UTP20 (UTP20 small subunit processome component) - Rat Genome Database

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Gene: UTP20 (UTP20 small subunit processome component) Sus scrofa
Analyze
Symbol: UTP20
Name: UTP20 small subunit processome component
RGD ID: 13948259
Description: INVOLVED IN ribosomal small subunit biogenesis (inferred); rRNA processing (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN 90S preribosome (inferred); nucleolus (inferred); plasma membrane (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small subunit processome component 20 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl582,813,717 - 82,913,155 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1582,810,700 - 82,913,176 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2586,806,041 - 86,907,727 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
UTP20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl582,813,717 - 82,913,155 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1582,810,700 - 82,913,176 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2586,806,041 - 86,907,727 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UTP20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812101,280,105 - 101,386,618 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12101,280,105 - 101,386,618 (+)EnsemblGRCh38hg38GRCh38
GRCh3712101,673,883 - 101,780,396 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612100,198,036 - 100,304,528 (+)NCBINCBI36Build 36hg18NCBI36
Celera12101,339,214 - 101,445,692 (+)NCBICelera
Cytogenetic Map12q23.2NCBI
HuRef1298,734,067 - 98,840,479 (+)NCBIHuRef
CHM1_112101,639,865 - 101,746,373 (+)NCBICHM1_1
T2T-CHM13v2.012101,241,888 - 101,347,734 (+)NCBIT2T-CHM13v2.0
Utp20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391088,582,469 - 88,662,676 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1088,582,469 - 88,662,666 (-)EnsemblGRCm39 Ensembl
GRCm381088,746,607 - 88,826,814 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1088,746,607 - 88,826,804 (-)EnsemblGRCm38mm10GRCm38
MGSCv371088,209,352 - 88,289,559 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361088,175,667 - 88,256,613 (-)NCBIMGSCv36mm8
Celera1090,726,629 - 90,806,960 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1044.21NCBI
Utp20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8725,022,029 - 25,103,024 (-)NCBIGRCr8
mRatBN7.2723,134,630 - 23,215,639 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl723,134,637 - 23,215,632 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx725,129,194 - 25,210,018 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0727,291,898 - 27,372,560 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0727,068,936 - 27,149,757 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0729,296,360 - 29,378,105 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl729,296,963 - 29,378,080 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0729,399,165 - 29,480,171 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4725,419,625 - 25,501,987 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera720,293,710 - 20,374,246 (-)NCBICelera
Cytogenetic Map7q13NCBI
Utp20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540536,830,176 - 36,909,967 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540536,829,984 - 36,910,149 (+)NCBIChiLan1.0ChiLan1.0
UTP20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210109,350,241 - 109,458,061 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112109,346,640 - 109,454,461 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01298,865,121 - 98,972,914 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112102,265,283 - 102,372,830 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12102,265,283 - 102,372,830 (+)Ensemblpanpan1.1panPan2
UTP20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11540,291,344 - 40,387,200 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1540,291,390 - 40,387,032 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1540,659,968 - 40,756,261 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01540,945,936 - 41,042,475 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1540,945,935 - 41,041,869 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11540,201,734 - 40,297,982 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01540,310,266 - 40,406,738 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01540,584,482 - 40,681,018 (+)NCBIUU_Cfam_GSD_1.0
Utp20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494519,587,839 - 19,682,872 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649212,598,308 - 12,693,514 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649212,598,178 - 12,693,279 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UTP20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11196,549,046 - 96,657,494 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1196,549,037 - 96,659,699 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037148,345,723 - 148,454,642 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Utp20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247506,526,831 - 6,603,516 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247506,526,692 - 6,603,707 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UTP20
3858 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 3 1 1 1 1
Low 10 3 3 2 2 22 1 2 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000000949   ⟹   ENSSSCP00000000929
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl582,813,717 - 82,913,155 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000076059   ⟹   ENSSSCP00000063805
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl582,813,714 - 82,912,022 (-)Ensembl
RefSeq Acc Id: XM_005664203   ⟹   XP_005664260
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1582,810,700 - 82,913,176 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005664260   ⟸   XM_005664203
- UniProtKB: A0A4X1SZD0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000000929   ⟸   ENSSSCT00000000949
RefSeq Acc Id: ENSSSCP00000063805   ⟸   ENSSSCT00000076059
Protein Domains
U3 small nucleolar RNA-associated protein 20 C-   U3 small nucleolar RNA-associated protein 20 N-


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000869 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005043454 UniProtKB/TrEMBL
  ENSSSCG00025052890 UniProtKB/TrEMBL
  ENSSSCG00035045839 UniProtKB/TrEMBL
  ENSSSCG00065030231 UniProtKB/TrEMBL
  ENSSSCG00070004982 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000000949 ENTREZGENE
  ENSSSCT00000000949.5 UniProtKB/TrEMBL
  ENSSSCT00005070225.1 UniProtKB/TrEMBL
  ENSSSCT00005070337.1 UniProtKB/TrEMBL
  ENSSSCT00005070446.1 UniProtKB/TrEMBL
  ENSSSCT00005070473.1 UniProtKB/TrEMBL
  ENSSSCT00025072398.1 UniProtKB/TrEMBL
  ENSSSCT00035060955.1 UniProtKB/TrEMBL
  ENSSSCT00065040811.1 UniProtKB/TrEMBL
  ENSSSCT00070009663.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  DRIM UniProtKB/TrEMBL
  UTP20_C UniProtKB/TrEMBL
NCBI Gene UTP20 ENTREZGENE
PANTHER SMALL SUBUNIT PROCESSOME COMPONENT 20 HOMOLOG UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam DRIM UniProtKB/TrEMBL
  DUF6700 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A4X1SZD0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0M256_PIG UniProtKB/TrEMBL
  A0A8D0M262_PIG UniProtKB/TrEMBL
  A0A8D0M2S3_PIG UniProtKB/TrEMBL
  F1SRI4_PIG UniProtKB/TrEMBL
VGNC ID VGNC:94784 ENTREZGENE