XPO5 (exportin 5) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: XPO5 (exportin 5) Sus scrofa
Analyze
Symbol: XPO5
Name: exportin 5
RGD ID: 13961994
Description: ENCODES a protein that exhibits pre-miRNA binding (ortholog); INVOLVED IN nuclear export (ortholog); protein export from nucleus (ortholog); PARTICIPATES IN microRNA pathway; ribosome biogenesis pathway; ASSOCIATED WITH breast cancer (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); nucleoplasm (inferred); INTERACTS WITH 3,3',5,5'-tetrabromobisphenol A; bisphenol A; Tetrachlorobisphenol A
Type: protein-coding
RefSeq Status: MODEL
Previously known as: exportin-5; RANBP21
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,531,919 - 38,569,582 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,530,704 - 38,569,558 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,112,962 - 44,152,068 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)
cytosol  (IEA)
nucleoplasm  (IEA)
nucleus  (IBA,IEA)
RISC complex  (IEA)
RNA nuclear export complex  (IBA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
XPO5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,531,919 - 38,569,582 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,530,704 - 38,569,558 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,112,962 - 44,152,068 (-)NCBISscrofa10.2Sscrofa10.2susScr3
XPO5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38643,522,334 - 43,576,038 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl643,522,334 - 43,576,038 (-)EnsemblGRCh38hg38GRCh38
GRCh37643,490,072 - 43,543,775 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,598,050 - 43,651,642 (-)NCBINCBI36Build 36hg18NCBI36
Build 34643,598,052 - 43,651,642NCBI
Celera645,041,689 - 45,095,433 (-)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef643,209,042 - 43,263,034 (-)NCBIHuRef
CHM1_1643,493,200 - 43,546,895 (-)NCBICHM1_1
T2T-CHM13v2.0643,351,073 - 43,404,771 (-)NCBIT2T-CHM13v2.0
Xpo5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,513,737 - 46,554,524 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1746,513,708 - 46,554,524 (+)EnsemblGRCm39 Ensembl
GRCm381746,202,811 - 46,243,598 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,202,782 - 46,243,598 (+)EnsemblGRCm38mm10GRCm38
MGSCv371746,339,804 - 46,379,248 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361745,666,436 - 45,705,880 (+)NCBIMGSCv36mm8
Celera1749,634,152 - 49,675,437 (+)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.9NCBI
Xpo5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,237,760 - 22,275,745 (-)NCBIGRCr8
mRatBN7.2914,740,182 - 14,778,171 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,740,182 - 14,778,171 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx923,324,421 - 23,362,581 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0928,386,905 - 28,425,264 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0926,687,809 - 26,726,003 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0917,125,201 - 17,163,170 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,125,201 - 17,163,170 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0916,021,878 - 16,059,659 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4910,302,751 - 10,341,791 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1910,301,317 - 10,341,202 (-)NCBI
Celera912,487,500 - 12,525,483 (-)NCBICelera
Cytogenetic Map9q12NCBI
Xpo5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,351,045 - 9,392,396 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,351,045 - 9,392,396 (-)NCBIChiLan1.0ChiLan1.0
XPO5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2558,022,543 - 58,076,103 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1653,893,833 - 53,945,887 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0643,114,408 - 43,168,113 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1644,405,234 - 44,458,235 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl644,406,765 - 44,458,029 (-)Ensemblpanpan1.1panPan2
XPO5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11211,983,071 - 12,034,441 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1211,983,646 - 12,034,688 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1212,009,227 - 12,060,892 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01212,466,688 - 12,518,049 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1212,466,783 - 12,518,296 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11211,992,077 - 12,043,519 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01212,078,979 - 12,130,416 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01212,172,464 - 12,224,036 (-)NCBIUU_Cfam_GSD_1.0
Xpo5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,476,762 - 47,525,568 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647616,434,638 - 16,481,044 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647616,434,629 - 16,481,044 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
XPO5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,585,317 - 28,637,045 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1728,585,536 - 28,635,519 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604443,578,186 - 43,630,639 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Xpo5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,083,407 - 16,123,407 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475416,083,356 - 16,124,682 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in XPO5
478 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 6 2 3 5 10 2 3 3
Low 4 2 2 13
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000028506   ⟹   ENSSSCP00000026013
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl738,531,941 - 38,569,531 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000093721   ⟹   ENSSSCP00000075441
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl738,531,919 - 38,569,556 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000095553   ⟹   ENSSSCP00000079335
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl738,531,949 - 38,569,556 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000097032   ⟹   ENSSSCP00000078602
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl738,531,941 - 38,569,531 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000105513   ⟹   ENSSSCP00000077722
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl738,531,942 - 38,569,582 (-)Ensembl
RefSeq Acc Id: XM_005666037   ⟹   XP_005666094
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,530,704 - 38,569,558 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005666094   ⟸   XM_005666037
- UniProtKB: A0A8D1DYY3 (UniProtKB/TrEMBL),   A0A8D1RQ81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000026013   ⟸   ENSSSCT00000028506
RefSeq Acc Id: ENSSSCP00000078602   ⟸   ENSSSCT00000097032
RefSeq Acc Id: ENSSSCP00000075441   ⟸   ENSSSCT00000093721
RefSeq Acc Id: ENSSSCP00000079335   ⟸   ENSSSCT00000095553
RefSeq Acc Id: ENSSSCP00000077722   ⟸   ENSSSCT00000105513

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001679 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025033640 UniProtKB/TrEMBL
  ENSSSCG00030057685 UniProtKB/TrEMBL
  ENSSSCG00035072826 UniProtKB/TrEMBL
  ENSSSCG00040023152 UniProtKB/TrEMBL
  ENSSSCG00045027749 UniProtKB/TrEMBL
  ENSSSCG00055023210 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028506.4 UniProtKB/TrEMBL
  ENSSSCT00000093721 ENTREZGENE
  ENSSSCT00000093721.1 UniProtKB/TrEMBL
  ENSSSCT00000095553.1 UniProtKB/TrEMBL
  ENSSSCT00000097032.1 UniProtKB/TrEMBL
  ENSSSCT00000105513.1 UniProtKB/TrEMBL
  ENSSSCT00025045814.1 UniProtKB/TrEMBL
  ENSSSCT00030080483.1 UniProtKB/TrEMBL
  ENSSSCT00035098633.1 UniProtKB/TrEMBL
  ENSSSCT00040033493.1 UniProtKB/TrEMBL
  ENSSSCT00045047319.1 UniProtKB/TrEMBL
  ENSSSCT00055046835.1 UniProtKB/TrEMBL
  ENSSSCT00055047088.1 UniProtKB/TrEMBL
  ENSSSCT00055047286.1 UniProtKB/TrEMBL
  ENSSSCT00055047505.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Exportin-1/Importin-b-like UniProtKB/TrEMBL
  Exportin-5_C UniProtKB/TrEMBL
  Importin-beta_N UniProtKB/TrEMBL
  XPO1/5 UniProtKB/TrEMBL
KEGG Report ssc:100155084 UniProtKB/TrEMBL
NCBI Gene XPO5 ENTREZGENE
PANTHER PTHR11223 UniProtKB/TrEMBL
  PTHR11223:SF3 UniProtKB/TrEMBL
Pfam Exportin-5 UniProtKB/TrEMBL
  IBN_N UniProtKB/TrEMBL
  Xpo1 UniProtKB/TrEMBL
SMART IBN_N UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8D1CDQ7_PIG UniProtKB/TrEMBL
  A0A8D1DYY3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1RQ81 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1RQR9_PIG UniProtKB/TrEMBL
  A0A8D1RR72_PIG UniProtKB/TrEMBL
  A0A8W4F9D6_PIG UniProtKB/TrEMBL
  A0A8W4FH88_PIG UniProtKB/TrEMBL
  A0A8W4FHD5_PIG UniProtKB/TrEMBL
  A0A8W4FJD8_PIG UniProtKB/TrEMBL
  F1RRJ4_PIG UniProtKB/TrEMBL
VGNC ID VGNC:95005 ENTREZGENE