KITLG (KIT ligand) - Rat Genome Database

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Gene: KITLG (KIT ligand) Sus scrofa
Analyze
Symbol: KITLG
Name: KIT ligand
RGD ID: 13955299
Description: ENCODES a protein that exhibits cytokine activity (inferred); growth factor activity (inferred); stem cell factor receptor binding (inferred); INVOLVED IN apoptotic process (ortholog); cell population proliferation (ortholog); ectopic germ cell programmed cell death (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); autosomal dominant nonsyndromic deafness 69 (ortholog); carcinoma (ortholog); FOUND IN cytoplasm (ortholog); filopodium (ortholog); lamellipodium (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: c-kit ligand; KIT ligand protein; KITL; mast cell growth factor; MGF; SCF; stem cell factor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl594,017,387 - 94,110,214 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1594,016,992 - 94,110,219 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2598,745,850 - 98,834,052 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:7508758   PMID:12941156   PMID:16441305   PMID:17475461   PMID:17965540   PMID:18318788   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KITLG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl594,017,387 - 94,110,214 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1594,016,992 - 94,110,219 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2598,745,850 - 98,834,052 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KITLG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381288,492,793 - 88,580,471 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1288,492,793 - 88,580,851 (-)EnsemblGRCh38hg38GRCh38
GRCh371288,886,570 - 88,974,248 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361287,410,697 - 87,498,369 (-)NCBINCBI36Build 36hg18NCBI36
Build 341287,389,036 - 87,476,706NCBI
Celera1288,556,999 - 88,644,657 (-)NCBICelera
Cytogenetic Map12q21.32NCBI
HuRef1285,953,228 - 86,040,884 (-)NCBIHuRef
CHM1_11288,851,652 - 88,939,322 (-)NCBICHM1_1
T2T-CHM13v2.01288,474,752 - 88,562,405 (-)NCBIT2T-CHM13v2.0
Kitl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391099,851,477 - 99,936,278 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1099,851,492 - 99,936,278 (+)EnsemblGRCm39 Ensembl
GRCm3810100,015,615 - 100,100,416 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10100,015,630 - 100,100,416 (+)EnsemblGRCm38mm10GRCm38
MGSCv371099,478,458 - 99,563,046 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361099,445,512 - 99,530,100 (+)NCBIMGSCv36mm8
Celera10101,983,926 - 102,068,221 (+)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1051.4NCBI
Kitlg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8736,782,621 - 36,863,796 (+)NCBIGRCr8
mRatBN7.2734,896,075 - 34,977,215 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl734,896,053 - 34,977,214 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx736,884,748 - 36,965,896 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0739,066,514 - 39,147,673 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0738,799,729 - 38,880,883 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0742,269,784 - 42,351,054 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl742,269,784 - 42,351,054 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0742,302,651 - 42,383,921 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4737,714,157 - 37,795,722 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1737,734,427 - 37,804,538 (+)NCBI
Celera731,898,840 - 31,979,932 (+)NCBICelera
RH 3.4 Map7286.2RGD
Cytogenetic Map7q21NCBI
Kitlg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540525,886,447 - 25,969,395 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540525,816,137 - 25,969,006 (-)NCBIChiLan1.0ChiLan1.0
KITLG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21096,547,522 - 96,623,042 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11296,527,362 - 96,619,438 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01286,036,501 - 86,124,274 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11289,341,921 - 89,436,081 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1289,341,921 - 89,436,758 (-)Ensemblpanpan1.1panPan2
KITLG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11529,591,068 - 29,671,985 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1529,591,170 - 29,671,974 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1530,041,648 - 30,122,153 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01530,230,533 - 30,311,189 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1530,230,587 - 30,311,541 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11529,545,261 - 29,626,200 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01529,607,389 - 29,688,442 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01529,890,288 - 29,970,909 (-)NCBIUU_Cfam_GSD_1.0
Kitlg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494530,584,662 - 30,669,431 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365075,565,821 - 5,650,828 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365075,566,144 - 5,650,412 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KITLG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11183,856,149 - 83,943,095 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1183,856,157 - 83,943,083 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037161,319,600 - 161,407,409 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kitlg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248377,456,120 - 7,541,730 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248377,456,116 - 7,541,764 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KITLG
3963 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 7 3 5 4 2 1 1
Low 3 1 3 2 19 2
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000055388   ⟹   ENSSSCP00000051313
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl594,017,387 - 94,110,214 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000061210   ⟹   ENSSSCP00000056565
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl594,017,425 - 94,110,205 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000080805   ⟹   ENSSSCP00000066430
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl594,017,388 - 94,106,675 (+)Ensembl
RefSeq Acc Id: NM_214269   ⟹   NP_999434
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1594,017,403 - 94,098,152 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021091141   ⟹   XP_020946800
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1594,016,992 - 94,110,219 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021091142   ⟹   XP_020946801
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1594,017,119 - 94,110,219 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020946800   ⟸   XM_021091141
- Peptide Label: isoform X1
- UniProtKB: Q2WG86 (UniProtKB/Swiss-Prot),   Q29030 (UniProtKB/Swiss-Prot),   A0A1B2TT44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946801   ⟸   XM_021091142
- Peptide Label: isoform X2
- UniProtKB: A0A287B5E0 (UniProtKB/TrEMBL),   A0A8D0T2S6 (UniProtKB/TrEMBL),   A0A8D0U205 (UniProtKB/TrEMBL),   A0A8D0XFT5 (UniProtKB/TrEMBL),   A0A8D0YV35 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_999434   ⟸   NM_214269
- Peptide Label: precursor
- UniProtKB: Q2WG86 (UniProtKB/Swiss-Prot),   Q29030 (UniProtKB/Swiss-Prot),   A0A1B2TT44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000066430   ⟸   ENSSSCT00000080805
RefSeq Acc Id: ENSSSCP00000056565   ⟸   ENSSSCT00000061210
RefSeq Acc Id: ENSSSCP00000051313   ⟸   ENSSSCT00000055388


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035495 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005043552 UniProtKB/TrEMBL
  ENSSSCG00015035338 UniProtKB/TrEMBL
  ENSSSCG00025066393 UniProtKB/TrEMBL
  ENSSSCG00030053511 UniProtKB/TrEMBL
  ENSSSCG00035013703 UniProtKB/TrEMBL
  ENSSSCG00040062875 UniProtKB/TrEMBL
  ENSSSCG00045009175 UniProtKB/TrEMBL
  ENSSSCG00050072335 UniProtKB/TrEMBL
  ENSSSCG00055016711 UniProtKB/TrEMBL
  ENSSSCG00065054490 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000055388 ENTREZGENE
  ENSSSCT00000055388.3 UniProtKB/TrEMBL
  ENSSSCT00005069925.1 UniProtKB/TrEMBL
  ENSSSCT00005069941.1 UniProtKB/TrEMBL
  ENSSSCT00005069947.1 UniProtKB/TrEMBL
  ENSSSCT00005069958.1 UniProtKB/TrEMBL
  ENSSSCT00015047339.1 UniProtKB/TrEMBL
  ENSSSCT00015047434.1 UniProtKB/TrEMBL
  ENSSSCT00015047528.1 UniProtKB/TrEMBL
  ENSSSCT00025091245.1 UniProtKB/TrEMBL
  ENSSSCT00030074690.1 UniProtKB/TrEMBL
  ENSSSCT00035017320.1 UniProtKB/TrEMBL
  ENSSSCT00040085843.1 UniProtKB/TrEMBL
  ENSSSCT00040085988.1 UniProtKB/TrEMBL
  ENSSSCT00040086110.1 UniProtKB/TrEMBL
  ENSSSCT00045015593.1 UniProtKB/TrEMBL
  ENSSSCT00045015643.1 UniProtKB/TrEMBL
  ENSSSCT00045015707.1 UniProtKB/TrEMBL
  ENSSSCT00050098756.1 UniProtKB/TrEMBL
  ENSSSCT00050098759.1 UniProtKB/TrEMBL
  ENSSSCT00055033065.1 UniProtKB/TrEMBL
  ENSSSCT00065074643.1 UniProtKB/TrEMBL
  ENSSSCT00065074647.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro 4_helix_cytokine-like_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:397509 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene KITLG ENTREZGENE
PANTHER KIT LIGAND UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11574 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SCF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PIRSF SCF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47266 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B2TT44 ENTREZGENE, UniProtKB/TrEMBL
  A0A287B5E0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0M1J0_PIG UniProtKB/TrEMBL
  A0A8D0M1K7_PIG UniProtKB/TrEMBL
  A0A8D0M1P8_PIG UniProtKB/TrEMBL
  A0A8D0M216_PIG UniProtKB/TrEMBL
  A0A8D0NGB4_PIG UniProtKB/TrEMBL
  A0A8D0NLC5_PIG UniProtKB/TrEMBL
  A0A8D0T2S6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0U205 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0XFT5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YV35 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FGW8_PIG UniProtKB/TrEMBL
  A0A8D1GX59_PIG UniProtKB/TrEMBL
  A0A8D1KT11_PIG UniProtKB/TrEMBL
  A0A8D1KT16_PIG UniProtKB/TrEMBL
  A0A8D1NQ50_PIG UniProtKB/TrEMBL
  A0A8D1TP95_PIG UniProtKB/TrEMBL
  Q29030 ENTREZGENE
  Q2WG86 ENTREZGENE
  SCF_PIG UniProtKB/Swiss-Prot
UniProt Secondary Q2WG86 UniProtKB/Swiss-Prot
VGNC ID VGNC:98061 ENTREZGENE