LOC100157798 (olfactory receptor 4N2)

Gene: LOC100157798 (olfactory receptor 4N2) Sus scrofa

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Symbol:

LOC100157798

Name:

olfactory receptor 4N2

RGD ID:

13956246

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

olfactory receptor 4N4

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	7	79,003,689 - 79,004,969 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	133,543,058 - 133,543,984 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

sensory perception of smell (IEA)

signal transduction (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

olfactory receptor activity (IBA,IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LOC100157798
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	7	79,003,689 - 79,004,969 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	133,543,058 - 133,543,984 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OR4N4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	22,094,522 - 22,095,862 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	22,094,522 - 22,095,862 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	22,382,473 - 22,383,813 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	19,883,837 - 19,884,787 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	19,883,836 - 19,884,787	NCBI
Celera	15	246,446 - 247,396 (-)	NCBI		Celera
Cytogenetic Map	15	q11.2	NCBI
HuRef	15	783,093 - 784,435 (+)	NCBI		HuRef
CHM1_1	15	22,324,624 - 22,325,965 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	19,000,207 - 19,001,547 (+)	NCBI		T2T-CHM13v2.0

Or4n4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	50,518,685 - 50,519,728 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	50,515,930 - 50,521,663 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	50,281,228 - 50,282,271 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	50,278,473 - 50,284,206 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	50,900,903 - 50,901,946 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	49,203,276 - 49,204,202 (-)	NCBI		MGSCv36	mm8
Celera	14	46,515,083 - 46,516,126 (-)	NCBI		Celera
Cytogenetic Map	14	C1	NCBI
cM Map	14	26.03	NCBI

Or4n4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	25,968,149 - 25,969,140 (+)	NCBI		GRCr8
mRatBN7.2	15	23,494,563 - 23,495,554 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	23,492,445 - 23,498,563 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	15	27,076,234 - 27,077,198 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	27,076,234 - 27,077,160 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
RGSC_v3.4	15	26,020,147 - 26,022,189 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	26,035,846 - 26,036,755 (+)	NCBI
Celera	15	23,826,467 - 23,827,527 (+)	NCBI		Celera
Cytogenetic Map	15	p14	NCBI

OR4N2B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	17,248,135 - 17,249,061 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	17,248,135 - 17,249,061 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	17,711,912 - 17,712,838 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	17,505,492 - 17,506,418 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	17,505,492 - 17,506,418 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	17,191,361 - 17,192,287 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	17,246,667 - 17,247,593 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	17,371,312 - 17,372,238 (-)	NCBI		UU_Cfam_GSD_1.0

Variants

Variants in LOC100157798
104 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013997656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU469423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_013997656 ⟹ XP_013853110

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	79,003,689 - 79,004,969 (+)	NCBI

Sequence:

show sequence

CATTTCAAATAAAACTTCAGCAATTGATATCTGTGTTTAAGTTTTTTCTCTGTCAGAAAAATGT
TCATATATCTCACAAAAATCATGAACAAATCCAGGTCAGGACAGAGTGCTGCACGAGAGAGCAA
TTAAATTGGAACACAGGACAGAGGTGACAAGGGTAGCTTCAAGACAAGGGAGTTGGTGCTTATG
ATTTATAGAAGACTAAAGGGTAGAAGAGATTTCTTACTTTGTGGGAGGGTCATGGTGTAACATA
GATGTAGAATACACAAGTTTTAGTTATAGAAGAACTATAACCTAGATGAAAGAATGGAAATAAA
TCCTCTATTCCCTGATGTACTGCAGGCAGAGGAGATGGAGATTAAAAACAGCACTTTGGTAACA
GAATTTATCCTCCTTGGTCTGACTCAGTCTCGAAATATTCAGCTCCTGGTTTTTGTCCTGATCT
TAATTTTCTATTTCATCATCCTCCCTGGAAACTTCCTCATCATCCTCACCATCAGGTCAGACCC
TGGCCTCACGGCTCCACTCTACTTCTTTCTGGGCAACTTGGCCTTCCTGGATGCATCCTACTCC
TTCATCGTGGCTCCCAGGATGCTGGTGGACTTCCTCTCTGAGAAGAAGGTGATCTCCTACAGAG
GCTGCATCACTCAGCTCTTTTTCTTGCACTTCCTTGGAGGAGGGGAGGGGTTACTCCTGGTAGT
GATGGCCTTGGACCGCTACATTGCCATCTGTCGTCCTTTACACTACTCAACTGTCATGAACCCT
AGAGCCTGCTATGCCTTGCTCGTGGCTCTGTGGCTTGGAGGCTTTGTCCACTCCATCATCCAGG
TGGCCCTCATCCTCCACTTGCCCTTCTGTGGTCCAAACCGACTAGACAACTTCTTCTGTGATGT
GCCACAGGTCATCAAGCTGGCCTGCACTGACACCTTTGTGGTGGAGCTCCTGATGGTCTTCAAC
AGTGGCTTGCTCACCCTCATATGTTTTCTGGGGCTTCTGGCCTCCTATGCCGTCATCCTCTGCC
ATGTACGTGGGTCTGCTTCTGAAGGGAAGAGCAAGGCTCTGTCCACATGCACGACTCACATCAT
CATCATACTTCTCATGTTTGGACCTGCCATCTTTATCTACACCCGTCCTTTCAGAGCTTTACCA
GCTGACAAGGTGGTTTCTTTTTTCCACACAGTTGTCTTTCCTTTGATGAACCCTGTGATTTATA
CCCTTCGCAACCAGGAAGTGAAATCTTCTATGAGGAGGATATTAAGCCGGCATGTGGTTTGTTG
A

hide sequence

Protein Sequences


Protein RefSeqs	XP_013853110	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000045906
	ENSSSCP00000045906.2
	ENSSSCP00070015079.1

RefSeq Acc Id:

XP_013853110 ⟸ XM_013997656

- UniProtKB:

A0A287APU5 (UniProtKB/TrEMBL), A0A4X1TF50 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEINPLFPDVLQAEEMEIKNSTLVTEFILLGLTQSRNIQLLVFVLILIFYFIILPGNFLIILTI
RSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEGL
LLVVMALDRYIAICRPLHYSTVMNPRACYALLVALWLGGFVHSIIQVALILHLPFCGPNRLDNF
FCDVPQVIKLACTDTFVVELLMVFNSGLLTLICFLGLLASYAVILCHVRGSASEGKSKALSTCT
THIIIILLMFGPAIFIYTRPFRALPADKVVSFFHTVVFPLMNPVIYTLRNQEVKSSMRRILSRH
VVC

hide sequence

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000049843	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00070009362	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000058981	ENTREZGENE
	ENSSSCT00000058981.2	UniProtKB/TrEMBL
	ENSSSCT00070018154.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
NCBI Gene	LOC100157798	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR-RELATED	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A287APU5	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1TF50	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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