PTPRJ (protein tyrosine phosphatase receptor type J) - Rat Genome Database

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Gene: PTPRJ (protein tyrosine phosphatase receptor type J) Sus scrofa
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Symbol: PTPRJ
Name: protein tyrosine phosphatase receptor type J
RGD ID: 13955131
Description: ENCODES a protein that exhibits beta-catenin binding (inferred); cadherin binding (inferred); delta-catenin binding (inferred); INVOLVED IN heart development (ortholog); oligodendrocyte differentiation (ortholog); vasculogenesis (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; platelet-derived growth factor signaling pathway; somatostatin signaling pathway; ASSOCIATED WITH colon carcinoma (ortholog); colorectal cancer (ortholog); Colorectal Neoplasms (ortholog); FOUND IN cell surface (inferred); cell-cell junction (inferred); immunological synapse (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: receptor-type tyrosine-protein phosphatase eta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl214,548,428 - 14,724,474 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1214,548,489 - 14,724,823 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2215,632,255 - 16,007,397 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
B cell differentiation  (IEA)
blood coagulation  (IEA)
calcium-mediated signaling using intracellular calcium source  (IEA)
glucose homeostasis  (IEA)
heart development  (IEA,ISO)
negative regulation of cell growth  (IEA)
negative regulation of cell migration  (IEA)
negative regulation of cell population proliferation  (IEA)
negative regulation of epidermal growth factor receptor signaling pathway  (IEA)
negative regulation of insulin receptor signaling pathway  (IEA)
negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction  (IEA)
negative regulation of platelet-derived growth factor receptor signaling pathway  (IEA)
negative regulation of T cell receptor signaling pathway  (IEA)
negative regulation of vascular permeability  (IEA)
oligodendrocyte differentiation  (IEA,ISO)
platelet-derived growth factor receptor signaling pathway  (IEA)
positive chemotaxis  (IEA)
positive regulation of cell adhesion  (IEA)
positive regulation of cell-matrix adhesion  (IEA)
positive regulation of Fc receptor mediated stimulatory signaling pathway  (IEA)
positive regulation of focal adhesion assembly  (IEA)
positive regulation of macrophage chemotaxis  (IEA)
positive regulation of MAPK cascade  (IEA)
positive regulation of peptidyl-tyrosine phosphorylation  (IEA)
positive regulation of phagocytosis  (IEA)
positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction  (IEA)
positive regulation of platelet activation  (IEA)
positive regulation of tumor necrosis factor production  (IEA)
regulation of cell adhesion  (IEA)
vasculogenesis  (IEA,ISO)

