ZXDC (ZXD family zinc finger C) - Rat Genome Database

Name: ZXDC
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: ZXDC (ZXD family zinc finger C) Sus scrofa

Analyze

Symbol:

ZXDC

Name:

ZXD family zinc finger C

RGD ID:

13950093

Description:

ENCODES a protein that exhibits C2H2 zinc finger domain binding (inferred); LRR domain binding (inferred); metal ion binding (inferred); INVOLVED IN positive regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH alkaptonuria (ortholog); genetic disease (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN nucleus (inferred); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

zinc finger protein ZXDC

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZXDC (ZXD family zinc finger C)	HGNC	Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Zxdc (ZXD family zinc finger C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Zxdc (ZXD family zinc finger C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Zxdc (ZXD family zinc finger C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZXDC (ZXD family zinc finger C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZXDC (ZXD family zinc finger C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zxdc (ZXD family zinc finger C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZXDC (ZXD family zinc finger C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zxdc (ZXD family zinc finger C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	53,640,266 - 53,672,579 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	53,640,335 - 53,672,580 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	58,671,554 - 58,703,786 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alkaptonuria (ISO)

genetic disease (ISO)

Primary Lymphedema with Myelodysplasia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA,IEA)

Cellular Component

nucleus (IBA,IEA)

Molecular Function

C2H2 zinc finger domain binding (IEA)

LRR domain binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

transcription coactivator activity (IEA)

transcription coregulator activity (IBA,IEA)

References

Additional References at PubMed

PMID:12226715	PMID:14681463	PMID:17145712	PMID:17407547	PMID:30032202

Genomics

Comparative Map Data

ZXDC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	53,640,266 - 53,672,579 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	53,640,335 - 53,672,580 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	58,671,554 - 58,703,786 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZXDC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	126,437,601 - 126,475,891 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	126,437,601 - 126,475,891 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	126,156,444 - 126,194,734 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	127,639,134 - 127,677,452 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	124,581,266 - 124,619,586 (-)	NCBI		Celera
Cytogenetic Map	3	q21.3	NCBI
HuRef	3	123,536,914 - 123,575,005 (-)	NCBI		HuRef
CHM1_1	3	126,119,477 - 126,157,788 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	129,170,156 - 129,208,446 (-)	NCBI		T2T-CHM13v2.0

Zxdc
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	90,346,460 - 90,380,472 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	90,346,474 - 90,380,472 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	90,369,478 - 90,403,490 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	90,369,492 - 90,403,490 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	90,319,488 - 90,353,480 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	90,334,982 - 90,368,990 (+)	NCBI		MGSCv36	mm8
Celera	6	92,263,246 - 92,297,382 (+)	NCBI		Celera
Cytogenetic Map	6	D1	NCBI
cM Map	6	40.16	NCBI

Zxdc
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	124,439,560 - 124,471,694 (+)	NCBI		GRCr8
mRatBN7.2	4	122,882,389 - 122,914,486 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	122,882,336 - 122,916,496 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	4	122,282,119 - 122,314,251 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	122,282,279 - 122,312,879 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	186,823,155 - 186,855,265 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	124,629,459 - 124,660,467 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	111,806,376 - 111,838,676 (+)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

Zxdc
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955421	21,687,614 - 21,724,657 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955421	21,686,119 - 21,724,948 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZXDC
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	124,367,184 - 124,405,551 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	124,371,964 - 124,410,332 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	123,486,239 - 123,524,826 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	130,802,891 - 130,840,674 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

ZXDC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	619,806 - 664,089 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	621,331 - 651,488 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	653,995 - 698,750 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	631,339 - 676,098 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	631,341 - 676,282 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	359,284 - 404,039 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	687,998 - 732,599 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	647,116 - 691,865 (-)	NCBI		UU_Cfam_GSD_1.0

Zxdc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404942	19,109,249 - 19,134,501 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936898	553,680 - 581,750 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZXDC
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	54,542,004 - 54,580,646 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	54,542,167 - 54,579,883 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	111,715,479 - 111,753,252 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zxdc
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624773	111,050 - 148,196 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624773	110,812 - 149,806 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in ZXDC
717 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium				1	1
Low	10	4	3	4	1	23	2	3	3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001244222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013996783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK237350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK347084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK349233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK351242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BI339313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CN155436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CT868688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EW077240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01026994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000039116 ⟹ ENSSSCP00000038488

