APOC2 (apolipoprotein C2) - Rat Genome Database

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Gene: APOC2 (apolipoprotein C2) Sus scrofa
Analyze
Symbol: APOC2
Name: apolipoprotein C2
RGD ID: 13952782
Description: ENCODES a protein that exhibits identical protein binding (ortholog); lipase inhibitor activity (ortholog); molecular function activator activity (ortholog); INVOLVED IN cholesterol efflux (ortholog); lipoprotein transport (ortholog); negative regulation of cholesterol transport (ortholog); PARTICIPATES IN altered lipoprotein metabolic pathway; lipoprotein metabolic pathway; ASSOCIATED WITH Acute Liver Failure (ortholog); Coronary Disease (ortholog); diabetes mellitus (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: apolipoprotein C-II
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1651,404,219 - 51,406,302 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,285,954 - 47,288,054 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
APOC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1651,404,219 - 51,406,302 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,285,954 - 47,288,054 (+)NCBISscrofa10.2Sscrofa10.2susScr3
APOC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381944,946,051 - 44,949,565 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1944,946,035 - 44,949,565 (+)EnsemblGRCh38hg38GRCh38
GRCh371945,449,308 - 45,452,822 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,141,083 - 50,144,658 (+)NCBINCBI36Build 36hg18NCBI36
Build 341950,141,082 - 50,144,657NCBI
Celera1942,253,565 - 42,257,132 (+)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1941,879,798 - 41,883,381 (+)NCBIHuRef
CHM1_11945,452,071 - 45,455,660 (+)NCBICHM1_1
T2T-CHM13v2.01947,770,875 - 47,774,393 (+)NCBIT2T-CHM13v2.0
Apoc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,405,504 - 19,411,866 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl719,405,504 - 19,411,866 (-)EnsemblGRCm39 Ensembl
GRCm38719,671,579 - 19,677,941 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,671,579 - 19,677,941 (-)EnsemblGRCm38mm10GRCm38
MGSCv37720,256,928 - 20,262,213 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36718,830,106 - 18,836,463 (-)NCBIMGSCv36mm8
Celera717,077,835 - 17,082,947 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.94NCBI
Apoc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2179,329,429 - 79,334,397 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,329,428 - 79,334,476 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0180,589,023 - 80,593,991 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,589,023 - 80,594,136 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,854,610 - 81,859,580 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4178,979,034 - 78,984,002 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera173,788,729 - 73,793,701 (-)NCBICelera
Cytogenetic Map1q21NCBI
Apoc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555552,016,217 - 2,021,830 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555552,019,547 - 2,021,543 (+)NCBIChiLan1.0ChiLan1.0
APOC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11950,498,109 - 50,501,877 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01941,892,954 - 41,896,461 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
APOC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,504,806 - 110,506,986 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,504,815 - 110,506,961 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1109,985,886 - 109,987,967 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01111,034,576 - 111,036,727 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1111,034,585 - 111,036,734 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,709,344 - 110,711,427 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01110,344,763 - 110,346,846 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01111,213,632 - 111,215,715 (-)NCBIUU_Cfam_GSD_1.0
