PPP1R16A (protein phosphatase 1 regulatory subunit 16A) - Rat Genome Database

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Gene: PPP1R16A (protein phosphatase 1 regulatory subunit 16A) Sus scrofa
Analyze
Symbol: PPP1R16A (Ensembl: GPT)
Name: protein phosphatase 1 regulatory subunit 16A (Ensembl:glutamic--pyruvic transaminase)
RGD ID: 13950626
Description: ENCODES a protein that exhibits enzyme inhibitor activity (inferred); L-alanine:2-oxoglutarate aminotransferase activity (inferred); myosin phosphatase regulator activity (inferred); INVOLVED IN biosynthetic process (inferred); L-alanine catabolic process (inferred); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; alanine metabolic pathway; argininosuccinic aciduria pathway; ASSOCIATED WITH Acute Liver Failure (ortholog); Baller-Gerold syndrome (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN cytoplasm (inferred); INTERACTS WITH bisphenol A; deoxynivalenol; L-cysteine
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4297,748 - 320,056 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14302,621 - 320,048 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24393,621 - 411,067 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PPP1R16A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4297,748 - 320,056 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14302,621 - 320,048 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24393,621 - 411,067 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388144,503,068 - 144,507,172 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8144,502,973 - 144,507,174 (+)EnsemblGRCh38hg38GRCh38
GRCh378145,728,451 - 145,732,555 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368145,700,231 - 145,703,357 (+)NCBINCBI36Build 36hg18NCBI36
Build 348145,700,232 - 145,703,357NCBI
Celera8141,904,937 - 141,908,027 (+)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8140,842,619 - 140,845,709 (+)NCBIHuRef
CHM1_18145,767,740 - 145,770,746 (+)NCBICHM1_1
T2T-CHM13v2.08145,672,833 - 145,676,937 (+)NCBIT2T-CHM13v2.0
Ppp1r16a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,555,843 - 76,579,119 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,555,815 - 76,579,119 (+)EnsemblGRCm39 Ensembl
GRCm381576,671,643 - 76,694,919 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,671,615 - 76,694,919 (+)EnsemblGRCm38mm10GRCm38
MGSCv371576,502,110 - 76,525,345 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,498,935 - 76,522,170 (+)NCBIMGSCv36mm8
Celera1578,165,292 - 78,188,525 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.25NCBI
Ppp1r16a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87110,272,307 - 110,295,452 (+)NCBIGRCr8
mRatBN7.27108,391,664 - 108,414,812 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7108,391,656 - 108,419,509 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7110,133,497 - 110,156,735 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07112,357,073 - 112,380,309 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07112,317,909 - 112,341,058 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07117,734,002 - 117,757,249 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,734,002 - 117,757,249 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07117,722,085 - 117,745,228 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,721,078 - 114,744,220 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17114,774,380 - 114,778,451 (+)NCBI
Celera7104,741,567 - 104,764,704 (+)NCBICelera
Cytogenetic Map7q34NCBI
Ppp1r16a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554543,119,774 - 3,128,774 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554543,097,218 - 3,127,896 (+)NCBIChiLan1.0ChiLan1.0
GPT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27161,994,411 - 161,999,064 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18137,522,660 - 137,528,193 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl8144,259,991 - 144,263,737 (+)Ensemblpanpan1.1panPan2
PPP1R16A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,887,415 - 37,922,710 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,914,076 - 37,922,751 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1337,848,198 - 37,883,544 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01338,361,177 - 38,396,538 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11338,052,922 - 38,088,496 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01338,161,555 - 38,196,898 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01338,638,011 - 38,673,359 (+)NCBIUU_Cfam_GSD_1.0
Ppp1r16a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303344,528 - 361,883 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364707,770,776 - 7,788,006 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364707,770,627 - 7,788,039 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1R16A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18138,689,414 - 138,716,707 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8138,689,414 - 138,716,488 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660391,138,239 - 1,167,241 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp1r16a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473512,360,108 - 12,368,093 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473512,360,108 - 12,384,663 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PPP1R16A
273 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003125441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005662803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005662804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005662805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013996396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021090480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021090481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021090482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021090483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021090484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021090486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021090487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021090488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021090489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021090490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021090492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK346040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU468594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01100443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSSCT00000041562   ⟹   ENSSSCP00000058866
