TULP2 (TUB like protein 2) - Rat Genome Database

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Gene: TULP2 (TUB like protein 2) Sus scrofa
Analyze
Symbol: TULP2
Name: TUB like protein 2
RGD ID: 13949273
Description: ENCODES a protein that exhibits protein-containing complex binding (inferred); INVOLVED IN protein localization to cilium (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cilium (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tubby like protein 2; tubby-related protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,175,890 - 54,186,889 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,176,629 - 54,185,498 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,142,039 - 50,151,806 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cilium  (IBA,IEA)
extracellular region  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TULP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,175,890 - 54,186,889 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,176,629 - 54,185,498 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,142,039 - 50,151,806 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TULP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381948,880,967 - 48,898,744 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1948,880,965 - 48,898,744 (-)EnsemblGRCh38hg38GRCh38
GRCh371949,384,224 - 49,402,001 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,076,034 - 54,093,750 (-)NCBINCBI36Build 36hg18NCBI36
Build 341954,076,033 - 54,093,750NCBI
Celera1946,251,586 - 46,269,352 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1945,760,666 - 45,778,459 (-)NCBIHuRef
CHM1_11949,386,090 - 49,403,863 (-)NCBICHM1_1
T2T-CHM13v2.01951,875,830 - 51,893,605 (-)NCBIT2T-CHM13v2.0
Tulp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39745,131,450 - 45,173,070 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl745,131,301 - 45,173,056 (+)EnsemblGRCm39 Ensembl
GRCm38745,482,026 - 45,523,646 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,481,877 - 45,523,632 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,769,076 - 52,777,973 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36745,385,986 - 45,390,422 (+)NCBIMGSCv36mm8
Celera740,970,209 - 40,979,101 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.33NCBI
Tulp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81105,098,884 - 105,136,243 (+)NCBIGRCr8
mRatBN7.2195,962,496 - 95,999,775 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,962,496 - 96,000,628 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1101,347,924 - 101,384,996 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,820,601 - 109,857,672 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01103,110,994 - 103,148,064 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,474,334 - 101,511,621 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,474,334 - 101,511,412 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,553,246 - 102,590,399 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,955,336 - 95,993,534 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1196,033,446 - 96,071,643 (+)NCBI
Celera190,218,419 - 90,255,261 (+)NCBICelera
Cytogenetic Map1q22NCBI
Tulp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555591,740,750 - 1,749,036 (+)NCBIChiLan1.0ChiLan1.0
TULP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22054,983,241 - 55,003,801 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11956,909,407 - 56,930,100 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01945,881,283 - 45,898,921 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11954,857,706 - 54,874,618 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1954,857,741 - 54,874,618 (+)Ensemblpanpan1.1panPan2
TULP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,476,531 - 107,484,764 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,476,955 - 107,484,765 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,998,986 - 107,007,392 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01108,001,134 - 108,009,540 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1108,002,711 - 108,009,538 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,668,739 - 107,676,748 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01107,314,964 - 107,323,361 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01108,150,581 - 108,158,985 (+)NCBIUU_Cfam_GSD_1.0
Tulp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,297,131 - 21,305,665 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366642,914,878 - 2,923,175 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366642,915,251 - 2,923,783 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TULP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,115,794 - 42,133,390 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607321,999,669 - 22,017,085 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tulp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248325,085,565 - 5,094,661 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TULP2
100 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system nervous system reproductive system
High
Medium
Low 1 2 1
Below cutoff 3 13

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000003495   ⟹   ENSSSCP00000003412
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl654,175,890 - 54,186,646 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000064928   ⟹   ENSSSCP00000049452
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl654,177,373 - 54,186,889 (-)Ensembl
RefSeq Acc Id: XM_021094706   ⟹   XP_020950365
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,176,629 - 54,185,498 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094707   ⟹   XP_020950366
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,177,372 - 54,185,498 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020950365 (Get FASTA)   NCBI Sequence Viewer  
  XP_020950366 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000003412
  ENSSSCP00000003412.4
  ENSSSCP00000049452.3
  ENSSSCP00065028881.1
Reference Protein Sequences
RefSeq Acc Id: XP_020950365   ⟸   XM_021094706
- Peptide Label: isoform X1
- UniProtKB: A0A8D1Z948 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950366   ⟸   XM_021094707
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000049452   ⟸   ENSSSCT00000064928
RefSeq Acc Id: ENSSSCP00000003412   ⟸   ENSSSCT00000003495
Protein Domains
Tubby C-terminal   Tubby N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003149 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00065048690 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003495 ENTREZGENE
  ENSSSCT00000003495.5 UniProtKB/TrEMBL
  ENSSSCT00000064928.3 UniProtKB/TrEMBL
  ENSSSCT00065066607.1 UniProtKB/TrEMBL
InterPro Tubby-like_C UniProtKB/TrEMBL
  Tubby_C UniProtKB/TrEMBL
  Tubby_C_CS UniProtKB/TrEMBL
  Tubby_N UniProtKB/TrEMBL
NCBI Gene TULP2 ENTREZGENE
PANTHER TUBBY-RELATED UniProtKB/TrEMBL
  TUBBY-RELATED PROTEIN 2 UniProtKB/TrEMBL
Pfam Tub UniProtKB/TrEMBL
  Tub_N UniProtKB/TrEMBL
PRINTS SUPERTUBBY UniProtKB/TrEMBL
PROSITE TUB_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF54518 UniProtKB/TrEMBL
UniProt A0A287AZ63_PIG UniProtKB/TrEMBL
  A0A8D1Z948 ENTREZGENE, UniProtKB/TrEMBL
  F1RIP7_PIG UniProtKB/TrEMBL
VGNC ID VGNC:94590 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-16 TULP2  TUB like protein 2    tubby like protein 2  Symbol and/or name change 5135510 APPROVED