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	53,640,123 - 53,672,579 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000057328 ⟹ ENSSSCP00000045577

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	7	53,640,266 - 53,672,579 (+)	Ensembl

RefSeq Acc Id:

NM_001244222 ⟹ NP_001231151

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	53,640,396 - 53,672,580 (+)	NCBI

Sequence:

show sequence

ATGGACGTGCCGGCGGTGCTCGCCCCCCCGGCTCCGGCCCCGGCCCAGCGCGGACCCCAGCTCG
GGGGCGGCCCCGGTCGGACCCGCAGAGCTCCGGGCCCTGCGCGCCGCCGTCTCCTGCTGCTGCG
GAGCCCCGAGGACGACGCGCAGGGGCAGCAGTGCGGAGAGGCCCGGCCAGCGGGCCCCGGCGGC
GGCGGCGGCGGCGGCGGAGGCGACTCCTTCGTGGTGCTGCTGGAAGTGGCGCGCGGCGCGGCCG
AGGCCCCGGGGCGGCTGGAGCCCGAGCCCGAGCCCAGCGTCGCCGCGAGCCCGGCCGGGCGCCC
AGCGCAGGCCCTCGGCGGCGAAGCCCTTGTTTCCCCTACCGGCGCGCCTCTCGCGAGCCCCGGG
GCCGCCGGCGGCCAGGACCTGGTGGTGCGCTTAGAGCGCGGCGTCCTCGCGCTTGCTGCACCGC
CCCGGGGTTCTCCGCCGGACCGGGAGGCCGCCTGTCCGGCCGAGGCCCGCCGCGCGCCCGCCGG
TCCCGGCTACCGCTGCCCGGAGCCACAGTGCGCTCTCCTCTTCGCCAAGAAGCACCAGCTCAAG
GTGCACCTGCTGACGCACAGCGGCGGCCAGGGCCGGCGGCCCTTCAAGTGCCCGCTGGACGGCT
GCGGCTGGGCCTTCACCACGTCCTACAAGCTCAAGCGGCACCTGCAGTCGCACGACAAGCTGCG
GCCCTTTGGCTGCCCGGTGGGCGGCTGCGGCAAGAAGTTCACCACCGTATACAACCTCAAGGCG
CACATGAAGGGCCACGAGCAGGAGAGCCTGTTCAAGTGCGAGGTGTGCGCCGAGCGCTTCCCCA
CGCATGCCAAGCTCAGCTCGCACCAGCGCAGCCACTTCGAGCCCGAGCGGCCCTACAAGTGCGA
CTATCCCGGCTGTGAGAAGACGTTCATCACAGTGAGTGCTCTCTTCTCCCACAACCGGGCCCAC
TTCAGGGAGCAGGAACTCTTCTCTTGCTCCTTCCCTGGTTGCAGTAAGCAGTATGACAAAGCCT
GTCGCCTGAAAATCCACCTGAGAAGCCATACGGGCGAAAGACCTTTTATCTGTGACTCTGACAG
CTGTGGCTGGACCTTCACCAGCATGTCAAAACTCCTACGGCACAAAAGGAAACACGAGGATGAC
CGGAGGTTTGCCTGCCCTGTGGAGGGCTGTGGGAAGTCGTTTACGAGGGCAGAGCACCTGAAGG
GCCACAGCGTCACCCACCTGGGCACAAAGCCCTTTGTGTGTCCTGTAGAAGGGTGCTGTGCCCG
GTTCTCTGCGAGGAGCAGCCTCTACATTCACTCCAAGAAGCACCTGCAGGACGTGGCCCCAAAG
AGCAGGTGCCCAGCCTCCAGCTGTGACAGGCTCTTTGCCTCCAAGCACAACGGGAAGGCGCACG
TGGGCAGGCAGCCCCGCCGGCACCCAGACCTCTTCCCTCCGCTAGGAGCTCCGAGTGCCCTTAC
GCCCAGCAGTGACCTCAGTGGCCCAGGCCAGAGCGAGTTCAGCAACGTGGACCTGGCACTCCTC
TTCTCCGACACGCCTGGTGACAATAGCGGTGCCGCTGGGGCCTCTGACGAGGCGCTAAGCGCTG
GGATCCTGACGATTGATGTGACTTCCATGAGCTCCTCTCTGGGAGGGGACCTGCCCACTAGTCA
