EFNA5 (ephrin A5) - Rat Genome Database

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Gene: EFNA5 (ephrin A5) Sus scrofa
Analyze
Symbol: EFNA5
Name: ephrin A5
RGD ID: 13950894
Description: ENCODES a protein that exhibits ephrin receptor binding (ortholog); INVOLVED IN apoptotic process (ortholog); axon guidance (ortholog); cellular response to follicle-stimulating hormone stimulus (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH anencephaly (ortholog); COVID-19 (ortholog); familial adenomatous polyposis 1 (ortholog); FOUND IN GABA-ergic synapse (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ephrin-A5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2112,534,949 - 112,815,827 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12112,533,124 - 112,821,293 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22117,052,889 - 117,095,595 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
EFNA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2112,534,949 - 112,815,827 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12112,533,124 - 112,821,293 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22117,052,889 - 117,095,595 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EFNA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385107,376,894 - 107,670,937 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5107,376,894 - 107,670,937 (-)EnsemblGRCh38hg38GRCh38
GRCh375106,712,595 - 107,006,638 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365106,744,250 - 107,034,495 (-)NCBINCBI36Build 36hg18NCBI36
Build 345106,744,249 - 107,034,495NCBI
Celera5102,652,515 - 102,946,033 (-)NCBICelera
Cytogenetic Map5q21.3NCBI
HuRef5101,885,499 - 102,179,416 (-)NCBIHuRef
CHM1_15106,145,383 - 106,439,350 (-)NCBICHM1_1
T2T-CHM13v2.05107,879,857 - 108,173,778 (-)NCBIT2T-CHM13v2.0
Efna5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391762,909,949 - 63,188,431 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1762,911,179 - 63,188,312 (-)EnsemblGRCm39 Ensembl
GRCm381762,602,957 - 62,881,317 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1762,604,184 - 62,881,317 (-)EnsemblGRCm38mm10GRCm38
MGSCv371762,952,306 - 63,230,666 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361762,290,210 - 62,566,779 (-)NCBIMGSCv36mm8
Celera1766,941,186 - 67,218,870 (-)NCBICelera
Cytogenetic Map17E1.1NCBI
cM Map1732.57NCBI
Efna5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89109,763,786 - 110,042,396 (-)NCBIGRCr8
mRatBN7.29102,316,753 - 102,595,480 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9102,320,295 - 102,597,413 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9110,731,253 - 111,005,043 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09115,846,837 - 116,120,820 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09114,197,132 - 114,470,919 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09110,054,002 - 110,329,878 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9110,057,155 - 110,225,486 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09109,624,143 - 109,898,215 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49101,227,615 - 101,532,696 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19101,437,094 - 101,742,176 (-)NCBI
Celera999,743,743 - 100,016,279 (-)NCBICelera
Cytogenetic Map9q37NCBI
Efna5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554186,920,919 - 7,185,478 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554186,919,270 - 7,188,561 (+)NCBIChiLan1.0ChiLan1.0
EFNA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24102,656,917 - 102,958,630 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15100,810,566 - 101,112,275 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05102,732,268 - 103,026,746 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15108,548,927 - 108,842,729 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5108,548,927 - 108,598,942 (-)Ensemblpanpan1.1panPan2
EFNA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.134,272,138 - 4,546,527 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl34,272,518 - 4,542,049 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha35,666,868 - 5,947,210 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.034,163,164 - 4,443,229 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl34,169,390 - 4,439,740 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.134,102,672 - 4,382,928 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.034,131,173 - 4,411,046 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.034,274,587 - 4,554,692 (+)NCBIUU_Cfam_GSD_1.0
