RFC5 (replication factor C subunit 5) - Rat Genome Database

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Gene: RFC5 (replication factor C subunit 5) Sus scrofa
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Symbol: RFC5
Name: replication factor C subunit 5
RGD ID: 13965543
Description: ENCODES a protein that exhibits single-stranded DNA helicase activity (ortholog); INVOLVED IN DNA duplex unwinding (inferred); DNA repair (inferred); DNA replication (inferred); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN DNA replication factor C complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1434,629,951 - 34,642,585 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11434,630,374 - 34,642,598 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21436,791,707 - 36,804,213 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RFC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1434,629,951 - 34,642,585 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11434,630,374 - 34,642,598 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21436,791,707 - 36,804,213 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RFC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812118,016,703 - 118,041,448 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12118,013,588 - 118,033,130 (+)EnsemblGRCh38hg38GRCh38
GRCh3712118,454,508 - 118,470,039 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612116,938,893 - 116,954,422 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412116,917,229 - 116,932,758NCBI
Celera12118,085,448 - 118,100,501 (+)NCBICelera
Cytogenetic Map12q24.23NCBI
HuRef12115,465,092 - 115,480,369 (+)NCBIHuRef
CHM1_112118,422,177 - 118,437,716 (+)NCBICHM1_1
T2T-CHM13v2.012118,003,997 - 118,021,853 (+)NCBIT2T-CHM13v2.0
Rfc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395117,517,210 - 117,527,088 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5117,516,168 - 117,527,112 (-)EnsemblGRCm39 Ensembl
GRCm385117,379,145 - 117,389,023 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5117,378,103 - 117,389,047 (-)EnsemblGRCm38mm10GRCm38
MGSCv375117,829,154 - 117,839,032 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365117,829,154 - 117,839,032 (-)NCBIMGSCv36mm8
Celera5114,470,100 - 114,479,973 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map556.88NCBI
Rfc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81244,868,322 - 44,877,879 (+)NCBIGRCr8
mRatBN7.21239,207,484 - 39,217,041 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1239,207,484 - 39,217,312 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1240,382,784 - 40,392,340 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01240,996,594 - 41,006,150 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01240,049,569 - 40,059,125 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01244,931,494 - 44,941,051 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1244,931,494 - 44,941,324 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01246,752,012 - 46,761,569 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41240,395,942 - 40,405,498 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11240,239,703 - 40,268,387 (+)NCBI
Celera1240,850,700 - 40,860,283 (+)NCBICelera
Cytogenetic Map12q16NCBI
Rfc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545513,326,271 - 13,338,050 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545513,325,912 - 13,337,241 (-)NCBIChiLan1.0ChiLan1.0
RFC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210126,080,598 - 126,096,663 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112126,076,978 - 126,093,033 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012115,595,398 - 115,611,442 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112118,973,645 - 118,990,308 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12118,973,560 - 118,990,308 (+)Ensemblpanpan1.1panPan2
RFC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12614,428,661 - 14,439,641 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2614,428,695 - 14,438,986 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2614,421,469 - 14,432,516 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02614,690,209 - 14,701,425 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2614,690,256 - 14,700,770 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12614,655,104 - 14,666,296 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02614,727,103 - 14,738,138 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02614,762,460 - 14,773,488 (+)NCBIUU_Cfam_GSD_1.0
Rfc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118154,732,093 - 154,743,094 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365584,735,678 - 4,747,538 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365584,736,332 - 4,747,323 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RFC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111113,352,342 - 113,368,147 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11113,352,378 - 113,370,829 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037131,739,741 - 131,755,709 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rfc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474715,442,328 - 15,454,550 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474715,441,338 - 15,454,577 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RFC5
