PLEKHA2 (pleckstrin homology domain containing A2) - Rat Genome Database

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Gene: PLEKHA2 (pleckstrin homology domain containing A2) Sus scrofa
Analyze
Symbol: PLEKHA2
Name: pleckstrin homology domain containing A2
RGD ID: 13964205
Description: ENCODES a protein that exhibits fibronectin binding (ortholog); laminin binding (ortholog); INVOLVED IN positive regulation of cell-matrix adhesion (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia 54 (ortholog); hypogonadotropic hypogonadism 2 with or without anosmia (ortholog); FOUND IN membrane (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2; pleckstrin homology domain-containing family A member 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1547,626,110 - 47,697,603 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11547,626,107 - 47,697,238 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21554,710,304 - 54,731,396 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)
membrane  (IBA,ISO)
protein-containing complex  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
PLEKHA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1547,626,110 - 47,697,603 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11547,626,107 - 47,697,238 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21554,710,304 - 54,731,396 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLEKHA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38838,901,346 - 38,973,912 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl838,901,235 - 38,973,912 (+)EnsemblGRCh38hg38GRCh38
GRCh37838,758,864 - 38,831,431 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36838,877,910 - 38,950,588 (+)NCBINCBI36Build 36hg18NCBI36
Build 34838,877,985 - 38,945,341NCBI
Celera837,712,048 - 37,783,032 (+)NCBICelera
Cytogenetic Map8p11.22NCBI
HuRef837,326,687 - 37,364,593 (+)NCBIHuRef
HuRef837,294,194 - 37,310,707 (+)NCBIHuRef
CHM1_1838,960,620 - 39,033,491 (+)NCBICHM1_1
T2T-CHM13v2.0839,178,051 - 39,251,053 (+)NCBIT2T-CHM13v2.0
Plekha2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39825,529,160 - 25,594,684 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl825,529,160 - 25,592,392 (-)EnsemblGRCm39 Ensembl
GRCm38825,039,144 - 25,104,679 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl825,039,144 - 25,102,376 (-)EnsemblGRCm38mm10GRCm38
MGSCv37826,149,616 - 26,212,283 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36826,506,385 - 26,567,277 (-)NCBIMGSCv36mm8
Celera826,506,205 - 26,568,790 (-)NCBICelera
Cytogenetic Map8A2NCBI
cM Map813.7NCBI
Plekha2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81673,641,338 - 73,704,068 (+)NCBIGRCr8
mRatBN7.21666,938,684 - 67,000,661 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1666,939,109 - 66,999,395 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01671,725,649 - 71,784,432 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1671,738,718 - 71,787,787 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01671,376,494 - 71,434,725 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1664,845,382 - 64,902,600 (+)NCBICelera
Cytogenetic Map16q12.4NCBI
Plekha2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546314,462,875 - 14,525,174 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546314,462,875 - 14,525,174 (+)NCBIChiLan1.0ChiLan1.0
PLEKHA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2757,463,091 - 57,536,307 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1833,180,577 - 33,253,791 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0838,202,121 - 38,275,316 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1835,377,105 - 35,445,971 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl835,377,105 - 35,446,938 (+)Ensemblpanpan1.1panPan2
PLEKHA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11626,570,466 - 26,644,971 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1626,572,641 - 26,629,495 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1627,090,002 - 27,165,475 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01628,401,507 - 28,476,061 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1628,400,081 - 28,476,115 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11626,693,773 - 26,769,316 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01627,270,483 - 27,346,290 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01627,308,791 - 27,384,846 (-)NCBIUU_Cfam_GSD_1.0
