GNPTAB (N-acetylglucosamine-1-phosphate transferase subunits alpha and beta) - Rat Genome Database

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Gene: GNPTAB (N-acetylglucosamine-1-phosphate transferase subunits alpha and beta) Sus scrofa
Analyze
Symbol: GNPTAB
Name: N-acetylglucosamine-1-phosphate transferase subunits alpha and beta
RGD ID: 13965199
Description: ENCODES a protein that exhibits calcium ion binding (inferred); transferase activity, transferring phosphorus-containing groups (inferred); UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity (inferred); INVOLVED IN carbohydrate phosphorylation (ortholog); protein secretion (ortholog); secretion of lysosomal enzymes (ortholog); ASSOCIATED WITH genetic disease (ortholog); glycoproteinosis (ortholog); Legg-Calve-Perthes disease (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: N-acetylglucosamine-1-phosphate transferase alpha and beta subunits; N-acetylglucosamine-1-phosphotransferase subunits alpha/beta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl582,361,871 - 82,460,814 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1582,264,640 - 82,460,819 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2586,352,843 - 86,413,181 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
GNPTAB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl582,361,871 - 82,460,814 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1582,264,640 - 82,460,819 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2586,352,843 - 86,413,181 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GNPTAB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12101,745,499 - 101,830,959 (-)EnsemblGRCh38hg38GRCh38
GRCh3812101,745,499 - 101,830,959 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712102,139,277 - 102,224,737 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612100,663,408 - 100,748,763 (-)NCBINCBI36hg18NCBI36
Celera12101,803,304 - 101,888,673 (-)NCBI
Cytogenetic Map12q23.2NCBI
HuRef1299,198,884 - 99,284,601 (-)NCBIHuRef
CHM1_112102,105,957 - 102,191,339 (-)NCBICHM1_1
Gnptab
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391088,214,996 - 88,283,186 (+)NCBIGRCm39mm39
GRCm39 Ensembl1088,214,994 - 88,283,191 (+)Ensembl
GRCm381088,379,134 - 88,447,324 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1088,379,132 - 88,447,329 (+)EnsemblGRCm38mm10GRCm38
MGSCv371087,842,157 - 87,910,074 (+)NCBIGRCm37mm9NCBIm37
MGSCv361087,809,211 - 87,877,128 (+)NCBImm8
Celera1090,357,134 - 90,427,086 (+)NCBICelera
Cytogenetic Map10C1NCBI
Gnptab
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2722,800,502 - 22,866,336 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl728,956,512 - 29,022,868 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0728,956,363 - 29,023,232 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0729,063,329 - 29,130,166 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4725,084,137 - 25,149,880 (+)NCBIRGSC3.4rn4RGSC3.4
Celera719,960,704 - 20,027,442 (+)NCBICelera
Cytogenetic Map7q13NCBI
Gnptab
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540537,107,542 - 37,136,993 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540537,107,902 - 37,136,993 (-)NCBIChiLan1.0ChiLan1.0
GNPTAB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112102,727,949 - 102,816,560 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12102,729,615 - 102,816,560 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01299,328,026 - 99,418,151 (-)NCBIMhudiblu_PPA_v0panPan3
GNPTAB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11540,659,108 - 40,724,498 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1540,631,279 - 40,704,365 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1541,027,451 - 41,092,978 (-)NCBI
ROS_Cfam_1.01541,313,158 - 41,378,930 (-)NCBI
UMICH_Zoey_3.11540,567,331 - 40,640,075 (-)NCBI
UNSW_CanFamBas_1.01540,676,876 - 40,742,356 (-)NCBI
UU_Cfam_GSD_1.01540,950,892 - 41,016,624 (-)NCBI
Gnptab
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494519,223,523 - 19,299,600 (+)NCBI
SpeTri2.0NW_00493649212,233,943 - 12,310,014 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNPTAB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11196,998,671 - 97,084,333 (-)NCBI
ChlSab1.1 Ensembl1196,999,646 - 97,084,225 (-)Ensembl
Vero_WHO_p1.0NW_023666037147,919,739 - 148,005,708 (+)NCBI
Gnptab
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247506,315,949 - 6,344,919 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 6 2 1 5 20 2 2 3
Low 4 2 2 2 3 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021092662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021092676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK234896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK350349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU928944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBZA01000253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01123860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000000941   ⟹   ENSSSCP00000000921
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl582,361,871 - 82,460,791 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000028915   ⟹   ENSSSCP00000021730
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl582,361,930 - 82,460,814 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000065519   ⟹   ENSSSCP00000040749
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl582,361,871 - 82,459,460 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000073525   ⟹   ENSSSCP00000072104
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl582,361,871 - 82,385,854 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000074016   ⟹   ENSSSCP00000062284
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl582,361,871 - 82,439,230 (+)Ensembl
RefSeq Acc Id: XM_021092662   ⟹   XP_020948321
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1582,315,063 - 82,460,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092663   ⟹   XP_020948322
