KHSRP (KH-type splicing regulatory protein) - Rat Genome Database

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Gene: KHSRP (KH-type splicing regulatory protein) Sus scrofa
Analyze
Symbol: KHSRP
Name: KH-type splicing regulatory protein
RGD ID: 13951608
Description: ENCODES a protein that exhibits mRNA 3'-UTR AU-rich region binding (ortholog); mRNA 3'-UTR binding (ortholog); protein folding chaperone (ortholog); INVOLVED IN 3'-UTR-mediated mRNA destabilization (ortholog); cellular response to cytokine stimulus (ortholog); miRNA metabolic process (ortholog); ASSOCIATED WITH lung small cell carcinoma (ortholog); mucolipidosis type IV (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: far upstream element-binding protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl272,656,752 - 72,668,964 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1272,656,951 - 72,668,854 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,170,003 - 73,181,924 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KHSRP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl272,656,752 - 72,668,964 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1272,656,951 - 72,668,854 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,170,003 - 73,181,924 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KHSRP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38196,413,102 - 6,424,811 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl196,413,102 - 6,424,811 (-)EnsemblGRCh38hg38GRCh38
GRCh37196,413,113 - 6,424,822 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36196,364,115 - 6,375,822 (-)NCBINCBI36Build 36hg18NCBI36
Build 34196,364,358 - 6,375,805NCBI
Celera196,351,903 - 6,363,609 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef196,173,448 - 6,185,628 (-)NCBIHuRef
CHM1_1196,412,720 - 6,424,427 (-)NCBICHM1_1
T2T-CHM13v2.0196,401,987 - 6,413,694 (-)NCBIT2T-CHM13v2.0
Khsrp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391757,328,049 - 57,338,507 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1757,328,051 - 57,338,522 (-)EnsemblGRCm39 Ensembl
GRCm381757,021,049 - 57,031,507 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1757,021,051 - 57,031,522 (-)EnsemblGRCm38mm10GRCm38
MGSCv371757,160,472 - 57,170,930 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,706,180 - 56,716,636 (-)NCBIMGSCv36mm8
Celera1761,368,975 - 61,379,433 (-)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.63NCBI
Khsrp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,949,557 - 1,959,400 (-)NCBIGRCr8
mRatBN7.291,862,555 - 1,872,403 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,862,899 - 1,872,451 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx92,296,303 - 2,306,271 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,645,664 - 7,655,630 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,601,524 - 6,611,490 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,013,795 - 10,023,670 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,013,854 - 10,022,924 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,014,455 - 9,024,320 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,645,132 - 6,654,110 (+)NCBICelera
Cytogenetic Map9q11NCBI
Khsrp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554953,183,179 - 3,193,376 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554953,183,083 - 3,194,356 (+)NCBIChiLan1.0ChiLan1.0
KHSRP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22010,814,051 - 10,825,615 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11910,039,981 - 10,051,460 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0195,433,989 - 5,445,721 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1196,358,159 - 6,371,126 (-)NCBIpanpan1.1PanPan1.1panPan2
KHSRP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12053,746,656 - 53,755,388 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2053,745,742 - 53,756,870 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,492,740 - 53,504,296 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,399,873 - 54,411,441 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,399,824 - 54,410,787 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12053,466,522 - 53,478,067 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,914,951 - 53,926,468 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,144,151 - 54,155,717 (+)NCBIUU_Cfam_GSD_1.0
