PSMC2 (proteasome 26S subunit, ATPase 2) - Rat Genome Database

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Gene: PSMC2 (proteasome 26S subunit, ATPase 2) Sus scrofa
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Symbol: PSMC2
Name: proteasome 26S subunit, ATPase 2
RGD ID: 13966564
Description: ENCODES a protein that exhibits general transcription initiation factor binding (ortholog); TBP-class protein binding (ortholog); INVOLVED IN positive regulation of proteasomal protein catabolic process (inferred); proteasome-mediated ubiquitin-dependent protein catabolic process (inferred); ubiquitin-dependent protein catabolic process (inferred); ASSOCIATED WITH genetic disease (ortholog); Norman-Roberts syndrome (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN dendritic spine (ortholog); P-body (ortholog); proteasome accessory complex (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 26S protease regulatory subunit 7; 26S proteasome regulatory subunit 7; proteasome (prosome, macropain) 26S subunit, ATPase, 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9103,362,599 - 103,376,343 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19103,362,684 - 103,376,048 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29113,971,194 - 113,984,560 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PSMC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9103,362,599 - 103,376,343 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19103,362,684 - 103,376,048 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29113,971,194 - 113,984,560 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSMC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387103,347,524 - 103,369,395 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7103,328,570 - 103,370,346 (+)EnsemblGRCh38hg38GRCh38
GRCh377102,987,971 - 103,009,842 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367102,775,325 - 102,795,892 (+)NCBINCBI36Build 36hg18NCBI36
Build 347102,582,039 - 102,602,606NCBI
Celera797,795,300 - 97,815,873 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef797,350,323 - 97,372,344 (+)NCBIHuRef
CHM1_17102,920,963 - 102,943,153 (+)NCBICHM1_1
T2T-CHM13v2.07104,661,962 - 104,683,844 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27102,348,337 - 102,370,208 (+)NCBI
Psmc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39521,990,273 - 22,008,785 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl521,990,281 - 22,008,785 (+)EnsemblGRCm39 Ensembl
GRCm38521,785,275 - 21,803,787 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl521,785,283 - 21,803,787 (+)EnsemblGRCm38mm10GRCm38
MGSCv37521,291,101 - 21,309,602 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36521,297,107 - 21,315,608 (+)NCBIMGSCv36mm8
Celera518,756,208 - 18,774,395 (+)NCBICelera
Cytogenetic Map5A3NCBI
cM Map59.97NCBI
Psmc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8414,148,080 - 14,162,390 (-)NCBIGRCr8
mRatBN7.2413,255,850 - 13,270,160 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl413,255,856 - 13,270,185 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx418,401,118 - 18,415,400 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0414,215,883 - 14,230,158 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0412,586,755 - 12,601,037 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.049,867,132 - 9,881,383 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl49,867,101 - 9,881,484 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.049,868,269 - 9,882,520 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.448,704,100 - 8,718,351 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.148,704,099 - 8,718,351 (-)NCBI
Celera48,847,110 - 8,861,246 (-)NCBICelera
Cytogenetic Map4q11NCBI
Psmc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554108,341,065 - 8,356,148 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554108,341,218 - 8,355,515 (+)NCBIChiLan1.0ChiLan1.0
PSMC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26140,201,706 - 140,227,300 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17188,473,396 - 188,497,270 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0795,338,743 - 95,359,353 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17108,083,019 - 108,103,595 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7108,083,203 - 108,103,494 (+)Ensemblpanpan1.1panPan2
