RPS19 (ribosomal protein S19) - Rat Genome Database

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Gene: RPS19 (ribosomal protein S19) Sus scrofa
Analyze
Symbol: RPS19
Name: ribosomal protein S19
RGD ID: 13964225
Description: ENCODES a protein that exhibits fibroblast growth factor binding (ortholog); identical protein binding (ortholog); protein kinase binding (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); erythrocyte differentiation (ortholog); maturation of SSU-rRNA (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH agammaglobulinemia 3 (ortholog); Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); FOUND IN cytosol (ortholog); cytosolic ribosome (ortholog); cytosolic small ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S19
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl650,000,948 - 50,010,341 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1650,003,198 - 50,010,135 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2646,056,524 - 46,063,482 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPS19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl650,000,948 - 50,010,341 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1650,003,198 - 50,010,135 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2646,056,524 - 46,063,482 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPS19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381941,860,255 - 41,872,925 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1941,860,255 - 41,872,925 (+)EnsemblGRCh38hg38GRCh38
GRCh371942,364,325 - 42,376,993 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361947,055,828 - 47,067,324 (+)NCBINCBI36Build 36hg18NCBI36
Build 341947,055,827 - 47,067,322NCBI
Celera1939,163,675 - 39,175,171 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1938,795,270 - 38,806,767 (+)NCBIHuRef
CHM1_11942,365,453 - 42,376,951 (+)NCBICHM1_1
T2T-CHM13v2.01944,679,738 - 44,692,405 (+)NCBIT2T-CHM13v2.0
Rps19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39724,584,013 - 24,589,236 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl724,583,796 - 24,589,231 (+)EnsemblGRCm39 Ensembl
GRCm38724,884,592 - 24,889,811 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl724,884,371 - 24,889,806 (+)EnsemblGRCm38mm10GRCm38
MGSCv37725,669,733 - 25,674,821 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36724,593,474 - 24,598,562 (+)NCBIMGSCv36mm8
Celera719,500,610 - 19,505,697 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map713.41NCBI
Rps19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8189,608,408 - 89,614,390 (+)NCBIGRCr8
mRatBN7.2180,480,718 - 80,486,511 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl180,480,951 - 80,486,508 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx185,873,345 - 85,879,047 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0194,424,173 - 94,429,875 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0187,629,105 - 87,634,807 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0916,802,280 - 16,807,982 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,750,928 - 81,756,627 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,007,889 - 83,013,590 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4180,176,649 - 80,182,351 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1180,254,777 - 80,260,460 (+)NCBI
Celera174,928,360 - 74,934,062 (+)NCBICelera
Cytogenetic Map1q21NCBI
Rps19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955555969,340 - 976,509 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955555969,345 - 976,122 (-)NCBIChiLan1.0ChiLan1.0
RPS19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22047,965,298 - 47,976,883 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11949,827,387 - 49,845,848 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01938,748,604 - 38,760,055 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11947,254,157 - 47,264,953 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1947,254,157 - 47,264,953 (+)Ensemblpanpan1.1panPan2
RPS19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,418,800 - 112,427,445 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,411,281 - 112,427,381 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1111,855,118 - 111,863,708 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01113,042,734 - 113,051,324 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,040,851 - 113,051,255 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,596,102 - 112,604,692 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,232,253 - 112,240,642 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,158,731 - 113,167,322 (-)NCBIUU_Cfam_GSD_1.0
Rps19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934916,221,100 - 16,228,630 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936706568,364 - 575,126 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936706568,443 - 575,973 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1636,067,959 - 36,085,581 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607314,302,605 - 14,313,949 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624907810,984 - 818,614 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624907811,069 - 818,218 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPS19
138 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003127181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003481873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005655906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_298574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK231324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK231487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK231589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK232911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK233748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK233775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK233857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK237430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK344960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK346641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK346748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK346831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK346849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK346901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK346931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK347768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK348733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK351080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK351369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK392029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY610470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FP015926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01047454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000003379   ⟹   ENSSSCP00000003296
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl650,000,948 - 50,010,341 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000049365   ⟹   ENSSSCP00000036235
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl650,000,219 - 50,009,592 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000099743   ⟹   ENSSSCP00000076506
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl650,003,237 - 50,009,584 (-)Ensembl
RefSeq Acc Id: XM_003127181   ⟹   XP_003127229
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1650,003,198 - 50,010,116 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003481873   ⟹   XP_003481921
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1650,003,198 - 50,010,028 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005655906   ⟹   XP_005655963
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1650,003,198 - 50,010,135 (-)NCBI
Sequence:
RefSeq Acc Id: XR_298574
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1650,003,201 - 50,010,121 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003127229 (Get FASTA)   NCBI Sequence Viewer  
  XP_003481921 (Get FASTA)   NCBI Sequence Viewer  
  XP_005655963 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000003296.4
  ENSSSCP00000076506
  ENSSSCP00000076506.1
  ENSSSCP00005025851.1
  ENSSSCP00065003042.1
GenBank Protein Q29308 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005655963   ⟸   XM_005655906
- Peptide Label: isoform X1
- UniProtKB: A0A8D1XF00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003127229   ⟸   XM_003127181
- Peptide Label: isoform X2
- UniProtKB: A0A8D0JAI4 (UniProtKB/TrEMBL),   A0A8W4FAS9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003481921   ⟸   XM_003481873
- Peptide Label: isoform X2
- UniProtKB: A0A8D0JAI4 (UniProtKB/TrEMBL),   A0A8W4FAS9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000036235   ⟸   ENSSSCT00000049365
RefSeq Acc Id: ENSSSCP00000003296   ⟸   ENSSSCT00000003379
RefSeq Acc Id: ENSSSCP00000076506   ⟸   ENSSSCT00000099743


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003042 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005026689 UniProtKB/TrEMBL
  ENSSSCG00065005159 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003379.5 UniProtKB/TrEMBL
  ENSSSCT00000099743 ENTREZGENE
  ENSSSCT00000099743.1 UniProtKB/TrEMBL
  ENSSSCT00005042251.1 UniProtKB/TrEMBL
  ENSSSCT00065007022.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ribosomal_S19e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S19e_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100518254 UniProtKB/TrEMBL
NCBI Gene RPS19 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11710 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_S19e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S19E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Ribosomal_S19e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8D0JAI4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1XF00 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FAS9 ENTREZGENE, UniProtKB/TrEMBL
  F1RGG1_PIG UniProtKB/TrEMBL
  Q29308 ENTREZGENE, UniProtKB/Swiss-Prot