Plekha2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494349,180,691 - 49,250,516 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367102,223,941 - 2,276,792 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367102,210,683 - 2,280,522 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLEKHA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1836,901,552 - 36,989,415 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl836,918,990 - 36,992,607 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660524,986,349 - 5,077,337 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plekha2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247804,633,007 - 4,683,162 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247804,633,487 - 4,695,555 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PLEKHA2
1972 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 2 5 15 1 2 3
Low 1 2 8 1 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000044445   ⟹   ENSSSCP00000049430
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1547,629,950 - 47,697,357 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000047414   ⟹   ENSSSCP00000057997
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1547,629,950 - 47,697,357 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000063721   ⟹   ENSSSCP00000040508
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1547,626,110 - 47,697,603 (-)Ensembl
RefSeq Acc Id: XM_021075122   ⟹   XP_020930781
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11547,626,107 - 47,697,238 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020930781   ⟸   XM_021075122
- UniProtKB: A0A0B8RTC7 (UniProtKB/TrEMBL),   A0A481DAM9 (UniProtKB/TrEMBL),   A0A4X1VWV7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000049430   ⟸   ENSSSCT00000044445
RefSeq Acc Id: ENSSSCP00000040508   ⟸   ENSSSCT00000063721
RefSeq Acc Id: ENSSSCP00000057997   ⟸   ENSSSCT00000047414
Protein Domains
PH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000033367 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025068359 UniProtKB/TrEMBL
  ENSSSCG00030069147 UniProtKB/TrEMBL
  ENSSSCG00035024621 UniProtKB/TrEMBL
  ENSSSCG00040044970 UniProtKB/TrEMBL
  ENSSSCG00050033783 UniProtKB/TrEMBL
  ENSSSCG00055009349 UniProtKB/TrEMBL
  ENSSSCG00060078516 UniProtKB/TrEMBL
  ENSSSCG00065019269 UniProtKB/TrEMBL
  ENSSSCG00070027119 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000044445.3 UniProtKB/TrEMBL
  ENSSSCT00000047414.3 UniProtKB/TrEMBL
  ENSSSCT00000063721 ENTREZGENE
  ENSSSCT00000063721.3 UniProtKB/TrEMBL
  ENSSSCT00025093897.1 UniProtKB/TrEMBL
  ENSSSCT00025094139.1 UniProtKB/TrEMBL
  ENSSSCT00025094365.1 UniProtKB/TrEMBL
  ENSSSCT00030096768.1 UniProtKB/TrEMBL
  ENSSSCT00030096809.1 UniProtKB/TrEMBL
  ENSSSCT00030096847.1 UniProtKB/TrEMBL
  ENSSSCT00035032384.1 UniProtKB/TrEMBL
  ENSSSCT00035032400.1 UniProtKB/TrEMBL
  ENSSSCT00035032416.1 UniProtKB/TrEMBL
  ENSSSCT00035032421.1 UniProtKB/TrEMBL
  ENSSSCT00035032422.1 UniProtKB/TrEMBL
  ENSSSCT00040060320.1 UniProtKB/TrEMBL
  ENSSSCT00040060491.1 UniProtKB/TrEMBL
  ENSSSCT00040060650.1 UniProtKB/TrEMBL
  ENSSSCT00050045284.1 UniProtKB/TrEMBL
  ENSSSCT00050045293.1 UniProtKB/TrEMBL
  ENSSSCT00050045306.1 UniProtKB/TrEMBL
  ENSSSCT00055018247.1 UniProtKB/TrEMBL
  ENSSSCT00055018293.1 UniProtKB/TrEMBL
  ENSSSCT00055018351.1 UniProtKB/TrEMBL
  ENSSSCT00060108477.1 UniProtKB/TrEMBL
  ENSSSCT00060108479.1 UniProtKB/TrEMBL
  ENSSSCT00060108480.1 UniProtKB/TrEMBL
  ENSSSCT00065025619.1 UniProtKB/TrEMBL
  ENSSSCT00065025630.1 UniProtKB/TrEMBL
  ENSSSCT00065025640.1 UniProtKB/TrEMBL
  ENSSSCT00070054380.1 UniProtKB/TrEMBL
  ENSSSCT00070054381.1 UniProtKB/TrEMBL
  ENSSSCT00070054382.1 UniProtKB/TrEMBL
  ENSSSCT00070054383.1 UniProtKB/TrEMBL
  ENSSSCT00070054384.1 UniProtKB/TrEMBL
  ENSSSCT00070054385.1 UniProtKB/TrEMBL
  ENSSSCT00070054386.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
NCBI Gene PLEKHA2 ENTREZGENE
PANTHER PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY A MEMBER 2 UniProtKB/TrEMBL
  TANDEM PH DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam PF00169 UniProtKB/TrEMBL
PROSITE PH_DOMAIN UniProtKB/TrEMBL
SMART SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0A0B8RTC7 ENTREZGENE
  A0A287A991_PIG UniProtKB/TrEMBL
  A0A287AZN8_PIG UniProtKB/TrEMBL
  A0A287BNI0_PIG UniProtKB/TrEMBL
  A0A481DAM9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VRA0_PIG UniProtKB/TrEMBL
  A0A4X1VW54_PIG UniProtKB/TrEMBL
  A0A4X1VWV7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Q687_PIG UniProtKB/TrEMBL
  A0A8D1X7V1_PIG UniProtKB/TrEMBL
VGNC ID VGNC:95611 ENTREZGENE