SPAG11 (sperm associated antigen 11) - Rat Genome Database

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Gene: SPAG11 (sperm associated antigen 11) Sus scrofa
Analyze
Symbol: SPAG11
Name: sperm associated antigen 11
RGD ID: 13963705
Description: INVOLVED IN defense response to bacterium (ortholog); defense response to Gram-negative bacterium (ortholog); defense response to Gram-positive bacterium (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: EP2E
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1538,033,961 - 38,037,606 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11538,027,922 - 38,037,608 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:16596454   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SPAG11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1538,033,961 - 38,037,606 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11538,027,922 - 38,037,608 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DEFB103B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3887,428,888 - 7,430,348 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl87,428,888 - 7,430,348 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl87,881,392 - 7,882,663 (+)EnsemblGRCh38hg38GRCh38
GRCh3787,286,410 - 7,287,870 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3687,273,901 - 7,275,280 (-)NCBINCBI36Build 36hg18NCBI36
Build 3487,776,135 - 7,777,588NCBI
Cytogenetic Map8p23.1NCBI
HuRef86,934,609 - 6,935,881 (-)NCBIHuRef
CHM1_187,340,124 - 7,341,397 (+)NCBICHM1_1
T2T-CHM13v2.087,157,879 - 7,159,340 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in SPAG11
136 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 2 1 3 3 2 18 3 1
Below cutoff 6 3 2 4 2

Sequence


Reference Sequences
RefSeq Acc Id: NM_001129977   ⟹   NP_001123449
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11538,027,922 - 38,037,608 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001123449   ⟸   NM_001129977
- UniProtKB: Q1RLJ2 (UniProtKB/TrEMBL),   A0A4X1VXE4 (UniProtKB/TrEMBL),   I3L6W0 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000020934 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005003410 UniProtKB/TrEMBL
  ENSSSCG00015031461 UniProtKB/TrEMBL
  ENSSSCG00025002212 UniProtKB/TrEMBL
  ENSSSCG00030041599 UniProtKB/TrEMBL
  ENSSSCG00035028815 UniProtKB/TrEMBL
  ENSSSCG00040064048 UniProtKB/TrEMBL
  ENSSSCG00045005208 UniProtKB/TrEMBL
  ENSSSCG00050021591 UniProtKB/TrEMBL
  ENSSSCG00055000839 UniProtKB/TrEMBL
  ENSSSCG00060011577 UniProtKB/TrEMBL
  ENSSSCG00065048995 UniProtKB/TrEMBL
  ENSSSCG00070027372 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000029738 ENTREZGENE
  ENSSSCT00000029738.3 UniProtKB/TrEMBL
  ENSSSCT00000087647.2 UniProtKB/TrEMBL
  ENSSSCT00005005024.1 UniProtKB/TrEMBL
  ENSSSCT00015041635.1 UniProtKB/TrEMBL
  ENSSSCT00015041855.1 UniProtKB/TrEMBL
  ENSSSCT00025002839.1 UniProtKB/TrEMBL
  ENSSSCT00025002874.1 UniProtKB/TrEMBL
  ENSSSCT00030057819.1 UniProtKB/TrEMBL
  ENSSSCT00030057860.1 UniProtKB/TrEMBL
  ENSSSCT00035038113.1 UniProtKB/TrEMBL
  ENSSSCT00035038134.1 UniProtKB/TrEMBL
  ENSSSCT00040087469.1 UniProtKB/TrEMBL
  ENSSSCT00040087643.1 UniProtKB/TrEMBL
  ENSSSCT00045008646.1 UniProtKB/TrEMBL
  ENSSSCT00045008657.1 UniProtKB/TrEMBL
  ENSSSCT00050029073.1 UniProtKB/TrEMBL
  ENSSSCT00050029089.1 UniProtKB/TrEMBL
  ENSSSCT00055001463.1 UniProtKB/TrEMBL
  ENSSSCT00055001479.1 UniProtKB/TrEMBL
  ENSSSCT00060015131.1 UniProtKB/TrEMBL
  ENSSSCT00060015135.1 UniProtKB/TrEMBL
  ENSSSCT00065067037.1 UniProtKB/TrEMBL
  ENSSSCT00065067051.1 UniProtKB/TrEMBL
  ENSSSCT00070054905.1 UniProtKB/TrEMBL
  ENSSSCT00070054906.1 UniProtKB/TrEMBL
InterPro Defensin_beta-typ UniProtKB/TrEMBL
  Sperm_Ag_HE2 UniProtKB/TrEMBL
KEGG Report ssc:100170139 UniProtKB/TrEMBL
NCBI Gene SPAG11 ENTREZGENE
PANTHER PTHR14081 UniProtKB/TrEMBL
  SPERM-ASSOCIATED ANTIGEN 11 UniProtKB/TrEMBL
Pfam Defensin_beta UniProtKB/TrEMBL
Superfamily-SCOP Defensin-like UniProtKB/TrEMBL
UniProt A0A4X1VXE4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VZ69_PIG UniProtKB/TrEMBL
  A0A8D0I0C7_PIG UniProtKB/TrEMBL
  I3L6W0 ENTREZGENE, UniProtKB/TrEMBL
  Q1RLJ2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A5G2QTE7 UniProtKB/TrEMBL