PROM1 (prominin 1) - Rat Genome Database

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Gene: PROM1 (prominin 1) Sus scrofa
Analyze
Symbol: PROM1
Name: prominin 1
RGD ID: 13960586
Description: ENCODES a protein that exhibits actinin binding (inferred); cadherin binding (inferred); INVOLVED IN retina layer formation (ortholog); retina morphogenesis in camera-type eye (ortholog); ASSOCIATED WITH Colonic Neoplasms (ortholog); Colorectal Neoplasms (ortholog); cone-rod dystrophy (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); cell projection (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: prominin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl811,215,659 - 11,317,312 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1811,215,659 - 11,331,442 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2810,866,626 - 10,987,214 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
PROM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl811,215,659 - 11,317,312 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1811,215,659 - 11,331,442 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2810,866,626 - 10,987,214 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PROM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl415,963,076 - 16,084,378 (-)EnsemblGRCh38hg38GRCh38
GRCh38415,968,226 - 16,084,059 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37415,969,851 - 16,085,646 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36415,578,955 - 15,686,664 (-)NCBINCBI36hg18NCBI36
Build 34415,646,125 - 15,753,835NCBI
Celera416,434,397 - 16,550,164 (-)NCBI
Cytogenetic Map4p15.32NCBI
HuRef415,319,438 - 15,435,190 (-)NCBIHuRef
CHM1_1415,967,639 - 16,083,574 (-)NCBICHM1_1
Prom1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39544,150,963 - 44,260,850 (-)NCBIGRCm39mm39
GRCm39 Ensembl544,150,962 - 44,259,374 (-)Ensembl
GRCm38543,993,621 - 44,102,047 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl543,993,620 - 44,102,032 (-)EnsemblGRCm38mm10GRCm38
MGSCv37544,384,861 - 44,492,975 (-)NCBIGRCm37mm9NCBIm37
MGSCv36544,281,870 - 44,389,929 (-)NCBImm8
Celera541,422,565 - 41,530,564 (-)NCBICelera
Cytogenetic Map5B3NCBI
Prom1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21466,989,545 - 67,094,534 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1466,990,160 - 67,094,527 (+)Ensembl
Rnor_6.01471,532,321 - 71,637,400 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1471,533,063 - 71,637,417 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01471,573,130 - 71,668,097 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41472,122,986 - 72,230,453 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11472,125,409 - 72,232,843 (+)NCBI
Celera1465,949,815 - 66,052,606 (+)NCBICelera
Cytogenetic Map14q21NCBI
Prom1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554807,961,389 - 8,059,589 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554807,955,501 - 8,059,537 (+)NCBIChiLan1.0ChiLan1.0
PROM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1415,702,155 - 15,816,070 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl415,702,159 - 15,815,454 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0410,405,299 - 10,519,518 (-)NCBIMhudiblu_PPA_v0panPan3
PROM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1364,229,487 - 64,362,346 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl364,260,685 - 64,382,009 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha366,778,870 - 66,880,110 (+)NCBI
ROS_Cfam_1.0364,707,547 - 64,840,616 (+)NCBI
UMICH_Zoey_3.1364,228,808 - 64,330,214 (+)NCBI
UNSW_CanFamBas_1.0364,432,846 - 64,534,046 (+)NCBI
UU_Cfam_GSD_1.0364,793,321 - 64,894,543 (+)NCBI
Prom1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528558,176,590 - 58,315,536 (+)NCBI
SpeTri2.0NW_00493647711,878,261 - 12,017,228 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PROM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12734,093,699 - 34,243,630 (+)NCBI
ChlSab1.1 Ensembl2734,129,532 - 34,243,778 (+)Ensembl
Vero_WHO_p1.0NW_02366604780,860,464 - 80,977,347 (+)NCBI
Prom1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475515,765,162 - 15,886,023 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 4 2 22 2 3
Below cutoff 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013978534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013978536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013978537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013978542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013978543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013978544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013978545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013978548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK238027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU095021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01039004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000009568   ⟹   ENSSSCP00000009321
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl811,215,659 - 11,317,220 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000035049   ⟹   ENSSSCP00000030616
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl811,215,668 - 11,317,312 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000051541   ⟹   ENSSSCP00000050189