Khsrp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,060,850 - 214,070,382 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,766,332 - 3,773,872 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,764,401 - 3,774,492 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KHSRP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.166,018,399 - 6,029,807 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl66,018,195 - 6,029,888 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660811,971,916 - 1,983,327 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Khsrp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248283,535,093 - 3,545,978 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248283,535,372 - 3,546,083 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KHSRP
150 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000014785   ⟹   ENSSSCP00000014384
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl272,656,752 - 72,668,964 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000044934   ⟹   ENSSSCP00000045199
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl272,656,752 - 72,668,964 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000055256   ⟹   ENSSSCP00000036543
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl272,656,752 - 72,668,368 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000059186   ⟹   ENSSSCP00000057404
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl272,656,752 - 72,668,964 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000071178   ⟹   ENSSSCP00000067287
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl272,656,752 - 72,668,964 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000086786   ⟹   ENSSSCP00000062380
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl272,656,752 - 72,668,964 (+)Ensembl
RefSeq Acc Id: XM_021083985   ⟹   XP_020939644
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1272,656,951 - 72,668,721 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021083987   ⟹   XP_020939646
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1272,656,951 - 72,668,854 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020939644 (Get FASTA)   NCBI Sequence Viewer  
  XP_020939646 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000014384.4
  ENSSSCP00000036543
  ENSSSCP00000036543.1
  ENSSSCP00000045199.2
  ENSSSCP00000057404
  ENSSSCP00000057404.1
  ENSSSCP00000062380.1
  ENSSSCP00000067287.2
  ENSSSCP00025037282.1
  ENSSSCP00025037427.1
  ENSSSCP00025037610.1
  ENSSSCP00025037769.1
  ENSSSCP00025037901.1
  ENSSSCP00025038064.1
  ENSSSCP00030001494.1
  ENSSSCP00030001528.1
  ENSSSCP00030001557.1
  ENSSSCP00030001562.1
  ENSSSCP00030001584.1
  ENSSSCP00030001592.1
  ENSSSCP00035026074.1
  ENSSSCP00035026079.1
  ENSSSCP00035026089.1
  ENSSSCP00035026095.1
  ENSSSCP00035026102.1
  ENSSSCP00035026106.1
  ENSSSCP00040005937.1
  ENSSSCP00040005964.1
  ENSSSCP00040006003.1
  ENSSSCP00040006059.1
  ENSSSCP00040006118.1
  ENSSSCP00040006133.1
  ENSSSCP00045014239.1
  ENSSSCP00045014310.1
  ENSSSCP00045014373.1
  ENSSSCP00045014390.1
  ENSSSCP00045014419.1
  ENSSSCP00045014455.1
  ENSSSCP00050039873.1
  ENSSSCP00050039907.1
  ENSSSCP00050039909.1
  ENSSSCP00050039914.1
  ENSSSCP00050039922.1
  ENSSSCP00055005666.1
  ENSSSCP00055005699.1
  ENSSSCP00055005723.1
  ENSSSCP00055005729.1
  ENSSSCP00055005737.1
  ENSSSCP00055005754.1
  ENSSSCP00060022076.1
  ENSSSCP00060022083.1
  ENSSSCP00060022085.1
  ENSSSCP00060022087.1
  ENSSSCP00060022092.1
  ENSSSCP00065004829.1
  ENSSSCP00065004838.1
  ENSSSCP00065004849.1
  ENSSSCP00065004852.1
  ENSSSCP00065004853.1
  ENSSSCP00065004856.1
RefSeq Acc Id: XP_020939646   ⟸   XM_021083987
- Peptide Label: isoform X2
- UniProtKB: A0A286ZY30 (UniProtKB/TrEMBL),   A0A8D1VDQ8 (UniProtKB/TrEMBL),   A0A8D1NGM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939644   ⟸   XM_021083985
- Peptide Label: isoform X1
- UniProtKB: A0A287BLB3 (UniProtKB/TrEMBL),   A0A8D2BIY7 (UniProtKB/TrEMBL),   A0A287AMD3 (UniProtKB/TrEMBL),   A0A8D1DFB3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000045199   ⟸   ENSSSCT00000044934
Ensembl Acc Id: ENSSSCP00000057404   ⟸   ENSSSCT00000059186
Ensembl Acc Id: ENSSSCP00000036543   ⟸   ENSSSCT00000055256
Ensembl Acc Id: ENSSSCP00000067287   ⟸   ENSSSCT00000071178