CACTTCCTTAGGGCCCATGGACCCGCTGGTCTTGGTGGCCCACAGTGACGTGCCTCCAGGCCCA
GACAGCCCCCTCGTCCTTGGGACAGCGGCCACGGTCCTCCAGCAGCGCAGCTTCGCCATGGACG
ATACGCAAGGTGTAGGCGCAGGAGCGCTGGGCTGCTTGGTGGCTGTGCCTGTGAAGAGCTTGAG
CCTGGACCCACCGGCTTTGACCTCCGGCAGCAGTTCGGCAGCGAACACCTGCATGCCAGCCTCT
GCCAGCAGCACTCAGGGAAACACCAGTGTCCCAGAGCTGCTGGTTCCCATCAAAGTGGAAGCAG
ACTCGCCTCCTGGCCCCGACACCATCAGGCAGCAGGAGCGAAGCAGAGGGGCGCCTCGGCCTGT
GCTGTCCAGCCCCGCAGAGGAGCACGGGCCCCAGACAGACGCGGGGCTTGGTGCGGGGACCAGC
GGCCTCTCCCTGGAAGGTGGGGGCTCAGCAAGAACTGATTCCCGAGCCATTCAACTGGCCAAGA
AAATAAAGCAGAAAGGAGCTGGGAGCAGCGCAGGAGCTACGGGGCCAGCTCAGACCCGAGGGAA
AGATGATGACCCGGGCAGCCCCACTTGTGTGCCTGCCAGCCCGAGTGGCTGGGTGTGGGGCAGC
CTCGTGGTGCCCAGCGTCCAGGTCCAGCTGCTGCAGGACGACCCTGCGGGTGAAGCAGGCCTGC
CGCTGGCGCTCAGCCCCCAGCCCTCTGCCTTCCGCCCCCTGCTCGCCATCGATTTTCCCGTCTA
CGTCCTCCAGGAGGTGCTTCCTGCAGCTGGAGGGGCTGCCGGGCCTGAGGACACGCAGCGCTCG
GGGAGCACGGCCAGCCTGCGCGACCCGCAGTGAGAGCAGCCCTGCCTGGGCCGAGGGCGCCACT
CAGACGCCAGCCTCATTCTTTGGGACTTTGGGGTTCATTTGTCAGAATTGTTTTTCTTATGTTG
TATCAGAAACCAGTTTGGGGCTGTACTACCTGAAACTGCCTGTGTGAGCAGATGCTCGGGTCAG
GCAAGGATGCTCTGTGCAAAGCGTGCCTCTCCTGAGCGGCCATGTGCGTGGCCCTCATCTGGCC
CTGCCGAGCCCGAACAGCTGCAGGCCCCTGGCCAGATGGCTCAGCTGCAGTGAAAGCTCATGGG
TCTTAAGCTTCAGGGTCAGGGTCTGGCTGAGAGCACCCCCCCCCCCCCCCGTGGAGGTCAAGGT
CAGGCAGGGGGCCCATTGTCAAGGAAGCTAAATTCTAGCCCGTGTCTGGCAGACCAGGCAGCAG
TGGTGTCAGAGGCACTGGACGGGTGAAACAGCCCCCAGTTCTGTCAGAGCCCCCTGCATAGATT
GAATTTTGACTCATAACTTTTAAAAAGATATTTCTAAATCTTGTATTTGGGTGTTAGCAGTTAG
TGGTAATTGGATAGTGGTTTGCAAGGCCACATTCTGAGAGCATAAAGCTCGTGTGGGGCTGTGA
TGGGGCTGCTTTTGTAGGTGTGCACACGTGGTGCCCGGTGTTGTAGAGTGGTGTCTCTGGTAAA
AGGAGACCAGACCCAAACTTGCAAATGTTTATTTGTTCATTCACGGACTGCACACAGGGTCTCT
CAGAAATGGTTTTTTTGCCTGGGGTCTTTAGAAGTATTTATTCGAGTTGCTGTTTGATTCTCAG
ACTTGAAGTCATCCAAACTCTTGTCAGTTTGTATCTTGAGTTTTTATAGTGACTCCAGCTTTCT
AGCGTGATCTCTCCATCCTGGGCAGGGTGGGGGGTGTCCCCATTTCTAGAGGGTTCTTAACCAC
AAAACTCTGTGCTATGTCAAGGCAGTTCTGTGCTGTCCAGTGGCCATGCCACACTGTCCCCCTC
CAGGCTGTGTGGTGGCCCTTCATCTTCATGCCTCAGTTAGTGTCCACCTGAAGTGCTCAGAATT
GACTAATCTCCTAGGTTCGGAGCCCCTGCTGACCTTGGGCCCGACACCAGCGCACATGAATAAA
GGTTCTGTACAGCCAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_013996783 ⟹ XP_013852237