Efna5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213159,344,414 - 159,394,038 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365312,217,368 - 2,300,794 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365312,217,467 - 2,267,265 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFNA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12310,823,243 - 11,115,175 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2310,823,261 - 10,873,666 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660363,139,584 - 3,432,471 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Efna5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474325,341,132 - 25,611,564 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474325,336,851 - 25,611,698 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in EFNA5
5582 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 2
Low 10 4 2 5 2 22 2 1 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000054006   ⟹   ENSSSCP00000043409
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2112,534,950 - 112,815,827 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000064949   ⟹   ENSSSCP00000034604
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2112,534,949 - 112,815,827 (-)Ensembl
RefSeq Acc Id: XM_021084601   ⟹   XP_020940260
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12112,533,124 - 112,817,511 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084602   ⟹   XP_020940261
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12112,533,124 - 112,815,448 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084603   ⟹   XP_020940262
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12112,533,124 - 112,821,293 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020940262   ⟸   XM_021084603
- Peptide Label: isoform X3
- UniProtKB: A0A8D1EAL5 (UniProtKB/TrEMBL),   A0A287AHP3 (UniProtKB/TrEMBL),   A0A8D0SI60 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020940260   ⟸   XM_021084601
- Peptide Label: isoform X1
- UniProtKB: A0A286ZSZ9 (UniProtKB/TrEMBL),   A0A4X1TWM0 (UniProtKB/TrEMBL),   A0A4X1TTF7 (UniProtKB/TrEMBL),   A0A8D1E6Q6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020940261   ⟸   XM_021084602
- Peptide Label: isoform X2
- UniProtKB: A0A4X1TTF7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000034604   ⟸   ENSSSCT00000064949
RefSeq Acc Id: ENSSSCP00000043409   ⟸   ENSSSCT00000054006
Protein Domains
Ephrin RBD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036520 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005026954 UniProtKB/TrEMBL
  ENSSSCG00015039818 UniProtKB/TrEMBL
  ENSSSCG00025054291 UniProtKB/TrEMBL
  ENSSSCG00030040148 UniProtKB/TrEMBL
  ENSSSCG00035043006 UniProtKB/TrEMBL
  ENSSSCG00040032069 UniProtKB/TrEMBL
  ENSSSCG00045003298 UniProtKB/TrEMBL
  ENSSSCG00050073223 UniProtKB/TrEMBL
  ENSSSCG00055015334 UniProtKB/TrEMBL
  ENSSSCG00060041200 UniProtKB/TrEMBL
  ENSSSCG00065022242 UniProtKB/TrEMBL
  ENSSSCG00070012160 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000054006 ENTREZGENE
  ENSSSCT00000054006.3 UniProtKB/TrEMBL
  ENSSSCT00000064949 ENTREZGENE
  ENSSSCT00000064949.3 UniProtKB/TrEMBL
  ENSSSCT00005042762.1 UniProtKB/TrEMBL
  ENSSSCT00005042776.1 UniProtKB/TrEMBL
  ENSSSCT00015053274.1 UniProtKB/TrEMBL
  ENSSSCT00015053333.1 UniProtKB/TrEMBL
  ENSSSCT00025074428.1 UniProtKB/TrEMBL
  ENSSSCT00025074487.1 UniProtKB/TrEMBL
  ENSSSCT00030055867.1 UniProtKB/TrEMBL
  ENSSSCT00030055881.1 UniProtKB/TrEMBL
  ENSSSCT00030055904.1 UniProtKB/TrEMBL
  ENSSSCT00035057144.1 UniProtKB/TrEMBL
  ENSSSCT00035057148.1 UniProtKB/TrEMBL
  ENSSSCT00035057151.1 UniProtKB/TrEMBL
  ENSSSCT00040043220.1 UniProtKB/TrEMBL
  ENSSSCT00040043273.1 UniProtKB/TrEMBL
  ENSSSCT00045005381.1 UniProtKB/TrEMBL
  ENSSSCT00045005394.1 UniProtKB/TrEMBL
  ENSSSCT00045005402.1 UniProtKB/TrEMBL
  ENSSSCT00050100049.1 UniProtKB/TrEMBL
  ENSSSCT00055030375.1 UniProtKB/TrEMBL
  ENSSSCT00055030408.1 UniProtKB/TrEMBL
  ENSSSCT00060055846.1 UniProtKB/TrEMBL
  ENSSSCT00065029592.1 UniProtKB/TrEMBL
  ENSSSCT00065029595.1 UniProtKB/TrEMBL
  ENSSSCT00070023783.1 UniProtKB/TrEMBL
  ENSSSCT00070023790.1 UniProtKB/TrEMBL
  ENSSSCT00070023797.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.420 UniProtKB/TrEMBL
InterPro Cupredoxin UniProtKB/TrEMBL
  Ephrin UniProtKB/TrEMBL
  Ephrin-A_Ecto UniProtKB/TrEMBL
  Ephrin_CS UniProtKB/TrEMBL
  Ephrin_RBD UniProtKB/TrEMBL
NCBI Gene EFNA5 ENTREZGENE
PANTHER EPHRIN-A5 UniProtKB/TrEMBL
  PTHR11304 UniProtKB/TrEMBL
Pfam Ephrin UniProtKB/TrEMBL
PRINTS EPHRIN UniProtKB/TrEMBL
PROSITE EPHRIN_RBD_1 UniProtKB/TrEMBL
  EPHRIN_RBD_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF49503 UniProtKB/TrEMBL
UniProt A0A286ZSZ9 ENTREZGENE
  A0A287AHP3 ENTREZGENE
  A0A4X1TTF7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TWL5_PIG UniProtKB/TrEMBL
  A0A4X1TWM0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0SI60 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1E6Q6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1EAL5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A286ZSZ9 UniProtKB/TrEMBL
  A0A287AHP3 UniProtKB/TrEMBL
VGNC ID VGNC:87575 ENTREZGENE