGGCAATGCAGGTGACTCCCTGTCATCCCACAGAGACCAGTTCTTCTC
CACCAAAGACCAGGACAACGACAACCATTCGGGAAACTGCGCGGAGCAGTACCACGGCGCCTGG
TGGTACAACGCCTGCCACTCCTCCAACCTGAACGGCCGCTACCTCCGGGGACTGCACACCAGCT
ATGCCAACGGCGTCAACTGGAGGTCGGGGAGAGGGTACAACTACAGCTACCAGGTGTCGGAGAT
GAAAGTGCGTCTCACGTAGGTGGGGCCCGGCCCGGCTCCTCCCCATCCACCGGCCTGCAGCCTC
CAGAAGCTTCGCTCCGTTCTGCCAGCATCTCGTCATCCCTGCCACCCCCTCACTCCCACTCCAT
AAACCTGCCTTGCCCAGACCCTTCTCTCCCATCAGTGTCTGAACGCATGTGCCCCACGGCCTCA
CAGAGGAAGAATCACGTTTCAAAAGTG

hide sequence

RefSeq Acc Id:

XM_021082870 ⟹ XP_020938529

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	274,125,666 - 274,132,895 (-)	NCBI

Sequence:

show sequence

GACCAAAGGCTGGAGGAAGTGGGCCTCCCCAGGGGAGTTGAGAAACCCAGGCTCAGGCTGCACT
GGCTTCTCCTGCCCACACGAGCGAGAGAGATCAAAGACTGAGGACATGGAGCTGAGCAGAGTTG
CCGTGGCCCTGGGGCCCACTGGCCAGCTCCTCCTGTTCCTGAGCTTCCAGACCCTGGCTGCCCA
GGCTGCCGACACCTGTCCAGAGGTCAAGGTGGTGGGTCTGGAGGGCTCGGACAAGCTCTCCATC
CTTCGAGGCTGCCCGGGGCTGCCTGGAGCCACCGGGCCCAAGGGAGAGGCGGGCGCCAATGGAC
CGAAGGGAGAGCGAGGCTCCCCCGGCGTCGTCGGGAAGGCAGGACCGGCTGGGCCCAAAGGAGA
CCGAGGGGAGAAGGGCGCGCGTGGAGAGAAAGGAGAGCCTGCGCAGCTCCAGTCATGTGCCACA
GGACCTCGGACCTGCAAGGAGCTGCTGACCAGGGGGCACTTTCTGAGCGGCTGGCACACCATCT
ACCTGCCGGACTGCCAGCCCCTGACGGTGCTGTGTGACATGGACACGGATGGCGGGGGGTGGAC
CGTTTTCCAGCGCAGGAGCGACGGGTCGGTGGACTTCTACCGGGACTGGGCCGCGTACAAGCGG
GGCTTCGGCAGTCAGCTGGGAGAGTTCTGGCTGGGGAACGACCACATCCACGCCCTGACGGCCC
AGGGAACCAGTGAGCTCCGGGTGGACCTCGTGGACTTCGAGGGCAACCACCAGTTTGCCAAGTA
CAGGTCCTTCCAGGTGGCAGGCGAGGCAGAGAAGTACAAGCTGGTCCTGGGAGGCTTCCTGGAG
GGCAATGCAGAGACCAGTTCTTCTCCACCAAAGACCAGGACAACGACAACCATTCGGGAAACTG
CGCGGAGCAGTACCACGGCGCCTGGTGGTACAACGCCTGCCACTCCTCCAACCTGAACGGCCGC
TACCTCCGGGGACTGCACACCAGCTATGCCAACGGCGTCAACTGGAGGTCGGGGAGAGGGTACA
ACTACAGCTACCAGGTGTCGGAGATGAAAGTGCGTCTCACGTAGGTGGGGCCCGGCCCGGCTCC
TCCCCATCCACCGGCCTGCAGCCTCCAGAAGCTTCGCTCCGTTCTGCCAGCATCTCGTCATCCC
TGCCACCCCCTCACTCCCACTCCATAAACCTGCCTTGCCCAGACCCTTCTCTCCCATCAGTGTC
TGAACGCATGTGCCCCACGGCCTCACAGAGGAAGAATCACGTTTCAAAAGTG

hide sequence

RefSeq Acc Id:

XR_002341444

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	274,125,666 - 274,132,917 (-)	NCBI

Sequence:

show sequence

ATCTGGGACCTGCTGCTGGTGTGACCAAAGGCTGGAGGAAGTGGGCCTCCCCAGGGGAGTTGAG
AAACCCAGGCTCAGGCTGCACTGGCTTCTCCTGCCCACACGAGCGAGAGAGATCAAAGACTGAG
GACATGGAGCTGAGCAGAGTTGCCGTGGCCCTGGGGCCCACTGGCCAGCTCCTCCTGTTCCTGA
GCTTCCAGACCCTGGCTGCCCAGGCTGCCGACACCTGTCCAGAGGTCAAGGTGGTGGGTCTGGA
GGGCTCGGACAAGCTCTCCATCCTTCGAGGCTGCCCGGGGCTGCCTGGAGCCACCGGGCCCAAG
GGAGAGGCGGGCGCCAATGGACCGAAGGGAGAGCGAGGCTCCCCCGGCGTCGTCGGGAAGGCAG
GACCGGCTGGGCCCAAAGGAGACCGAGGGGAGAAGGGCGCGCGTGGAGAGAAAGGAGAGCCTGC
GCAGCTCCAGTCATGTGCCACAGGTGACTGCCCACACGCTGACCTCCAGACCTCAGCCTGGACC
CGCCCCTGCTGGGGAGAGGTCGACCAGAAGGCCAGCTGCACAGACTCACCTTCCAGGATCCAAA
GACAAAGCACTCTGCACCCATGTTACTCCTCAAAGAGTCAAGCGACCGGCAGCTGCTGCCTGGA
TGACTCTAGCATGTTCCATGGCAATTCTGGAGGAGTTTATACCTGCCCCTGCAGGGCCAGGTGC
CCAGGAGGCTAAGTGGGGGCAGCCCAGGTGGACCGGGCTGGGCCATCGCAGCTGGCTGGCCTGG
GGGCTGCGGCCCTGCCCAGGCTGCAGGCTTCCCCTCCCCCAGCAGGGGTCCCTGCGTCTCCCTG
CCCCACCCCCACCCCCGCTGCCCCTGCCCAGGGCTCCGGCCCTGGCATCCACCTCCCCGCTTCC
CTTCCCAGGACCTCGGACCTGCAAGGAGCTGCTGACCAGGGGGCACTTTCTGAGCGGCTGGCAC
ACCATCTACCTGCCGGACTGCCAGCCCCTGACGGTGCTGTGTGACATGGACACGGATGGCGGGG
GGTGGACCGTGAGTGCGGGCTCCCCGAGACGGCCCCGGGGTCTTGGGCGGCGGTGGGCTGTGTG
CTCCTGGGAGTCACAGCGGCCGGGTCCTGCGCGGGTGGGAGGGCCCGTGTGGCCGAGGTCCCCG
TGCTGGGGACGGCGCCAGGCCCCCGTCTCCCGCCCTCTCCCACCCGCACAGGTTTTCCAGCGCA
GGAGCGACGGGTCGGTGGACTTCTACCGGGACTGGGCCGCGTACAAGCGGGGCTTCGGCAGTCA
GCTGGGAGAGTTCTGGCTGGGGAACGACCACATCCACGCCCTGACGGCCCAGGGTAGGGCCTTG
GCGGGGGCACTCCGACCTCCACGGGCCCCGGACCTCAGCCCCGGACCAGCCGGAGCCGGCGATG
CCGCCCCCCGCCCCCCGGGTGGTCCCCCCTGACCTCAGGAAGGCTTGTCACCGGGCCGGCCTGG
GACAGGTTTTCTCTTCGTCTCGCTGGGTGTTAGAATCAGAAGCTGGACTGTTAGGGTGTAGACC
TCTCTGGTCTCAGGGCCAAGTGTATCTTAAGCTGGGATGAGGAAGTGGGGGGCGTCTGGCCTGA
GGGGCCCTTCTCCCACTTCCAGCTGTCGGTCCTTCCTTGAGGCTGGGGTCTCAGGCCCCCCGAG
CCCCTCCCCGGCCTCTCTCAGTCAGGGCACGCGGGGGTCCCCCGAAGCCACCCTCCCCCTTCTC
TGTTCATAACCCCGGCTTCACGGCTGGTCCTGAGGAAAACCGAGAGGCTGTACATCCTTTTCGA
CATCTTCCGTGACCTTGAAGGTGACCTCTCGTGCCTGGAAAGTCGTGCCAAGGAAACTCTAGAC
ACAGTCACTTAGCACCCTGGCGGCGAGGGGACCAACAGCCACTTGCAGAATTTACAGTTTCCCA
GGGGAGAGAGGCTTCATTCCAGCCAAGGGACACCAACATCGCGTTAGGCGTGGCCGAGGGGACA
GCAGGGGAGCTATTTGGAGAGAGGGACTTGTCCCAGGCTCTCACCCACTCCTGGCTGAACCTTC
CAGGGCTGCCACGTTCAGACACCCCTTGAGAATGGCCCCCAGTTCCCACCTCCCACACCTGGAG
GGAGAGGCCCTTCTGCTGAGACCCGAACCCCTGCCCCTGCAGGAACCAGTGAGCTCCGGGTGGA
CCTCGTGGACTTCGAGGGCAACCACCAGTTTGCCAAGTACAGGTCCTTCCAGGTGGCAGGCGAG
GCAGAGAAGTACAAGCTGGTCCTGGGAGGCTTCCTGGAGGGCAATGCAGAGACCAGTTCTTCTC
CACCAAAGACCAGGACAACGACAACCATTCGGGAAACTGCGCGGAGCAGTACCACGGCGCCTGG
TGGTACAACGCCTGCCACTCCTCCAACCTGAACGGCCGCTACCTCCGGGGACTGCACACCAGCT
ATGCCAACGGCGTCAACTGGAGGTCGGGGAGAGGGTACAACTACAGCTACCAGGTGTCGGAGAT
GAAAGTGCGTCTCACGTAGGTGGGGCCCGGCCCGGCTCCTCCCCATCCACCGGCCTGCAGCCTC
CAGAAGCTTCGCTCCGTTCTGCCAGCATCTCGTCATCCCTGCCACCCCCTCACTCCCACTCCAT
AAACCTGCCTTGCCCAGACCCTTCTCTCCCATCAGTGTCTGAACGCATGTGCCCCACGGCCTCA
CAGAGGAAGAATCACGTTTCAAAAGTG