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4301,785 - 307,654 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000045184   ⟹   ENSSSCP00000057639
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4297,751 - 320,039 (-)Ensembl
RefSeq Acc Id: XM_003125441   ⟹   XP_003125489
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14302,621 - 320,046 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005662803   ⟹   XP_005662860
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14302,621 - 320,048 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005662804   ⟹   XP_005662861
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14302,621 - 319,930 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005662805   ⟹   XP_005662862
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14302,621 - 320,046 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013996396   ⟹   XP_013851850
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14302,621 - 319,930 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090480   ⟹   XP_020946139
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14302,621 - 320,047 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090481   ⟹   XP_020946140
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14302,621 - 320,048 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090482   ⟹   XP_020946141
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14302,621 - 319,930 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090483   ⟹   XP_020946142
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14302,621 - 320,048 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090484   ⟹   XP_020946143
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14302,621 - 320,048 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090486   ⟹   XP_020946145
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14302,621 - 320,048 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090487   ⟹   XP_020946146
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14302,621 - 320,048 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090488   ⟹   XP_020946147
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14302,621 - 319,930 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090489   ⟹   XP_020946148
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14302,621 - 319,930 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090490   ⟹   XP_020946149
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14302,621 - 319,930 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090492   ⟹   XP_020946151
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14302,621 - 320,048 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020946146   ⟸   XM_021090487
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020946145   ⟸   XM_021090486
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020946143   ⟸   XM_021090484
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005662860   ⟸   XM_005662803
- Peptide Label: isoform X3
- UniProtKB: F1RSP4 (UniProtKB/TrEMBL),   A0A4X1UN70 (UniProtKB/TrEMBL),   A0A287BQS6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946140   ⟸   XM_021090481
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020946151   ⟸   XM_021090492
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020946142   ⟸   XM_021090483
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020946139   ⟸   XM_021090480
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_003125489   ⟸   XM_003125441
- Peptide Label: isoform X3
- UniProtKB: F1RSP4 (UniProtKB/TrEMBL),   A0A4X1UN70 (UniProtKB/TrEMBL),   A0A287BQS6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005662862   ⟸   XM_005662805
- Peptide Label: isoform X3
- UniProtKB: F1RSP4 (UniProtKB/TrEMBL),   A0A4X1UN70 (UniProtKB/TrEMBL),   A0A287BQS6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013851850   ⟸   XM_013996396
- Peptide Label: isoform X3
- UniProtKB: F1RSP4 (UniProtKB/TrEMBL),   A0A4X1UN70 (UniProtKB/TrEMBL),   A0A287BQS6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946147   ⟸   XM_021090488
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020946149   ⟸   XM_021090490
- Peptide Label: isoform X3
- UniProtKB: A0A4X1UN70 (UniProtKB/TrEMBL),   A0A287BQS6 (UniProtKB/TrEMBL),   F1RSP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946148   ⟸   XM_021090489
- Peptide Label: isoform X3
- UniProtKB: A0A4X1UN70 (UniProtKB/TrEMBL),   A0A287BQS6 (UniProtKB/TrEMBL),   F1RSP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005662861   ⟸   XM_005662804
- Peptide Label: isoform X3
- UniProtKB: F1RSP4 (UniProtKB/TrEMBL),   A0A4X1UN70 (UniProtKB/TrEMBL),   A0A287BQS6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020946141   ⟸   XM_021090482
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000058866   ⟸   ENSSSCT00000041562
RefSeq Acc Id: ENSSSCP00000057639   ⟸   ENSSSCT00000045184

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005901 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070018633 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000041562 ENTREZGENE
  ENSSSCT00000041562.3 UniProtKB/TrEMBL
  ENSSSCT00000045184.3 UniProtKB/TrEMBL
  ENSSSCT00070036759.1 UniProtKB/TrEMBL
  ENSSSCT00070036769.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1970 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
  3.40.640.10 UniProtKB/TrEMBL
  3.90.1150.10 UniProtKB/TrEMBL
InterPro ALAT1/2-like UniProtKB/TrEMBL
  Aminotransferase_I/II UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_dom1 UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
KEGG Report ssc:100524800 UniProtKB/TrEMBL
NCBI Gene PPP1R16A ENTREZGENE
PANTHER ALANINE AMINOTRANSFERASE 1 UniProtKB/TrEMBL
  PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 UniProtKB/TrEMBL
  PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 16A UniProtKB/TrEMBL
  PTHR11751 UniProtKB/TrEMBL
Pfam Aminotran_1_2 UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
  SSF53383 UniProtKB/TrEMBL
UniProt A0A287BMB4_PIG UniProtKB/TrEMBL
  A0A287BQS6 ENTREZGENE
  A0A4X1UN70 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UR72_PIG UniProtKB/TrEMBL
  F1RSP4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287BQS6 UniProtKB/TrEMBL