Ensembl Acc Id: ENSSSCP00000014384   ⟸   ENSSSCT00000014785
Ensembl Acc Id: ENSSSCP00000062380   ⟸   ENSSSCT00000086786
Protein Domains
K Homology


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013538 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025062163 UniProtKB/TrEMBL
  ENSSSCG00030002783 UniProtKB/TrEMBL
  ENSSSCG00035048277 UniProtKB/TrEMBL
  ENSSSCG00040011522 UniProtKB/TrEMBL
  ENSSSCG00045012092 UniProtKB/TrEMBL
  ENSSSCG00050067703 UniProtKB/TrEMBL
  ENSSSCG00055003614 UniProtKB/TrEMBL
  ENSSSCG00060038246 UniProtKB/TrEMBL
  ENSSSCG00065008748 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014785.5 UniProtKB/TrEMBL
  ENSSSCT00000044934.3 UniProtKB/TrEMBL
  ENSSSCT00000055256 ENTREZGENE
  ENSSSCT00000055256.3 UniProtKB/TrEMBL
  ENSSSCT00000059186 ENTREZGENE
  ENSSSCT00000059186.3 UniProtKB/TrEMBL
  ENSSSCT00000071178.2 UniProtKB/TrEMBL
  ENSSSCT00000086786.2 UniProtKB/TrEMBL
  ENSSSCT00025085756.1 UniProtKB/TrEMBL
  ENSSSCT00025086049.1 UniProtKB/TrEMBL
  ENSSSCT00025086434.1 UniProtKB/TrEMBL
  ENSSSCT00025086737.1 UniProtKB/TrEMBL
  ENSSSCT00025087031.1 UniProtKB/TrEMBL
  ENSSSCT00025087344.1 UniProtKB/TrEMBL
  ENSSSCT00030003783.1 UniProtKB/TrEMBL
  ENSSSCT00030003867.1 UniProtKB/TrEMBL
  ENSSSCT00030003929.1 UniProtKB/TrEMBL
  ENSSSCT00030003945.1 UniProtKB/TrEMBL
  ENSSSCT00030003996.1 UniProtKB/TrEMBL
  ENSSSCT00030004021.1 UniProtKB/TrEMBL
  ENSSSCT00035064385.1 UniProtKB/TrEMBL
  ENSSSCT00035064404.1 UniProtKB/TrEMBL
  ENSSSCT00035064426.1 UniProtKB/TrEMBL
  ENSSSCT00035064432.1 UniProtKB/TrEMBL
  ENSSSCT00035064443.1 UniProtKB/TrEMBL
  ENSSSCT00035064454.1 UniProtKB/TrEMBL
  ENSSSCT00040015141.1 UniProtKB/TrEMBL
  ENSSSCT00040015228.1 UniProtKB/TrEMBL
  ENSSSCT00040015310.1 UniProtKB/TrEMBL
  ENSSSCT00040015424.1 UniProtKB/TrEMBL
  ENSSSCT00040015552.1 UniProtKB/TrEMBL
  ENSSSCT00040015589.1 UniProtKB/TrEMBL
  ENSSSCT00045020695.1 UniProtKB/TrEMBL
  ENSSSCT00045020788.1 UniProtKB/TrEMBL
  ENSSSCT00045020878.1 UniProtKB/TrEMBL
  ENSSSCT00045020901.1 UniProtKB/TrEMBL
  ENSSSCT00045020943.1 UniProtKB/TrEMBL
  ENSSSCT00045020996.1 UniProtKB/TrEMBL
  ENSSSCT00050092532.1 UniProtKB/TrEMBL
  ENSSSCT00050092587.1 UniProtKB/TrEMBL
  ENSSSCT00050092591.1 UniProtKB/TrEMBL
  ENSSSCT00050092602.1 UniProtKB/TrEMBL
  ENSSSCT00050092619.1 UniProtKB/TrEMBL
  ENSSSCT00055007169.1 UniProtKB/TrEMBL
  ENSSSCT00055007213.1 UniProtKB/TrEMBL
  ENSSSCT00055007244.1 UniProtKB/TrEMBL
  ENSSSCT00055007251.1 UniProtKB/TrEMBL
  ENSSSCT00055007263.1 UniProtKB/TrEMBL
  ENSSSCT00055007284.1 UniProtKB/TrEMBL
  ENSSSCT00060051878.1 UniProtKB/TrEMBL
  ENSSSCT00060051893.1 UniProtKB/TrEMBL
  ENSSSCT00060051896.1 UniProtKB/TrEMBL
  ENSSSCT00060051903.1 UniProtKB/TrEMBL
  ENSSSCT00060051913.1 UniProtKB/TrEMBL
  ENSSSCT00065011780.1 UniProtKB/TrEMBL
  ENSSSCT00065011811.1 UniProtKB/TrEMBL
  ENSSSCT00065011828.1 UniProtKB/TrEMBL
  ENSSSCT00065011831.1 UniProtKB/TrEMBL
  ENSSSCT00065011832.1 UniProtKB/TrEMBL
  ENSSSCT00065011836.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/TrEMBL
  3.30.310.210 UniProtKB/TrEMBL
InterPro FUBP_C UniProtKB/TrEMBL
  KH-I_FUBP2_rpt1 UniProtKB/TrEMBL
  KH-I_FUBP2_rpt2 UniProtKB/TrEMBL
  KH-I_FUBP2_rpt3 UniProtKB/TrEMBL
  KH-I_FUBP2_rpt4 UniProtKB/TrEMBL
  KH_dom UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/TrEMBL
NCBI Gene KHSRP ENTREZGENE
PANTHER FAR UPSTREAM ELEMENT-BINDING PROTEIN 2 UniProtKB/TrEMBL
  KH DOMAIN CONTAINING RNA BINDING PROTEIN UniProtKB/TrEMBL
  P-ELEMENT SOMATIC INHIBITOR, ISOFORM C UniProtKB/TrEMBL
Pfam DUF1897 UniProtKB/TrEMBL
  KH_1 UniProtKB/TrEMBL
PROSITE KH_TYPE_1 UniProtKB/TrEMBL
SMART SM00322 UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/TrEMBL
UniProt A0A286ZY30 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AMD3 ENTREZGENE, UniProtKB/TrEMBL
  A0A287BLB3 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QF76_PIG UniProtKB/TrEMBL
  A0A5G2QQU4_PIG UniProtKB/TrEMBL
  A0A8D0UY00_PIG UniProtKB/TrEMBL
  A0A8D1DFB3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NGH4_PIG UniProtKB/TrEMBL
  A0A8D1NGM3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1VDQ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1XGW6_PIG UniProtKB/TrEMBL
  A0A8D2BIY7 ENTREZGENE, UniProtKB/TrEMBL
  F1SBT6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:89427 ENTREZGENE