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	53,640,335 - 53,672,580 (+)	NCBI

Sequence:

show sequence

AGGGCGTGAGGGTGGGGCGGGGCTTCCGGTGAGGCGGTGGCTGGACGCGCTGTGGCCCAAGATG
GACGTGCCGGCGGTGCTCGCCCCCCCGGCTCCGGCCCCGGCCCAGCGCGGACCCCAGCTCGGGG
GCGGCCCCGGTCGGACCCGCAGAGCTCCGGGCCCTGCGCGCCGCCGTCTCCTGCTGCTGCGGAG
CCCCGAGGACGACGCGCAGGGGCAGCAGTGCGGAGAGGCCCGGCCAGCGGGCCCCGGCGGCGGC
GGCGGCGGCGGCGGAGGCGACTCCTTCGTGGTGCTGCTGGAAGTGGCGCGCGGCGCGGCCGAGG
CCCCGGGGCGGCTGGAGCCCGAGCCCGAGCCCAGCGTCGCCGCGAGCCCGGCCGGGCGCCCAGC
GCAGGCCCTCGGCGGCGAAGCCCTTGTTTCCCCTACCGGCGCGCCTCTCGCGAGCCCCGGGGCC
GCCGGCGGCCAGGACCTGGTGGTGCGCTTAGAGCGCGGCGTCCTCGCGCTTGCTGCACCGCCCC
GGGGTTCTCCGCCGGACCGGGAGGCCGCCTGTCCGGCCGAGGCCCGCCGCGCGCCCGCCGGTCC
CGGCTACCGCTGCCCGGAGCCACAGTGCGCTCTCCTCTTCGCCAAGAAGCACCAGCTCAAGGTG
CACCTGCTGACGCACAGCGGCGGCCAGGGCCGGCGGCCCTTCAAGTGCCCGCTGGACGGCTGCG
GCTGGGCCTTCACCACGTCCTACAAGCTCAAGCGGCACCTGCAGTCGCACGACAAGCTGCGGCC
CTTTGGCTGCCCGGTGGGCGGCTGCGGCAAGAAGTTCACCACCGTATACAACCTCAAGGCGCAC
ATGAAGGGCCACGAGCAGGAGAGCCTGTTCAAGTGCGAGGTGTGCGCCGAGCGCTTCCCCACGC
ATGCCAAGCTCAGCTCGCACCAGCGCAGCCACTTCGAGCCCGAGCGGCCCTACAAGTGCGACTA
TCCCGGCTGTGAGAAGACGTTCATCACAGTGAGTGCTCTCTTCTCCCACAACCGGGCCCACTTC
AGGGAGCAGGAACTCTTCTCTTGCTCCTTCCCTGGTTGCAGTAAGCAGTATGACAAAGCCTGTC
GCCTGAAAATCCACCTGAGAAGCCATACGGGCGAAAGACCTTTTATCTGTGACTCTGACAGCTG
TGGCTGGACCTTCACCAGCATGTCAAAACTCCTACGGCACAAAAGGAAACACGAGGATGACCGG
AGGTTTGCCTGCCCTGTGGAGGGCTGTGGGAAGTCGTTTACGAGGGCAGAGCACCTGAAGGGCC
ACAGCGTCACCCACCTGGGCACAAAGCCCTTTGTGTGTCCTGTAGAAGGGTGCTGTGCCCGGTT
CTCTGCGAGGAGCAGCCTCTACATTCACTCCAAGAAGCACCTGCAGGACGTGGCCCCAAAGAGC
AGGTGCCCAGCCTCCAGCTGTGACAGGCTCTTTGCCTCCAAGCACAACGGGAAGGCGCACGTGG
GCAGGCAGCCCCGCCGGCACCCAGACCTCTTCCCTCCGCTAGGAGCTCCGAGTGCCCTTACGCC
CAGCAGTGACCTCAGTGGCCCAGGCCAGAGCGAGTTCAGCAACGTGGACCTGGCACTCCTCTTC
TCCGACACGCCTGGTGACAATAGCGGTGCCGCTGGGGCCTCTGACGAGGCGCTAAGCGCTGGGA
TCCTGACGATTGATGTGACTTCCATGAGCTCCTCTCTGGGAGGGGACCTGCCCACTAGTCACAC
TTCCTTAGGGCCCATGGACCCGCTGGTCTTGGTGGCCCACAGTGACGTGCCTCCAGGCCCAGAC
AGCCCCCTCGTCCTTGGGACAGCGGCCACGGTCCTCCAGCAGCGCAGCTTCGCCATGGACGATA
CGCAAGGTGTAGGCGCAGGAGCGCTGGGCTGCTTGGTGGCTGTGCCTGTGAAGAGCTTGAGCCT