180 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000037372   ⟹   ENSSSCP00000039406
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1434,629,951 - 34,642,547 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000045394   ⟹   ENSSSCP00000043438
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1434,631,416 - 34,642,585 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000076530   ⟹   ENSSSCP00000069995
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1434,629,951 - 34,641,233 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000077679   ⟹   ENSSSCP00000071000
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1434,630,657 - 34,642,569 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000091279   ⟹   ENSSSCP00000060055
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1434,613,943 - 34,642,573 (-)Ensembl
RefSeq Acc Id: XM_005670675   ⟹   XP_005670732
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11434,630,374 - 34,642,598 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005670732   ⟸   XM_005670675
- UniProtKB: A0A4X1TT89 (UniProtKB/TrEMBL),   A0A8D0I1T6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000043438   ⟸   ENSSSCT00000045394
RefSeq Acc Id: ENSSSCP00000060055   ⟸   ENSSSCT00000091279
RefSeq Acc Id: ENSSSCP00000069995   ⟸   ENSSSCT00000076530
RefSeq Acc Id: ENSSSCP00000039406   ⟸   ENSSSCT00000037372
RefSeq Acc Id: ENSSSCP00000071000   ⟸   ENSSSCT00000077679
Protein Domains
AAA+ ATPase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009854 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005008441 UniProtKB/TrEMBL
  ENSSSCG00015066413 UniProtKB/TrEMBL
  ENSSSCG00025023556 UniProtKB/TrEMBL
  ENSSSCG00030027545 UniProtKB/TrEMBL
  ENSSSCG00035077312 UniProtKB/TrEMBL
  ENSSSCG00040004428 UniProtKB/TrEMBL
  ENSSSCG00045035699 UniProtKB/TrEMBL
  ENSSSCG00050070297 UniProtKB/TrEMBL
  ENSSSCG00055027467 UniProtKB/TrEMBL
  ENSSSCG00060010972 UniProtKB/TrEMBL
  ENSSSCG00065068684 UniProtKB/TrEMBL
  ENSSSCG00070011467 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000037372 ENTREZGENE
  ENSSSCT00000037372.3 UniProtKB/TrEMBL
  ENSSSCT00000045394.3 UniProtKB/TrEMBL
  ENSSSCT00000076530.2 UniProtKB/TrEMBL
  ENSSSCT00000077679.2 UniProtKB/TrEMBL
  ENSSSCT00005012862.1 UniProtKB/TrEMBL
  ENSSSCT00015088925.1 UniProtKB/TrEMBL
  ENSSSCT00015089183.1 UniProtKB/TrEMBL
  ENSSSCT00015089275.1 UniProtKB/TrEMBL
  ENSSSCT00025032011.1 UniProtKB/TrEMBL
  ENSSSCT00025032042.1 UniProtKB/TrEMBL
  ENSSSCT00025032124.1 UniProtKB/TrEMBL
  ENSSSCT00025032139.1 UniProtKB/TrEMBL
  ENSSSCT00030038520.1 UniProtKB/TrEMBL
  ENSSSCT00030038524.1 UniProtKB/TrEMBL
  ENSSSCT00035105436.1 UniProtKB/TrEMBL
  ENSSSCT00035105475.1 UniProtKB/TrEMBL
  ENSSSCT00035105579.1 UniProtKB/TrEMBL
  ENSSSCT00035105611.1 UniProtKB/TrEMBL
  ENSSSCT00035105688.1 UniProtKB/TrEMBL
  ENSSSCT00040005880.1 UniProtKB/TrEMBL
  ENSSSCT00040005882.1 UniProtKB/TrEMBL
  ENSSSCT00040005890.1 UniProtKB/TrEMBL
  ENSSSCT00040005892.1 UniProtKB/TrEMBL
  ENSSSCT00045061328.1 UniProtKB/TrEMBL
  ENSSSCT00050095831.1 UniProtKB/TrEMBL
  ENSSSCT00050095833.1 UniProtKB/TrEMBL
  ENSSSCT00050095834.1 UniProtKB/TrEMBL
  ENSSSCT00050095838.1 UniProtKB/TrEMBL
  ENSSSCT00050095841.1 UniProtKB/TrEMBL
  ENSSSCT00055054454.1 UniProtKB/TrEMBL
  ENSSSCT00055054502.1 UniProtKB/TrEMBL
  ENSSSCT00055054576.1 UniProtKB/TrEMBL
  ENSSSCT00055054619.1 UniProtKB/TrEMBL
  ENSSSCT00060014321.1 UniProtKB/TrEMBL
  ENSSSCT00060014334.1 UniProtKB/TrEMBL
  ENSSSCT00060014338.1 UniProtKB/TrEMBL
  ENSSSCT00065094718.1 UniProtKB/TrEMBL
  ENSSSCT00065094794.1 UniProtKB/TrEMBL
  ENSSSCT00065095025.1 UniProtKB/TrEMBL
  ENSSSCT00065095097.1 UniProtKB/TrEMBL
  ENSSSCT00065095298.1 UniProtKB/TrEMBL
  ENSSSCT00070022333.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.60 UniProtKB/TrEMBL
  1.20.272.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  DNA_pol3_clamp-load_cplx_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Rep_factorC_C UniProtKB/TrEMBL
  RFC_lid UniProtKB/TrEMBL
KEGG Report ssc:100153965 UniProtKB/TrEMBL
NCBI Gene RFC5 ENTREZGENE
PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT UniProtKB/TrEMBL
  REPLICATION FACTOR C SUBUNIT 5 UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  Rep_fac_C UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF48019 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A287A6L4_PIG UniProtKB/TrEMBL
  A0A287AHU3_PIG UniProtKB/TrEMBL
  A0A4X1TT89 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R0U3_PIG UniProtKB/TrEMBL
  A0A5G2RA42_PIG UniProtKB/TrEMBL
  A0A8D0I1T6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0R8J5_PIG UniProtKB/TrEMBL
  A0A8D0RJN6_PIG UniProtKB/TrEMBL
  A0A8D1D882_PIG UniProtKB/TrEMBL
  A0A8D1NQ27_PIG UniProtKB/TrEMBL
  A0A8D1NSV0_PIG UniProtKB/TrEMBL
  A0A8D1S7U2_PIG UniProtKB/TrEMBL
VGNC ID VGNC:92235 ENTREZGENE