PSMC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11816,845,593 - 16,859,010 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1816,845,594 - 16,858,911 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1816,488,537 - 16,501,956 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01817,136,145 - 17,149,599 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1817,136,146 - 17,149,526 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11816,900,975 - 16,914,588 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01816,839,559 - 16,853,208 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01817,107,769 - 17,121,439 (-)NCBIUU_Cfam_GSD_1.0
Psmc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511859,026,969 - 59,043,987 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647920,148,632 - 20,168,130 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647920,150,738 - 20,167,765 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12172,323,691 - 72,341,647 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2172,323,803 - 72,341,488 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604231,660,968 - 31,679,446 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psmc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473926,001,871 - 26,016,040 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473926,001,871 - 26,015,633 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PSMC2
316 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000016802   ⟹   ENSSSCP00000016354
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9103,362,599 - 103,376,343 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000043159   ⟹   ENSSSCP00000058991
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9103,362,671 - 103,376,343 (+)Ensembl
RefSeq Acc Id: NM_001245008   ⟹   NP_001231937
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19103,362,684 - 103,376,048 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001231937   ⟸   NM_001245008
- UniProtKB: F1SB53 (UniProtKB/TrEMBL),   A0A4X1VCL1 (UniProtKB/TrEMBL),   A0A8D1JG34 (UniProtKB/TrEMBL),   A0A8D0VT21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000016354   ⟸   ENSSSCT00000016802
RefSeq Acc Id: ENSSSCP00000058991   ⟸   ENSSSCT00000043159
Protein Domains
AAA+ ATPase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015424 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005041755 UniProtKB/TrEMBL
  ENSSSCG00015039644 UniProtKB/TrEMBL
  ENSSSCG00025035314 UniProtKB/TrEMBL
  ENSSSCG00030016527 UniProtKB/TrEMBL
  ENSSSCG00035055217 UniProtKB/TrEMBL
  ENSSSCG00040049700 UniProtKB/TrEMBL
  ENSSSCG00045038276 UniProtKB/TrEMBL
  ENSSSCG00050007694 UniProtKB/TrEMBL
  ENSSSCG00055019807 UniProtKB/TrEMBL
  ENSSSCG00060073802 UniProtKB/TrEMBL
  ENSSSCG00065072642 UniProtKB/TrEMBL
  ENSSSCG00070022953 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016802 ENTREZGENE
  ENSSSCT00000016802.5 UniProtKB/TrEMBL
  ENSSSCT00000043159.3 UniProtKB/TrEMBL
  ENSSSCT00005067355.1 UniProtKB/TrEMBL
  ENSSSCT00005067372.1 UniProtKB/TrEMBL
  ENSSSCT00015053121.1 UniProtKB/TrEMBL
  ENSSSCT00015053344.1 UniProtKB/TrEMBL
  ENSSSCT00025048228.1 UniProtKB/TrEMBL
  ENSSSCT00025048287.1 UniProtKB/TrEMBL
  ENSSSCT00030022900.1 UniProtKB/TrEMBL
  ENSSSCT00030022910.1 UniProtKB/TrEMBL
  ENSSSCT00035073653.1 UniProtKB/TrEMBL
  ENSSSCT00035073656.1 UniProtKB/TrEMBL
  ENSSSCT00040067134.1 UniProtKB/TrEMBL
  ENSSSCT00040067338.1 UniProtKB/TrEMBL
  ENSSSCT00040067630.1 UniProtKB/TrEMBL
  ENSSSCT00045066334.1 UniProtKB/TrEMBL
  ENSSSCT00045066361.1 UniProtKB/TrEMBL
  ENSSSCT00045066408.1 UniProtKB/TrEMBL
  ENSSSCT00050010514.1 UniProtKB/TrEMBL
  ENSSSCT00050010531.1 UniProtKB/TrEMBL
  ENSSSCT00055038977.1 UniProtKB/TrEMBL
  ENSSSCT00055039096.1 UniProtKB/TrEMBL
  ENSSSCT00060101109.1 UniProtKB/TrEMBL
  ENSSSCT00060101163.1 UniProtKB/TrEMBL
  ENSSSCT00065099896.1 UniProtKB/TrEMBL
  ENSSSCT00065099942.1 UniProtKB/TrEMBL
  ENSSSCT00070045691.1 UniProtKB/TrEMBL
  ENSSSCT00070045696.1 UniProtKB/TrEMBL
  ENSSSCT00070045699.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.60 UniProtKB/TrEMBL
  2.40.50.140 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  ATPase_AAA_CS UniProtKB/TrEMBL
  NA-bd_OB-fold UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  PRS7-like_OB UniProtKB/TrEMBL
KEGG Report ssc:100514865 UniProtKB/TrEMBL
NCBI Gene PSMC2 ENTREZGENE
PANTHER 26S PROTEASOME REGULATORY SUBUNIT UniProtKB/TrEMBL
  PTHR23073:SF13 UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  PRS7_OB UniProtKB/TrEMBL
PROSITE AAA UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A4X1VAB8_PIG UniProtKB/TrEMBL
  A0A4X1VCL1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VCL6_PIG UniProtKB/TrEMBL
  A0A8D0VT21 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JG34 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JPR4_PIG UniProtKB/TrEMBL
  F1SB53 ENTREZGENE
UniProt Secondary A0A287BR45 UniProtKB/TrEMBL
  F1SB53 UniProtKB/TrEMBL
VGNC ID VGNC:91913 ENTREZGENE