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1582,315,062 - 82,460,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092664   ⟹   XP_020948323
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1582,315,062 - 82,460,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092665   ⟹   XP_020948324
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1582,264,640 - 82,460,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092666   ⟹   XP_020948325
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1582,264,640 - 82,460,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092667   ⟹   XP_020948326
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1582,264,640 - 82,460,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092668   ⟹   XP_020948327
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1582,264,640 - 82,460,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092669   ⟹   XP_020948328
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1582,281,789 - 82,460,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092670   ⟹   XP_020948329
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1582,264,640 - 82,460,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092671   ⟹   XP_020948330
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1582,338,618 - 82,460,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092672   ⟹   XP_020948331
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1582,361,907 - 82,460,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092673   ⟹   XP_020948332
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1582,361,930 - 82,460,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092674   ⟹   XP_020948333
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1582,363,546 - 82,460,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092675   ⟹   XP_020948334
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1582,377,337 - 82,460,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021092676   ⟹   XP_020948335
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1582,309,731 - 82,460,819 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020948324   ⟸   XM_021092665
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020948325   ⟸   XM_021092666
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020948326   ⟸   XM_021092667
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020948327   ⟸   XM_021092668
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020948329   ⟸   XM_021092670
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020948328   ⟸   XM_021092669
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020948335   ⟸   XM_021092676
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_020948323   ⟸   XM_021092664
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020948322   ⟸   XM_021092663
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020948321   ⟸   XM_021092662
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020948330   ⟸   XM_021092671
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020948331   ⟸   XM_021092672
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_020948332   ⟸   XM_021092673
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020948333   ⟸   XM_021092674
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_020948334   ⟸   XM_021092675
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSSSCP00000062284   ⟸   ENSSSCT00000074016
RefSeq Acc Id: ENSSSCP00000072104   ⟸   ENSSSCT00000073525
RefSeq Acc Id: ENSSSCP00000000921   ⟸   ENSSSCT00000000941
RefSeq Acc Id: ENSSSCP00000040749   ⟸   ENSSSCT00000065519
RefSeq Acc Id: ENSSSCP00000021730   ⟸   ENSSSCT00000028915
Protein Domains
EF-hand   LNR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000862 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070006116 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000000921 UniProtKB/TrEMBL
  ENSSSCP00000021730 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000040749 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000062284 UniProtKB/TrEMBL
  ENSSSCP00000072104 UniProtKB/TrEMBL
  ENSSSCP00070009705 UniProtKB/TrEMBL
  ENSSSCP00070009709 UniProtKB/TrEMBL
  ENSSSCP00070009732 UniProtKB/TrEMBL
  ENSSSCP00070009762 UniProtKB/TrEMBL
  ENSSSCP00070009779 UniProtKB/TrEMBL
  ENSSSCP00070009791 UniProtKB/TrEMBL
  ENSSSCP00070009806 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000000941 UniProtKB/TrEMBL
  ENSSSCT00000028915 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000065519 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000073525 UniProtKB/TrEMBL
  ENSSSCT00000074016 UniProtKB/TrEMBL
  ENSSSCT00070011781 UniProtKB/TrEMBL
  ENSSSCT00070011785 UniProtKB/TrEMBL
  ENSSSCT00070011810 UniProtKB/TrEMBL
  ENSSSCT00070011845 UniProtKB/TrEMBL
  ENSSSCT00070011863 UniProtKB/TrEMBL
  ENSSSCT00070011880 UniProtKB/TrEMBL
  ENSSSCT00070011898 UniProtKB/TrEMBL
InterPro DMAP1-bd UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  GNPTAB_reg UniProtKB/TrEMBL
  Notch-like_dom_sf UniProtKB/TrEMBL
  Notch_dom UniProtKB/TrEMBL
  Stealth_CR1 UniProtKB/TrEMBL
  Stealth_CR2 UniProtKB/TrEMBL
  Stealth_CR3 UniProtKB/TrEMBL
  Stealth_CR4 UniProtKB/TrEMBL
NCBI Gene GNPTAB ENTREZGENE
Pfam DMAP_binding UniProtKB/TrEMBL
  GlcNAc-1_reg UniProtKB/TrEMBL
  Notch UniProtKB/TrEMBL
  Stealth_CR1 UniProtKB/TrEMBL
  Stealth_CR2 UniProtKB/TrEMBL
  Stealth_CR3 UniProtKB/TrEMBL
  Stealth_CR4 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  LNR UniProtKB/TrEMBL
SMART DMAP_binding UniProtKB/TrEMBL
  SM00004 UniProtKB/TrEMBL
Superfamily-SCOP SSF90193 UniProtKB/TrEMBL
UniProt A0A287A9Y3_PIG UniProtKB/TrEMBL
  A0A4X1T1W3_PIG UniProtKB/TrEMBL
  A0A4X1T210_PIG UniProtKB/TrEMBL
  A0A4X1T374_PIG UniProtKB/TrEMBL
  A0A4X1T389_PIG UniProtKB/TrEMBL
  A0A4X1T3Y8_PIG UniProtKB/TrEMBL
  A0A4X1T422_PIG UniProtKB/TrEMBL
  A0A4X1T4D0_PIG UniProtKB/TrEMBL
  A0A5G2QVS8_PIG UniProtKB/TrEMBL
  A0A5G2RJM8_PIG UniProtKB/TrEMBL
  F1SRJ2_PIG UniProtKB/TrEMBL
  I3LCF5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:88546 ENTREZGENE