GGACCCACCGGCTTTGACCTCCGGCAGCAGTTCGGCAGCGAACACCTGCATGCCAGCCTCTGCC
AGCAGCACTCAGGGAAACACCAGTGTCCCAGAGCTGCTGGTTCCCATCAAAGTGGAAGCAGACT
CGCCTCCTGGCCCCGACACCATCAGGCAGCAGGAGCGAAGCAGAGGGGCGCCTCGGCCTGTGCT
GTCCAGCCCCGCAGAGGAGCACGGGCCCCAGACAGACGCGGGGCTTGGTGCGGGGACCAGCGGC
CTCTCCCTGGAAGGTGGGGGCTCAGCAAGAACTGATTCCCGAGCCATTCAACTGGCCAAGAAAA
TAAAGCAGAAAGGAGCTGGGAGCAGCGCAGGAGGTGCTTCCTGCAGCTGGAGGGGCTGCCGGGC
CTGAGGACACGCAGCGCTCGGGGAGCACGGCCAGCCTGCGCGACCCGCAGTGAGAGCAGCCCTG
CCTGGGCCGAGGGCGCCACTCAGACGCCAGCCTCATTCTTTGGGACTTTGGGGTTCATTTGTCA
GAATTGTTTTTCTTATGTTGTATCAGAAACCAGTTTGGGGCTGTACTACCTGAAACTGCCTGTG
TGAGCAGATGCTCGGGTCAGGCAAGGATGCTCTGTGCAAAGCGTGCCTCTCCTGAGCGGCCATG
TGCGTGGCCCTCATCTGGCCCTGCCGAGCCCGAACAGCTGCAGGCCCCTGGCCAGATGGCTCAG
CTGCAGTGAAAGCTCATGGGTCTTAAGCTTCAGGGTCAGGGTCTGGCTGAGAGCACCCCCCCCC
CCCCCGTGGAGGTCAAGGTCAGGCAGGGGGCCCATTGTCAAGGAAGCTAAATTCTAGCCCGTGT
CTGGCAGACCAGGCAGCAGTGGTGTCAGAGGCACTGGACGGGTGAAACAGCCCCCAGTTCTGTC
AGAGCCCCCTGCATAGATTGAATTTTGACTCATAACTTTTAAAAAGATATTTCTAAATCTTGTA
TTTGGGTGTTAGCAGTTAGTGGTAATTGGATAGTGGTTTGCAAGGCCACATTCTGAGAGCATAA
AGCTCGTGTGGGGCTGTGATGGGGCTGCTTTTGTAGGTGTGCACACGTGGTGCCCGGTGTTGTA
GAGTGGTGTCTCTGGTAAAAGGAGACCAGACCCAAACTTGCAAATGTTTATTTGTTCATTCACG
GACTGCACACAGGGTCTCTCAGAAATGGTTTTTTTGCCTGGGGTCTTTAGAAGTATTTATTCGA
GTTGCTGTTTGATTCTCAGACTTGAAGTCATCCAAACTCTTGTCAGTTTGTATCTTGAGTTTTT
ATAGTGACTCCAGCTTTCTAGCGTGATCTCTCCATCCTGGGCAGGGTGGGGGGTGTCCCCATTT
CTAGAGGGTTCTTAACCACAAAACTCTGTGCTATGTCAAGGCAGTTCTGTGCTGTCCAGTGGCC
ATGCCACACTGTCCCCCTCCAGGCTGTGTGGTGGCCCTTCATCTTCATGCCTCAGTTAGTGTCC
ACCTGAAGTGCTCAGAATTGACTAATCTCCTAGGTTCGGAGCCCCTGCTGACCTTGGGCCCGAC
ACCAGCGCACATGAATAAAGGTTCTGTACAGCCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001231151	(Get FASTA)	NCBI Sequence Viewer
	XP_013852237	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000045577
	ENSSSCP00000045577.1
	ENSSSCP00025042853.1
	ENSSSCP00025042918.1
	ENSSSCP00030045568.1
	ENSSSCP00035022899.1
	ENSSSCP00035022900.1
	ENSSSCP00040002044.1
	ENSSSCP00045044174.1
	ENSSSCP00050041149.1
	ENSSSCP00055017681.1
	ENSSSCP00055017695.1
	ENSSSCP00060034598.1
	ENSSSCP00065028324.1
	ENSSSCP00070024423.1
	ENSSSCP00070024428.1

