OCIAD1 (OCIA domain containing 1) - Rat Genome Database

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Gene: OCIAD1 (OCIA domain containing 1) Sus scrofa
Analyze
Symbol: OCIAD1
Name: OCIA domain containing 1
RGD ID: 13948578
Description: INVOLVED IN regulation of stem cell differentiation (inferred); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); genetic disease (ortholog); FOUND IN endosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: OCIA domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl838,745,338 - 38,769,253 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1838,745,415 - 38,769,255 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2840,854,812 - 40,876,447 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
endosome  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
OCIAD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl838,745,338 - 38,769,253 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1838,745,415 - 38,769,255 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2840,854,812 - 40,876,447 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OCIAD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38448,805,156 - 48,861,815 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl448,805,212 - 48,861,817 (+)EnsemblGRCh38hg38GRCh38
GRCh37448,833,105 - 48,863,832 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36448,527,772 - 48,558,589 (+)NCBINCBI36Build 36hg18NCBI36
Build 34448,674,032 - 48,704,191NCBI
Celera449,281,441 - 49,312,217 (+)NCBICelera
Cytogenetic Map4p11NCBI
HuRef448,152,833 - 48,183,618 (+)NCBIHuRef
CHM1_1448,832,196 - 48,862,985 (+)NCBICHM1_1
T2T-CHM13v2.0448,797,241 - 48,828,402 (+)NCBIT2T-CHM13v2.0
Ociad1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39573,450,093 - 73,471,420 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl573,450,127 - 73,471,412 (+)EnsemblGRCm39 Ensembl
GRCm38573,292,769 - 73,314,077 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl573,292,784 - 73,314,069 (+)EnsemblGRCm38mm10GRCm38
MGSCv37573,684,033 - 73,705,316 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36573,571,959 - 73,593,219 (+)NCBIMGSCv36mm8
Celera570,547,592 - 70,568,648 (+)NCBICelera
Cytogenetic Map5C3.2NCBI
cM Map538.44NCBI
Ociad1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81435,251,891 - 35,269,440 (-)NCBIGRCr8
mRatBN7.21434,897,851 - 34,915,291 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1434,897,847 - 34,915,286 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1435,262,363 - 35,279,725 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01436,567,122 - 36,584,484 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01435,055,447 - 35,072,810 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01437,458,023 - 37,475,485 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1437,458,029 - 37,475,418 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01437,276,455 - 37,293,910 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41437,301,310 - 37,318,693 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11437,303,745 - 37,321,128 (-)NCBI
Celera1434,156,121 - 34,173,877 (-)NCBICelera
Cytogenetic Map14p11NCBI
Ociad1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544718,844,270 - 18,870,368 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544718,844,270 - 18,870,368 (-)NCBIChiLan1.0ChiLan1.0
OCIAD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2379,004,731 - 79,034,657 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1479,266,388 - 79,296,271 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0473,293,733 - 73,323,889 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1484,022,714 - 84,052,802 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl484,022,716 - 84,052,739 (-)Ensemblpanpan1.1panPan2
OCIAD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11344,608,474 - 44,634,665 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1344,565,044 - 44,634,263 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1344,560,897 - 44,587,081 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01345,211,167 - 45,237,366 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1345,211,132 - 45,237,484 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11344,886,280 - 44,912,850 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01344,421,306 - 44,447,489 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01345,300,618 - 45,326,814 (+)NCBIUU_Cfam_GSD_1.0
Ociad1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528531,492,528 - 31,517,951 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648214,780,326 - 14,807,182 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648214,780,284 - 14,805,718 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OCIAD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1271,394,512 - 1,424,286 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl271,391,852 - 1,424,270 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604747,384,844 - 47,414,633 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ociad1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476118,144,270 - 18,171,205 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in OCIAD1
687 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021101189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021101199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002346628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK232368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK391765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK392685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK394378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK396258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01108627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSSCT00000092598   ⟹   ENSSSCP00000075976
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl838,745,475 - 38,769,252 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000095523   ⟹   ENSSSCP00000075257
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl838,745,431 - 38,769,252 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000099379   ⟹   ENSSSCP00000080883
