ATAD1 (ATPase family AAA domain containing 1) - Rat Genome Database

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Gene: ATAD1 (ATPase family AAA domain containing 1) Sus scrofa
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Symbol: ATAD1
Name: ATPase family AAA domain containing 1
RGD ID: 13962229
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); nucleotide binding (inferred); INVOLVED IN extraction of mislocalized protein from mitochondrial outer membrane (inferred); learning (inferred); memory (inferred); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH genetic disease (ortholog); hyperekplexia 4 (ortholog); juvenile polyposis syndrome (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATPase family AAA domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1499,815,203 - 99,885,160 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11499,802,939 - 99,885,562 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214108,795,831 - 108,887,914 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATAD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1499,815,203 - 99,885,160 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11499,802,939 - 99,885,562 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214108,795,831 - 108,887,914 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATAD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381087,751,512 - 87,841,361 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1087,751,512 - 87,841,361 (-)EnsemblGRCh38hg38GRCh38
GRCh371089,511,269 - 89,577,983 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361089,502,855 - 89,567,897 (-)NCBINCBI36Build 36hg18NCBI36
Build 341089,502,854 - 89,567,897NCBI
Celera1083,259,379 - 83,324,398 (-)NCBICelera
Cytogenetic Map10q23.31NCBI
HuRef1083,148,033 - 83,212,913 (-)NCBIHuRef
CHM1_11089,795,178 - 89,860,216 (-)NCBICHM1_1
T2T-CHM13v2.01088,635,419 - 88,725,279 (-)NCBIT2T-CHM13v2.0
Atad1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391932,649,958 - 32,717,187 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1932,649,038 - 32,717,186 (-)EnsemblGRCm39 Ensembl
GRCm381932,672,558 - 32,739,787 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1932,671,638 - 32,739,786 (-)EnsemblGRCm38mm10GRCm38
MGSCv371932,747,053 - 32,786,788 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361932,738,560 - 32,778,295 (-)NCBIMGSCv36mm8
Celera1933,455,381 - 33,495,118 (-)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1927.55NCBI
Atad1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81239,957,329 - 240,023,792 (-)NCBIGRCr8
mRatBN7.21230,544,227 - 230,610,524 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1230,544,047 - 230,596,548 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1238,919,429 - 238,964,037 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01245,849,131 - 245,893,739 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01238,687,243 - 238,731,853 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01251,234,702 - 251,386,996 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1251,235,508 - 251,387,002 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01258,466,598 - 258,500,477 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41236,682,640 - 236,726,705 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11236,847,840 - 236,898,593 (-)NCBI
Celera1227,659,669 - 227,703,783 (-)NCBICelera
Cytogenetic Map1q52NCBI
Atad1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554255,117,964 - 5,180,578 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554255,118,107 - 5,180,578 (+)NCBIChiLan1.0ChiLan1.0
ATAD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2899,770,305 - 99,836,126 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11099,775,621 - 99,841,442 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01084,473,087 - 84,544,902 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11087,981,974 - 88,071,098 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1087,981,974 - 88,048,228 (-)Ensemblpanpan1.1panPan2
ATAD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12637,749,799 - 37,811,490 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2637,750,649 - 37,794,149 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2637,632,673 - 37,694,311 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02639,280,736 - 39,342,518 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2639,280,736 - 39,325,158 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12637,187,145 - 37,248,760 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02636,769,037 - 36,830,700 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02638,008,503 - 38,070,239 (-)NCBIUU_Cfam_GSD_1.0
Atad1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721377,367,884 - 77,438,599 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367351,376,526 - 1,422,126 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367351,377,168 - 1,423,696 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATAD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1981,197,332 - 81,285,279 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604841,858,621 - 41,925,226 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atad1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479113,869,934 - 13,919,470 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479113,869,632 - 13,919,468 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATAD1
1667 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001927977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005671257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013983524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021073106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021073107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002338602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002338603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002338604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002338605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002338606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK230546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK343701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY609870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT827875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01108742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSSCT00000011423   ⟹   ENSSSCP00000011127
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1499,790,300 - 99,885,160 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000095806   ⟹   ENSSSCP00000075013
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1499,815,203 - 99,885,160 (-)Ensembl
RefSeq Acc Id: XM_001927977   ⟹   XP_001928012
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11499,804,032 - 99,885,499 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005671257   ⟹   XP_005671314
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11499,804,032 - 99,885,562 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013983524   ⟹   XP_013838978
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11499,804,032 - 99,885,120 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073106   ⟹   XP_020928765
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11499,804,032 - 99,881,937 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073107   ⟹   XP_020928766
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11499,817,010 - 99,885,504 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002338602
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11499,804,032 - 99,885,504 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002338603
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11499,802,939 - 99,885,504 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002338604
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11499,802,939 - 99,885,504 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002338605
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11499,804,032 - 99,885,504 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002338606
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11499,802,939 - 99,885,504 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005671314   ⟸   XM_005671257
- Peptide Label: isoform X1
- UniProtKB: F2Z5H2 (UniProtKB/TrEMBL),   A0A4X1V6Z6 (UniProtKB/TrEMBL),   A0A4X1V1L2 (UniProtKB/TrEMBL),   A0A8D0UX60 (UniProtKB/TrEMBL),   A0A8D1LN75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_001928012   ⟸   XM_001927977
- Peptide Label: isoform X1
- UniProtKB: F2Z5H2 (UniProtKB/TrEMBL),   A0A4X1V6Z6 (UniProtKB/TrEMBL),   A0A4X1V1L2 (UniProtKB/TrEMBL),   A0A8D0UX60 (UniProtKB/TrEMBL),   A0A8D1LN75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013838978   ⟸   XM_013983524
- Peptide Label: isoform X1
- UniProtKB: F2Z5H2 (UniProtKB/TrEMBL),   A0A4X1V6Z6 (UniProtKB/TrEMBL),   A0A4X1V1L2 (UniProtKB/TrEMBL),   A0A8D0UX60 (UniProtKB/TrEMBL),   A0A8D1LN75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928765   ⟸   XM_021073106
- Peptide Label: isoform X1
- UniProtKB: A0A4X1V6Z6 (UniProtKB/TrEMBL),   F2Z5H2 (UniProtKB/TrEMBL),   A0A4X1V1L2 (UniProtKB/TrEMBL),   A0A8D0UX60 (UniProtKB/TrEMBL),   A0A8D1LN75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928766   ⟸   XM_021073107
- Peptide Label: isoform X2
- UniProtKB: A0A480F6B5 (UniProtKB/TrEMBL),   A0A4X1V1L2 (UniProtKB/TrEMBL),   A0A8D1LN75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000011127   ⟸   ENSSSCT00000011423
RefSeq Acc Id: ENSSSCP00000075013   ⟸   ENSSSCT00000095806

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010438 Ensembl
  ENSSSCG00000062685 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005012066 UniProtKB/TrEMBL
  ENSSSCG00015060150 UniProtKB/TrEMBL
  ENSSSCG00025060701 UniProtKB/TrEMBL
  ENSSSCG00030002624 UniProtKB/TrEMBL
  ENSSSCG00035050540 UniProtKB/TrEMBL
  ENSSSCG00040036865 UniProtKB/TrEMBL
  ENSSSCG00045029082 UniProtKB/TrEMBL
  ENSSSCG00050018916 UniProtKB/TrEMBL
  ENSSSCG00055000761 UniProtKB/TrEMBL
  ENSSSCG00060063549 UniProtKB/TrEMBL
  ENSSSCG00065035208 UniProtKB/TrEMBL
  ENSSSCG00070021857 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000095806 ENTREZGENE
  ENSSSCT00000095806.1 UniProtKB/TrEMBL
  ENSSSCT00005018735.1 UniProtKB/TrEMBL
  ENSSSCT00005018809.1 UniProtKB/TrEMBL
  ENSSSCT00015080520.1 UniProtKB/TrEMBL
  ENSSSCT00015080719.1 UniProtKB/TrEMBL
  ENSSSCT00015080901.1 UniProtKB/TrEMBL
  ENSSSCT00025083112.1 UniProtKB/TrEMBL
  ENSSSCT00025083308.1 UniProtKB/TrEMBL
  ENSSSCT00030003377.1 UniProtKB/TrEMBL
  ENSSSCT00030003387.1 UniProtKB/TrEMBL
  ENSSSCT00035067351.1 UniProtKB/TrEMBL
  ENSSSCT00035067353.1 UniProtKB/TrEMBL
  ENSSSCT00035067363.1 UniProtKB/TrEMBL
  ENSSSCT00040049377.1 UniProtKB/TrEMBL
  ENSSSCT00045049631.1 UniProtKB/TrEMBL
  ENSSSCT00045049799.1 UniProtKB/TrEMBL
  ENSSSCT00045049942.1 UniProtKB/TrEMBL
  ENSSSCT00050025579.1 UniProtKB/TrEMBL
  ENSSSCT00050025585.1 UniProtKB/TrEMBL
  ENSSSCT00050025600.1 UniProtKB/TrEMBL
  ENSSSCT00055001366.1 UniProtKB/TrEMBL
  ENSSSCT00055001383.1 UniProtKB/TrEMBL
  ENSSSCT00055001398.1 UniProtKB/TrEMBL
  ENSSSCT00060086710.1 UniProtKB/TrEMBL
  ENSSSCT00060086739.1 UniProtKB/TrEMBL
  ENSSSCT00065047943.1 UniProtKB/TrEMBL
  ENSSSCT00065047950.1 UniProtKB/TrEMBL
  ENSSSCT00070043423.1 UniProtKB/TrEMBL
  ENSSSCT00070043429.1 UniProtKB/TrEMBL
  ENSSSCT00070043442.1 UniProtKB/TrEMBL
  ENSSSCT00070043452.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.60 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  ATPase_AAA_CS UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report ssc:100157471 UniProtKB/TrEMBL
NCBI Gene ATAD1 ENTREZGENE
PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED UniProtKB/TrEMBL
  OUTER MITOCHONDRIAL TRANSMEMBRANE HELIX TRANSLOCASE UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/TrEMBL
PROSITE AAA UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A480F6B5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V1L2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V6Z6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V701_PIG UniProtKB/TrEMBL
  A0A8D0UX60 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1LN75 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1YK13_PIG UniProtKB/TrEMBL
  F2Z5H2 ENTREZGENE
UniProt Secondary F2Z5H2 UniProtKB/TrEMBL
VGNC ID VGNC:85598 ENTREZGENE