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PTPRJ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl214,548,428 - 14,724,474 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1214,548,489 - 14,724,823 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2215,632,255 - 16,007,397 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTPRJ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381147,980,559 - 48,170,839 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1147,980,425 - 48,170,839 (+)EnsemblGRCh38hg38GRCh38
GRCh371148,002,111 - 48,192,391 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361147,958,686 - 48,148,970 (+)NCBINCBI36Build 36hg18NCBI36
Build 341147,958,688 - 48,146,246NCBI
Celera1148,154,504 - 48,344,533 (+)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1147,683,384 - 47,903,543 (+)NCBIHuRef
CHM1_11148,001,881 - 48,191,974 (+)NCBICHM1_1
T2T-CHM13v2.01148,150,119 - 48,340,376 (+)NCBIT2T-CHM13v2.0
Ptprj
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39290,260,100 - 90,411,102 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl290,260,098 - 90,410,939 (-)EnsemblGRCm39 Ensembl
GRCm38290,429,756 - 90,580,694 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl290,429,754 - 90,580,647 (-)EnsemblGRCm38mm10GRCm38
MGSCv37290,269,913 - 90,420,804 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36290,233,731 - 90,381,407 (-)NCBIMGSCv36mm8
Celera291,810,313 - 91,967,158 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.19NCBI
Ptprj
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8396,861,785 - 97,017,702 (-)NCBIGRCr8
mRatBN7.2376,405,917 - 76,561,842 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl376,405,927 - 76,562,260 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx379,890,269 - 80,046,200 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0388,488,786 - 88,644,719 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0386,341,245 - 86,497,188 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0379,233,519 - 79,390,956 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl379,233,525 - 79,390,956 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0385,947,682 - 86,099,287 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4374,796,764 - 74,935,540 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1374,693,135 - 74,831,912 (-)NCBI
Celera375,621,921 - 75,777,388 (-)NCBICelera
Cytogenetic Map3q24NCBI
Ptprj
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955422399,357 - 443,054 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955422396,266 - 438,792 (-)NCBIChiLan1.0ChiLan1.0
PTPRJ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2950,196,084 - 50,386,550 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11150,215,619 - 50,406,485 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01147,941,134 - 48,130,538 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11148,518,844 - 48,672,844 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1148,613,761 - 48,670,494 (+)Ensemblpanpan1.1panPan2
PTPRJ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11841,586,262 - 41,635,386 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1841,586,112 - 41,635,308 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1840,315,308 - 40,366,352 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01842,238,579 - 42,289,675 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1842,238,586 - 42,285,426 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11841,727,516 - 41,778,615 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01841,280,105 - 41,331,461 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01842,009,997 - 42,061,288 (-)NCBIUU_Cfam_GSD_1.0
Ptprj
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494719,050,113 - 19,123,158 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365621,165,304 - 1,211,817 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365621,161,764 - 1,234,800 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPRJ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,137,896 - 17,328,836 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,135,907 - 17,328,590 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038114,433,977 - 114,653,560 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptprj
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624767945,553 - 1,051,138 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624767942,786 - 1,051,112 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PTPRJ
6338 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 6 2 3 5 11 2 3 3
Low 4 2 2 12
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000022326   ⟹   ENSSSCP00000021335
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl214,549,532 - 14,724,843 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000037559   ⟹   ENSSSCP00000054493
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl214,549,505 - 14,630,240 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000039654   ⟹   ENSSSCP00000048299
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl214,549,505 - 14,726,715 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000055946   ⟹   ENSSSCP00000050412
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl214,548,428 - 14,724,474 (-)Ensembl
RefSeq Acc Id: XM_021083062   ⟹   XP_020938721
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1214,548,489 - 14,724,823 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020938721 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000050412
  ENSSSCP00000050412.2
  ENSSSCP00065034650.1
RefSeq Acc Id: XP_020938721   ⟸   XM_021083062
- UniProtKB: A0A8D1ZBB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000048299   ⟸   ENSSSCT00000039654
RefSeq Acc Id: ENSSSCP00000050412   ⟸   ENSSSCT00000055946
RefSeq Acc Id: ENSSSCP00000054493   ⟸   ENSSSCT00000037559
RefSeq Acc Id: ENSSSCP00000021335   ⟸   ENSSSCT00000022326

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000023709 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00065058241 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000055946 ENTREZGENE
  ENSSSCT00000055946.3 UniProtKB/TrEMBL
  ENSSSCT00065079682.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.90.190.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  PTPase_domain UniProtKB/TrEMBL
  PTPRJ_TM UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/TrEMBL
NCBI Gene PTPRJ ENTREZGENE
PANTHER CYTOKINE RECEPTOR UniProtKB/TrEMBL
  RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE BETA UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  PTP_tm UniProtKB/TrEMBL
  Y_phosphatase UniProtKB/TrEMBL
PRINTS PRTYPHPHTASE UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  PTPc UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
  SSF52799 UniProtKB/TrEMBL
UniProt A0A287B2T2_PIG UniProtKB/TrEMBL
  A0A8D1ZBB5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:91990 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-19 PTPRJ  protein tyrosine phosphatase receptor type J    protein tyrosine phosphatase, receptor type J  Symbol and/or name change 5135510 APPROVED