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl838,747,235 - 38,769,252 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000104227   ⟹   ENSSSCP00000078347
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl838,745,338 - 38,769,253 (+)Ensembl
RefSeq Acc Id: XM_021101189   ⟹   XP_020956848
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1838,745,416 - 38,769,255 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101190   ⟹   XP_020956849
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1838,745,415 - 38,769,255 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101191   ⟹   XP_020956850
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1838,745,415 - 38,769,255 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101192   ⟹   XP_020956851
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1838,745,429 - 38,769,255 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101193   ⟹   XP_020956852
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1838,745,459 - 38,769,255 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101194   ⟹   XP_020956853
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1838,745,459 - 38,769,255 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101195   ⟹   XP_020956854
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1838,745,694 - 38,769,255 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101196   ⟹   XP_020956855
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1838,745,425 - 38,769,255 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101197   ⟹   XP_020956856
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1838,745,457 - 38,769,255 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101198   ⟹   XP_020956857
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1838,745,429 - 38,769,255 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101199   ⟹   XP_020956858
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1838,745,681 - 38,769,255 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002346628
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1838,745,456 - 38,769,255 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020956850   ⟸   XM_021101191
- Peptide Label: isoform X3
- UniProtKB: A0A8W4FGA8 (UniProtKB/TrEMBL),   A0A480WBD6 (UniProtKB/TrEMBL),   A0A8D1A333 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956849   ⟸   XM_021101190
- Peptide Label: isoform X2
- UniProtKB: A0A8W4FAV4 (UniProtKB/TrEMBL),   A0A480WBD6 (UniProtKB/TrEMBL),   A0A8D1A333 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956848   ⟸   XM_021101189
- Peptide Label: isoform X1
- UniProtKB: A0A8W4FAD4 (UniProtKB/TrEMBL),   A0A8D1XUH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956855   ⟸   XM_021101196
- Peptide Label: isoform X2
- UniProtKB: A0A8W4FAV4 (UniProtKB/TrEMBL),   A0A480WBD6 (UniProtKB/TrEMBL),   A0A8D1A333 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956857   ⟸   XM_021101198
- Peptide Label: isoform X3
- UniProtKB: A0A8W4FGA8 (UniProtKB/TrEMBL),   A0A480WBD6 (UniProtKB/TrEMBL),   A0A8D1A333 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956851   ⟸   XM_021101192
- Peptide Label: isoform X1
- UniProtKB: A0A8W4FAD4 (UniProtKB/TrEMBL),   A0A8D1XUH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956856   ⟸   XM_021101197
- Peptide Label: isoform X2
- UniProtKB: A0A8W4FAV4 (UniProtKB/TrEMBL),   A0A480WBD6 (UniProtKB/TrEMBL),   A0A8D1A333 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956852   ⟸   XM_021101193
- Peptide Label: isoform X1
- UniProtKB: A0A8W4FAD4 (UniProtKB/TrEMBL),   A0A8D1XUH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956853   ⟸   XM_021101194
- Peptide Label: isoform X1
- UniProtKB: A0A8W4FAD4 (UniProtKB/TrEMBL),   A0A8D1XUH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956858   ⟸   XM_021101199
- Peptide Label: isoform X3
- UniProtKB: A0A8W4FGA8 (UniProtKB/TrEMBL),   A0A480WBD6 (UniProtKB/TrEMBL),   A0A8D1A333 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956854   ⟸   XM_021101195
- Peptide Label: isoform X1
- UniProtKB: A0A8W4FAD4 (UniProtKB/TrEMBL),   A0A8D1XUH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000078347   ⟸   ENSSSCT00000104227
RefSeq Acc Id: ENSSSCP00000080883   ⟸   ENSSSCT00000099379
RefSeq Acc Id: ENSSSCP00000075976   ⟸   ENSSSCT00000092598
RefSeq Acc Id: ENSSSCP00000075257   ⟸   ENSSSCT00000095523
Protein Domains
OCIA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000058121 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035050727 UniProtKB/TrEMBL
  ENSSSCG00055008847 UniProtKB/TrEMBL
  ENSSSCG00065016210 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000092598 ENTREZGENE
  ENSSSCT00000092598.1 UniProtKB/TrEMBL
  ENSSSCT00000095523 ENTREZGENE
  ENSSSCT00000095523.1 UniProtKB/TrEMBL
  ENSSSCT00000099379 ENTREZGENE
  ENSSSCT00000099379.1 UniProtKB/TrEMBL
  ENSSSCT00000104227 ENTREZGENE
  ENSSSCT00000104227.1 UniProtKB/TrEMBL
  ENSSSCT00035067613.1 UniProtKB/TrEMBL
  ENSSSCT00035067623.1 UniProtKB/TrEMBL
  ENSSSCT00035067631.1 UniProtKB/TrEMBL
  ENSSSCT00035067636.1 UniProtKB/TrEMBL
  ENSSSCT00035067647.1 UniProtKB/TrEMBL
  ENSSSCT00055017446.1 UniProtKB/TrEMBL
  ENSSSCT00055017521.1 UniProtKB/TrEMBL
  ENSSSCT00055017571.1 UniProtKB/TrEMBL
  ENSSSCT00055017633.1 UniProtKB/TrEMBL
  ENSSSCT00055017685.1 UniProtKB/TrEMBL
  ENSSSCT00055017770.1 UniProtKB/TrEMBL
  ENSSSCT00065021583.1 UniProtKB/TrEMBL
  ENSSSCT00065021611.1 UniProtKB/TrEMBL
  ENSSSCT00065021618.1 UniProtKB/TrEMBL
  ENSSSCT00065021627.1 UniProtKB/TrEMBL
  ENSSSCT00065021635.1 UniProtKB/TrEMBL
  ENSSSCT00065021691.1 UniProtKB/TrEMBL
InterPro OCAD1/2 UniProtKB/TrEMBL
  OCIA_dom UniProtKB/TrEMBL
NCBI Gene OCIAD1 ENTREZGENE
PANTHER OCIA DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR13336 UniProtKB/TrEMBL
Pfam OCIA UniProtKB/TrEMBL
UniProt A0A480WBD6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1A333 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1A668_PIG UniProtKB/TrEMBL
  A0A8D1A709_PIG UniProtKB/TrEMBL
  A0A8D1A8J3_PIG UniProtKB/TrEMBL
  A0A8D1Q4M3_PIG UniProtKB/TrEMBL
  A0A8D1XUH8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FAD4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FAV4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FGA8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FPM5_PIG UniProtKB/TrEMBL