hide sequence

Protein Sequences


Protein RefSeqs	NP_999325	(Get FASTA)	NCBI Sequence Viewer
	XP_013844417	(Get FASTA)	NCBI Sequence Viewer
	XP_020938521	(Get FASTA)	NCBI Sequence Viewer
	XP_020938529	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC69641	(Get FASTA)	NCBI Sequence Viewer
	ABY47691	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000046056.2
	ENSSSCP00000046708
	ENSSSCP00000046708.2
	ENSSSCP00000064551.1
	ENSSSCP00000065871
	ENSSSCP00000065871.2
	ENSSSCP00005021456.1
	ENSSSCP00005021475.1
	ENSSSCP00005021545.1
	ENSSSCP00015006605.1
	ENSSSCP00015006668.1
	ENSSSCP00015006682.1
	ENSSSCP00015006696.1
	ENSSSCP00025022844.1
	ENSSSCP00025022888.1
	ENSSSCP00030013902.1
	ENSSSCP00030013910.1
	ENSSSCP00035005820.1
	ENSSSCP00035005824.1
	ENSSSCP00035005826.1
	ENSSSCP00035005832.1
	ENSSSCP00040007994.1
	ENSSSCP00040008103.1
	ENSSSCP00040008144.1
	ENSSSCP00050015270.1
	ENSSSCP00065006227.1
	ENSSSCP00065006255.1
	ENSSSCP00070006359.1
GenBank Protein	Q29042	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_020938529 ⟸ XM_021082870