RefSeq Acc Id:	XP_013852237 ⟸ XM_013996783
- Peptide Label:	isoform X1
- UniProtKB:	A0A8D1BQG4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDVPAVLAPPAPAPAQRGPQLGGGPGRTRRAPGPARRRLLLLRSPEDDAQGQQCGEARPAGPGG GGGGGGGDSFVVLLEVARGAAEAPGRLEPEPEPSVAASPAGRPAQALGGEALVSPTGAPLASPG AAGGQDLVVRLERGVLALAAPPRGSPPDREAACPAEARRAPAGPGYRCPEPQCALLFAKKHQLK VHLLTHSGGQGRRPFKCPLDGCGWAFTTSYKLKRHLQSHDKLRPFGCPVGGCGKKFTTVYNLKA HMKGHEQESLFKCEVCAERFPTHAKLSSHQRSHFEPERPYKCDYPGCEKTFITVSALFSHNRAH FREQELFSCSFPGCSKQYDKACRLKIHLRSHTGERPFICDSDSCGWTFTSMSKLLRHKRKHEDD RRFACPVEGCGKSFTRAEHLKGHSVTHLGTKPFVCPVEGCCARFSARSSLYIHSKKHLQDVAPK SRCPASSCDRLFASKHNGKAHVGRQPRRHPDLFPPLGAPSALTPSSDLSGPGQSEFSNVDLALL FSDTPGDNSGAAGASDEALSAGILTIDVTSMSSSLGGDLPTSHTSLGPMDPLVLVAHSDVPPGP DSPLVLGTAATVLQQRSFAMDDTQGVGAGALGCLVAVPVKSLSLDPPALTSGSSSAANTCMPAS ASSTQGNTSVPELLVPIKVEADSPPGPDTIRQQERSRGAPRPVLSSPAEEHGPQTDAGLGAGTS GLSLEGGGSARTDSRAIQLAKKIKQKGAGSSAGGASCSWRGCRA hide sequence

RefSeq Acc Id:

NP_001231151 ⟸ NM_001244222

- UniProtKB:

A0A287ANV2 (UniProtKB/TrEMBL), A0A4X1U916 (UniProtKB/TrEMBL), A0A8D2C9U9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDVPAVLAPPAPAPAQRGPQLGGGPGRTRRAPGPARRRLLLLRSPEDDAQGQQCGEARPAGPGG
GGGGGGGDSFVVLLEVARGAAEAPGRLEPEPEPSVAASPAGRPAQALGGEALVSPTGAPLASPG
AAGGQDLVVRLERGVLALAAPPRGSPPDREAACPAEARRAPAGPGYRCPEPQCALLFAKKHQLK
VHLLTHSGGQGRRPFKCPLDGCGWAFTTSYKLKRHLQSHDKLRPFGCPVGGCGKKFTTVYNLKA
HMKGHEQESLFKCEVCAERFPTHAKLSSHQRSHFEPERPYKCDYPGCEKTFITVSALFSHNRAH
FREQELFSCSFPGCSKQYDKACRLKIHLRSHTGERPFICDSDSCGWTFTSMSKLLRHKRKHEDD
RRFACPVEGCGKSFTRAEHLKGHSVTHLGTKPFVCPVEGCCARFSARSSLYIHSKKHLQDVAPK
SRCPASSCDRLFASKHNGKAHVGRQPRRHPDLFPPLGAPSALTPSSDLSGPGQSEFSNVDLALL
FSDTPGDNSGAAGASDEALSAGILTIDVTSMSSSLGGDLPTSHTSLGPMDPLVLVAHSDVPPGP
DSPLVLGTAATVLQQRSFAMDDTQGVGAGALGCLVAVPVKSLSLDPPALTSGSSSAANTCMPAS
ASSTQGNTSVPELLVPIKVEADSPPGPDTIRQQERSRGAPRPVLSSPAEEHGPQTDAGLGAGTS
GLSLEGGGSARTDSRAIQLAKKIKQKGAGSSAGATGPAQTRGKDDDPGSPTCVPASPSGWVWGS
LVVPSVQVQLLQDDPAGEAGLPLALSPQPSAFRPLLAIDFPVYVLQEVLPAAGGAAGPEDTQRS
GSTASLRDPQ

hide sequence

RefSeq Acc Id:

ENSSSCP00000038488 ⟸ ENSSSCT00000039116

RefSeq Acc Id:

ENSSSCP00000045577 ⟸ ENSSSCT00000057328

Protein Domains

C2H2-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000001824	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00025071026	UniProtKB/TrEMBL
	ENSSSCG00030070789	UniProtKB/TrEMBL
	ENSSSCG00035042840	UniProtKB/TrEMBL
	ENSSSCG00040004243	UniProtKB/TrEMBL
	ENSSSCG00045036371	UniProtKB/TrEMBL
	ENSSSCG00050070097	UniProtKB/TrEMBL
	ENSSSCG00055011348	UniProtKB/TrEMBL
	ENSSSCG00060058607	UniProtKB/TrEMBL
	ENSSSCG00065047790	UniProtKB/TrEMBL
	ENSSSCG00070014930	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000057328	ENTREZGENE
	ENSSSCT00000057328.3	UniProtKB/TrEMBL
	ENSSSCT00025097579.1	UniProtKB/TrEMBL
	ENSSSCT00025097700.1	UniProtKB/TrEMBL
	ENSSSCT00030099033.1	UniProtKB/TrEMBL
	ENSSSCT00035056933.1	UniProtKB/TrEMBL
	ENSSSCT00035056935.1	UniProtKB/TrEMBL
	ENSSSCT00040005538.1	UniProtKB/TrEMBL
	ENSSSCT00045062692.1	UniProtKB/TrEMBL
	ENSSSCT00050095581.1	UniProtKB/TrEMBL
	ENSSSCT00055022308.1	UniProtKB/TrEMBL
	ENSSSCT00055022329.1	UniProtKB/TrEMBL
	ENSSSCT00060079937.1	UniProtKB/TrEMBL
	ENSSSCT00065065379.1	UniProtKB/TrEMBL
	ENSSSCT00070029305.1	UniProtKB/TrEMBL
	ENSSSCT00070029310.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
KEGG Report	ssc:100156021	UniProtKB/TrEMBL
NCBI Gene	ZXDC	ENTREZGENE
PANTHER	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN ZXDC	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A287ANV2	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1U916	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1U920_PIG	UniProtKB/TrEMBL
	A0A8D0ZW72_PIG	UniProtKB/TrEMBL
	A0A8D1BQG4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1NLR7_PIG	UniProtKB/TrEMBL
	A0A8D2C9U9	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:95343	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar