LOC100738832 (olfactory receptor 4D1)

Gene: LOC100738832 (olfactory receptor 4D1) Sus scrofa

Analyze

Symbol:

LOC100738832 (Ensembl: OR4D1)

Name:

olfactory receptor 4D1 (Ensembl:olfactory receptor family 4 subfamily D member 1)

RGD ID:

13961985

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Joubert syndrome 1 (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	34,420,306 - 34,421,241 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	34,420,306 - 34,421,241 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	36,389,412 - 36,390,302 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

intellectual disability (ISO)

Joubert syndrome 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

sensory perception of smell (IEA)

signal transduction (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

olfactory receptor activity (IBA,IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LOC100738832
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	34,420,306 - 34,421,241 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	34,420,306 - 34,421,241 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	36,389,412 - 36,390,302 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OR4D1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	58,148,384 - 58,159,585 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	58,148,384 - 58,159,585 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	56,225,745 - 56,236,946 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	53,587,514 - 53,588,446 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	53,587,513 - 53,588,446	NCBI
Celera	17	52,694,294 - 52,695,226 (+)	NCBI		Celera
Cytogenetic Map	17	q22	NCBI
HuRef	17	51,593,333 - 51,594,265 (+)	NCBI		HuRef
CHM1_1	17	56,297,548 - 56,298,480 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	59,016,289 - 59,027,481 (+)	NCBI		T2T-CHM13v2.0

Or4d1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	87,804,746 - 87,805,829 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	87,804,094 - 87,811,793 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	87,913,920 - 87,915,003 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	87,913,268 - 87,920,967 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	87,727,422 - 87,728,505 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	87,730,158 - 87,731,099 (-)	NCBI		MGSCv36	mm8
Celera	11	97,509,602 - 97,510,685 (-)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	52.29	NCBI

Olr1523
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	73,205,498 - 73,206,439 (-)	NCBI		GRCr8
mRatBN7.2	10	72,708,272 - 72,709,213 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	72,707,063 - 72,715,311 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	77,318,726 - 77,319,667 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	76,823,672 - 76,824,613 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	72,288,172 - 72,289,113 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	75,201,563 - 75,202,077 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	75,190,653 - 75,202,030 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
RGSC_v3.4	10	76,201,145 - 76,202,086 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	76,215,514 - 76,216,456 (-)	NCBI
Celera	10	71,618,799 - 71,619,740 (-)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

LOC102030371
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955451	4,875,038 - 4,876,053 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC100994150
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	74,321,415 - 74,328,102 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	79,138,127 - 79,139,100 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	52,231,293 - 52,232,510 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	57,087,242 - 57,088,175 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

OR4D1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	32,818,118 - 32,819,059 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	32,818,118 - 32,819,053 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	32,055,883 - 32,056,824 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	33,625,460 - 33,626,401 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	33,625,460 - 33,626,395 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	32,410,223 - 32,411,164 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	32,693,502 - 32,694,443 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	32,777,363 - 32,778,304 (+)	NCBI		UU_Cfam_GSD_1.0

LOC101966402
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	32,162,187 - 32,163,281 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936490	4,911,851 - 4,912,863 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC103242858
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	35,246,885 - 35,248,923 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	35,247,065 - 35,247,997 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	6,062,544 - 6,063,729 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in LOC100738832
53 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013981105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU914501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000063924 ⟹ ENSSSCP00000050034

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	12	34,420,306 - 34,421,241 (+)	Ensembl

RefSeq Acc Id:

XM_013981105 ⟹ XP_013836559

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	34,420,306 - 34,421,241 (+)	NCBI

Sequence:

show sequence

ATGGAACCAGGCAACCTCACTTGGGTATCAGAATTTGTCTTCCTGGGACTCTCACAGACTCGGG
AGCTCCAGCTCCTCTTGTTTCTGGTGTTCTTGTTTGTCTACACCACCACCGTATTAGGAAACCT
CCTCATCATGGTCACCATAACTTTTGACACCCATCTCCACACACCCATGTATTTTCTGCTCCGA
AATCTGGCTGTCATAGACCTCTGCTATTCCACAGTCACTTCCCCAAAGATGCTGGTGGACTTCT
TGCATGACCCCAAGACCATATCCTACCAGAGCTGCATGACTCAGATCTTCTTCTTCCACCTCTT
GGGAGGTGGGACTGTCTTCTTCCTCTCAGTGATGGCCTATGATCGCTACATAGCCATCTCCCGG
CCCCTCCACTATGTCACCATCATGAACACTCAGCTCTGTGTGGGGCTGGTGGTGGCTGCTTGGG
TAGGGGGCTTTCTCCACTCCATTGTTCAGCTGGTTCTGATGCTCCCGCTGCCTTTCTGTGGTCC
CAACATTCTAGACAACTTCTACTGTGACATTCCCCAAGTGCTGAAACTCGCCTGCACAGACACC
TCCCTCCTGGAGTTCCTCATGATCTCCAACAGTGGGATGCTGGTCCTCATCTGGTTCCTCCTCC
TCCTTATCTCCTACTCCGCCATCCTGGTGATGCTGAGGGCCCACTCGGGGCAGGCGAGGAGGAA
GGCAGCTTCCACTTGTACCACCCACATCATTGTTGTGTCTATGATCTTCATTCCCTGTATCTAC
ATCTATGCCCGGCCTTTCACCTCTTTCCCTATGGACAAGGCTGTGTCCATCAGCTACACCGTCA
TGACCCCTATGCTAAACCCTATGATCTACACCCTGAGGAACCAAGAGATGCAGGCAGCCATGAA
GAGATTAGGCAAGCGCCTAGTCCTTTGCAACAGGGAGTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013836559	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000050034
	ENSSSCP00000050034.2
	ENSSSCP00005019423.1
	ENSSSCP00030032862.1
	ENSSSCP00035037125.1
	ENSSSCP00040008817.1
	ENSSSCP00045024694.1
	ENSSSCP00055027793.1
	ENSSSCP00065015245.1
	ENSSSCP00070002566.1

RefSeq Acc Id:

XP_013836559 ⟸ XM_013981105

- UniProtKB:

A0A4X1SJM4 (UniProtKB/TrEMBL), A0A287B0U0 (UniProtKB/TrEMBL), A0A8D1I4R5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEPGNLTWVSEFVFLGLSQTRELQLLLFLVFLFVYTTTVLGNLLIMVTITFDTHLHTPMYFLLR
NLAVIDLCYSTVTSPKMLVDFLHDPKTISYQSCMTQIFFFHLLGGGTVFFLSVMAYDRYIAISR
PLHYVTIMNTQLCVGLVVAAWVGGFLHSIVQLVLMLPLPFCGPNILDNFYCDIPQVLKLACTDT
SLLEFLMISNSGMLVLIWFLLLLISYSAILVMLRAHSGQARRKAASTCTTHIIVVSMIFIPCIY
IYARPFTSFPMDKAVSISYTVMTPMLNPMIYTLRNQEMQAAMKRLGKRLVLCNRE

hide sequence

RefSeq Acc Id:

ENSSSCP00000050034 ⟸ ENSSSCT00000063924

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000044681	Ensembl
	ENSSSCG00000063040	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005020244	UniProtKB/TrEMBL
	ENSSSCG00030051744	UniProtKB/TrEMBL
	ENSSSCG00035065950	UniProtKB/TrEMBL
	ENSSSCG00040015591	UniProtKB/TrEMBL
	ENSSSCG00045020861	UniProtKB/TrEMBL
	ENSSSCG00055017875	UniProtKB/TrEMBL
	ENSSSCG00065026976	UniProtKB/TrEMBL
	ENSSSCG00070001671	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000063924	ENTREZGENE
	ENSSSCT00000063924.2	UniProtKB/TrEMBL
	ENSSSCT00005031864.1	UniProtKB/TrEMBL
	ENSSSCT00030072076.1	UniProtKB/TrEMBL
	ENSSSCT00035088830.1	UniProtKB/TrEMBL
	ENSSSCT00040020995.1	UniProtKB/TrEMBL
	ENSSSCT00045035554.1	UniProtKB/TrEMBL
	ENSSSCT00055035002.1	UniProtKB/TrEMBL
	ENSSSCT00065036312.1	UniProtKB/TrEMBL
	ENSSSCT00070003114.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
NCBI Gene	LOC100738832	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR 4D1	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A287B0U0	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1SJM4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0J777_PIG	UniProtKB/TrEMBL
	A0A8D1CBV6_PIG	UniProtKB/TrEMBL
	A0A8D1DL89_PIG	UniProtKB/TrEMBL
	A0A8D1I4R5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1R3G8_PIG	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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