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl811,215,659 - 11,316,234 (-)Ensembl
RefSeq Acc Id: XM_013978534   ⟹   XP_013833988
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1811,215,659 - 11,316,693 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013978536   ⟹   XP_013833990
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1811,215,659 - 11,317,219 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013978537   ⟹   XP_013833991
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1811,215,659 - 11,317,430 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013978542   ⟹   XP_013833996
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1811,215,659 - 11,331,314 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013978543   ⟹   XP_013833997
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1811,215,659 - 11,316,693 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013978544   ⟹   XP_013833998
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1811,215,664 - 11,316,693 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013978545   ⟹   XP_013833999
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1811,215,663 - 11,316,693 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013978548   ⟹   XP_013834002
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1811,215,659 - 11,316,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021101023   ⟹   XP_020956682
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1811,215,659 - 11,331,442 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021101024   ⟹   XP_020956683
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1811,215,659 - 11,313,685 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021101025   ⟹   XP_020956684
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1811,215,663 - 11,317,213 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021101026   ⟹   XP_020956685
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1811,215,663 - 11,309,878 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021101027   ⟹   XP_020956686
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1811,215,663 - 11,317,430 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021101028   ⟹   XP_020956687
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1811,215,659 - 11,316,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021101029   ⟹   XP_020956688
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1811,215,659 - 11,270,500 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020956682   ⟸   XM_021101023
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013833996   ⟸   XM_013978542
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013833991   ⟸   XM_013978537
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013833990   ⟸   XM_013978536
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013834002   ⟸   XM_013978548
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020956687   ⟸   XM_021101028
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013833997   ⟸   XM_013978543
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013833988   ⟸   XM_013978534
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020956683   ⟸   XM_021101024
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020956688   ⟸   XM_021101029
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_020956686   ⟸   XM_021101027
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020956684   ⟸   XM_021101025
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013833999   ⟸   XM_013978545
- Peptide Label: isoform X4
- UniProtKB: F1S5C8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956685   ⟸   XM_021101026
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013833998   ⟸   XM_013978544
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSSSCP00000030616   ⟸   ENSSSCT00000035049
RefSeq Acc Id: ENSSSCP00000009321   ⟸   ENSSSCT00000009568
RefSeq Acc Id: ENSSSCP00000050189   ⟸   ENSSSCT00000051541


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008745 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070023429 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000009321 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000030616 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000050189 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070039421 UniProtKB/TrEMBL
  ENSSSCP00070039425 UniProtKB/TrEMBL
  ENSSSCP00070039429 UniProtKB/TrEMBL
  ENSSSCP00070039437 UniProtKB/TrEMBL
  ENSSSCP00070039440 UniProtKB/TrEMBL
  ENSSSCP00070039442 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000009568 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000035049 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000051541 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070046732 UniProtKB/TrEMBL
  ENSSSCT00070046738 UniProtKB/TrEMBL
  ENSSSCT00070046743 UniProtKB/TrEMBL
  ENSSSCT00070046753 UniProtKB/TrEMBL
  ENSSSCT00070046757 UniProtKB/TrEMBL
  ENSSSCT00070046759 UniProtKB/TrEMBL
InterPro Prominin UniProtKB/TrEMBL
NCBI Gene PROM1 ENTREZGENE
PANTHER PTHR22730 UniProtKB/TrEMBL
Pfam Prominin UniProtKB/TrEMBL
UniProt A0A287B1A8_PIG UniProtKB/TrEMBL
  A0A4X1VCN1_PIG UniProtKB/TrEMBL
  A0A4X1VCU4_PIG UniProtKB/TrEMBL
  A0A4X1VFA1_PIG UniProtKB/TrEMBL
  A0A5K1U896_PIG UniProtKB/TrEMBL
  F1S5C8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary K7GRT6 UniProtKB/TrEMBL
VGNC ID VGNC:91832 ENTREZGENE