- Peptide Label:

isoform X3

- Sequence:

show sequence

MELSRVAVALGPTGQLLLFLSFQTLAAQAADTCPEVKVVGLEGSDKLSILRGCPGLPGATGPKG
EAGANGPKGERGSPGVVGKAGPAGPKGDRGEKGARGEKGEPAQLQSCATGPRTCKELLTRGHFL
SGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAAYKRGFGSQLGEFWLGNDH
IHALTAQGTSELRVDLVDFEGNHQFAKYRSFQVAGEAEKYKLVLGGFLEGNAETSSSPPKTRTT
TTIRETARSSTTAPGGTTPATPPT

hide sequence

RefSeq Acc Id:	XP_020938521 ⟸ XM_021082862
- Peptide Label:	isoform X1
- UniProtKB:	A0A8D0RXB5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDRRESEAPPASSGRQDRLGPKETEGRRARVERKESLRSSSHVPQVTAHTLTSRPQPGPAPAGE RSTRRPAAQTHLPGSKDKALCTHVTPQRVKRPAAAAWMTLACSMAILEEFIPAPAGPGAQEAKW GQPRWTGLGHRSWLAWGLRPCPGCRLPLPQQGSLRLPAPPPPPLPLPRAPALASTSPLPFPGPR TCKELLTRGHFLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAAYKRGFG SQLGEFWLGNDHIHALTAQGTSELRVDLVDFEGNHQFAKYRSFQVAGEAEKYKLVLGGFLEGNA GDSLSSHRDQFFSTKDQDNDNHSGNCAEQYHGAWWYNACHSSNLNGRYLRGLHTSYANGVNWRS GRGYNYSYQVSEMKVRLT hide sequence

RefSeq Acc Id:	XP_013844417 ⟸ XM_013988963
- Peptide Label:	isoform X2
- UniProtKB:	A0A287AS68 (UniProtKB/TrEMBL)
- Sequence:	show sequence MELSRVAVALGPTGQLLLFLSFQTLAAQAADTCPGERGSPGVVGKAGPAGPKGDRGEKGARGEK GEPAQLQSCATGPRTCKELLTRGHFLSGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSV DFYRDWAAYKRGFGSQLGEFWLGNDHIHALTAQGTSELRVDLVDFEGNHQFAKYRSFQVAGEAE KYKLVLGGFLEGNAGDSLSSHRDQFFSTKDQDNDNHSGNCAEQYHGAWWYNACHSSNLNGRYLR GLHTSYANGVNWRSGRGYNYSYQVSEMKVRLT hide sequence

RefSeq Acc Id:	NP_999325 ⟸ NM_214160
- Peptide Label:	precursor
- UniProtKB:	Q29042 (UniProtKB/Swiss-Prot), A0A480TCK1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MELSRVAVALGPTGQLLLFLSFQTLAAQAADTCPEVKVVGLEGSDKLSILRGCPGLPGAAGPKG EAGANGPKGERGSPGVVGKAGPAGPKGDRGEKGARGEKGEPGQLQSCATGPRTCKELLTRGHFL SGWHTIYLPDCQPLTVLCDMDTDGGGWTVFQRRSDGSVDFYRDWAAYKRGFGSQLGEFWLGNDH IHALTAQGTSELRVDLVDFEGNHQFAKYRSFQVAGEAEKYKLVLGGFLEGNAGDSLSSHRDQFF STKDQDNDNHSGNCAEQYHGAWWYNACHSSNLNGRYLRGLHTSYANGVNWRSGRGYNYSYQVSE MKVRLT hide sequence