Apoc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,183,204 - 17,184,690 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367061,531,219 - 1,531,921 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APOC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1638,406,829 - 38,411,239 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl638,409,641 - 38,410,927 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607317,985,436 - 17,990,512 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Apoc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249071,765,481 - 1,769,781 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249071,765,467 - 1,769,786 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: NM_001177328   ⟹   NP_001170799
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1651,404,283 - 51,406,297 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005653279   ⟹   XP_005653336
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1651,404,219 - 51,406,302 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001170799 (Get FASTA)   NCBI Sequence Viewer  
  XP_005653336 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ADC91996 (Get FASTA)   NCBI Sequence Viewer  
  ADC91997 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005653336   ⟸   XM_005653279
- Peptide Label: isoform X1
- UniProtKB: D3Y264 (UniProtKB/TrEMBL),   A0A4X1W295 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001170799   ⟸   NM_001177328
- Peptide Label: precursor
- UniProtKB: D3Y264 (UniProtKB/TrEMBL),   A0A4X1W295 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003086 UniProtKB/TrEMBL
  ENSSSCG00015003336 UniProtKB/TrEMBL
  ENSSSCG00025042329 UniProtKB/TrEMBL
  ENSSSCG00030026265 UniProtKB/TrEMBL
  ENSSSCG00035071606 UniProtKB/TrEMBL
  ENSSSCG00040038253 UniProtKB/TrEMBL
  ENSSSCG00045037535 UniProtKB/TrEMBL
  ENSSSCG00050032304 UniProtKB/TrEMBL
  ENSSSCG00055005873 UniProtKB/TrEMBL
  ENSSSCG00060023613 UniProtKB/TrEMBL
  ENSSSCG00065000602 UniProtKB/TrEMBL
  ENSSSCG00070028324 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000003341.3 UniProtKB/TrEMBL
  ENSSSCP00000033486.2 UniProtKB/TrEMBL
  ENSSSCP00000071844.1 UniProtKB/TrEMBL
  ENSSSCP00015001530.1 UniProtKB/TrEMBL
  ENSSSCP00025024264.1 UniProtKB/TrEMBL
  ENSSSCP00030016784.1 UniProtKB/TrEMBL
  ENSSSCP00035040816.1 UniProtKB/TrEMBL
  ENSSSCP00040021256.1 UniProtKB/TrEMBL
  ENSSSCP00045045806.1 UniProtKB/TrEMBL
  ENSSSCP00050017903.1 UniProtKB/TrEMBL
  ENSSSCP00055009057.1 UniProtKB/TrEMBL
  ENSSSCP00060013731.1 UniProtKB/TrEMBL
  ENSSSCP00065000159.1 UniProtKB/TrEMBL
  ENSSSCP00070048268.1 UniProtKB/TrEMBL
  ENSSSCP00070048269.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003424.4 UniProtKB/TrEMBL
  ENSSSCT00000051607.2 UniProtKB/TrEMBL
  ENSSSCT00000078097.1 UniProtKB/TrEMBL
  ENSSSCT00015004270.1 UniProtKB/TrEMBL
  ENSSSCT00025057374.1 UniProtKB/TrEMBL
  ENSSSCT00030036685.1 UniProtKB/TrEMBL
  ENSSSCT00035096843.1 UniProtKB/TrEMBL
  ENSSSCT00040051200.1 UniProtKB/TrEMBL
  ENSSSCT00045064799.1 UniProtKB/TrEMBL
  ENSSSCT00050043364.1 UniProtKB/TrEMBL
  ENSSSCT00055011453.1 UniProtKB/TrEMBL
  ENSSSCT00060032040.1 UniProtKB/TrEMBL
  ENSSSCT00065000698.1 UniProtKB/TrEMBL
  ENSSSCT00070056809.1 UniProtKB/TrEMBL
  ENSSSCT00070056810.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1440.10 UniProtKB/TrEMBL
InterPro Apo-CII UniProtKB/TrEMBL
  ApoC-II_dom_sf UniProtKB/TrEMBL
  APOC4 UniProtKB/TrEMBL
KEGG Report ssc:100381252 UniProtKB/TrEMBL
NCBI Gene APOC2 ENTREZGENE
PANTHER PTHR16566 UniProtKB/TrEMBL
  PTHR32288 UniProtKB/TrEMBL
Pfam Apo-CII UniProtKB/TrEMBL
  APOC4 UniProtKB/TrEMBL
UniProt A0A286ZPG0_PIG UniProtKB/TrEMBL
  A0A4X1W295 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W446_PIG UniProtKB/TrEMBL
  A0A5G2RJ79_PIG UniProtKB/TrEMBL
  D3Y264 ENTREZGENE, UniProtKB/TrEMBL
  F6PSJ3_PIG UniProtKB/TrEMBL
VGNC ID VGNC:110413 ENTREZGENE