Protein Domains

Collagen-like Fibrinogen C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000029414	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005022238	UniProtKB/TrEMBL
	ENSSSCG00015012803	UniProtKB/TrEMBL
	ENSSSCG00025039282	UniProtKB/TrEMBL
	ENSSSCG00030022234	UniProtKB/TrEMBL
	ENSSSCG00035013304	UniProtKB/TrEMBL
	ENSSSCG00040014445	UniProtKB/TrEMBL
	ENSSSCG00050027240	UniProtKB/TrEMBL
	ENSSSCG00065011437	UniProtKB/TrEMBL
	ENSSSCG00070004107	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000058467.2	UniProtKB/TrEMBL
	ENSSSCT00000060706	ENTREZGENE
	ENSSSCT00000060706.3	UniProtKB/TrEMBL
	ENSSSCT00000084827.2	UniProtKB/TrEMBL
	ENSSSCT00000086207	ENTREZGENE
	ENSSSCT00000086207.2	UniProtKB/TrEMBL
	ENSSSCT00005035227.1	UniProtKB/TrEMBL
	ENSSSCT00005035266.1	UniProtKB/TrEMBL
	ENSSSCT00005035363.1	UniProtKB/TrEMBL
	ENSSSCT00015016944.1	UniProtKB/TrEMBL
	ENSSSCT00015017053.1	UniProtKB/TrEMBL
	ENSSSCT00015017078.1	UniProtKB/TrEMBL
	ENSSSCT00015017109.1	UniProtKB/TrEMBL
	ENSSSCT00025053645.1	UniProtKB/TrEMBL
	ENSSSCT00025053730.1	UniProtKB/TrEMBL
	ENSSSCT00030030889.1	UniProtKB/TrEMBL
	ENSSSCT00030030906.1	UniProtKB/TrEMBL
	ENSSSCT00035016811.1	UniProtKB/TrEMBL
	ENSSSCT00035016820.1	UniProtKB/TrEMBL
	ENSSSCT00035016828.1	UniProtKB/TrEMBL
	ENSSSCT00035016838.1	UniProtKB/TrEMBL
	ENSSSCT00040019343.1	UniProtKB/TrEMBL
	ENSSSCT00040019527.1	UniProtKB/TrEMBL
	ENSSSCT00040019607.1	UniProtKB/TrEMBL
	ENSSSCT00050036708.1	UniProtKB/TrEMBL
	ENSSSCT00065015244.1	UniProtKB/TrEMBL
	ENSSSCT00065015314.1	UniProtKB/TrEMBL
	ENSSSCT00070007736.1	UniProtKB/TrEMBL
Gene3D-CATH	3.90.215.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Collagen	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Fibrinogen-like_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Fibrinogen_a/b/g_C_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Fibrinogen_a/b/g_C_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Fibrinogen_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	ssc:397316	UniProtKB/Swiss-Prot
NCBI Gene	FCN1	ENTREZGENE
PANTHER	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FICOLIN-2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Collagen	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Fibrinogen_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	FIBRINOGEN_C_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FIBRINOGEN_C_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	FBG	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF56496	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A287APU2_PIG	UniProtKB/TrEMBL
	A0A287AS68	ENTREZGENE, UniProtKB/TrEMBL
	A0A480TCK1	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1SVI7_PIG	UniProtKB/TrEMBL
	A0A5G2QP75_PIG	UniProtKB/TrEMBL
	A0A5G2QR79_PIG	UniProtKB/TrEMBL
	A0A8D0J123_PIG	UniProtKB/TrEMBL
	A0A8D0JC93_PIG	UniProtKB/TrEMBL
	A0A8D0MP46_PIG	UniProtKB/TrEMBL
	A0A8D0MS98_PIG	UniProtKB/TrEMBL
	A0A8D0RXB5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0RYU0_PIG	UniProtKB/TrEMBL
	A0A8D0TW35_PIG	UniProtKB/TrEMBL
	A0A8D0W1Q0_PIG	UniProtKB/TrEMBL
	A0A8D0YPJ0_PIG	UniProtKB/TrEMBL
	A0A8D0YQL6_PIG	UniProtKB/TrEMBL
	A0A8D0YSG3_PIG	UniProtKB/TrEMBL
	A0A8D1DJQ6_PIG	UniProtKB/TrEMBL
	A0A8D1DJR5_PIG	UniProtKB/TrEMBL
	A0A8D1DKQ7_PIG	UniProtKB/TrEMBL
	FCN1_PIG	UniProtKB/Swiss-Prot, ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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