RTP1 (receptor transporter protein 1) - Rat Genome Database

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Gene: RTP1 (receptor transporter protein 1) Sus scrofa
Analyze
Symbol: RTP1
Name: receptor transporter protein 1
RGD ID: 13947746
Description: ENCODES a protein that exhibits olfactory receptor binding (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of bitter taste (inferred); protein insertion into membrane (inferred); protein targeting to membrane (inferred); ASSOCIATED WITH 3MC syndrome 1 (ortholog); genetic disease (ortholog); FOUND IN cell surface (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: receptor-transporting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13124,936,213 - 124,942,119 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113124,935,515 - 124,942,119 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213134,387,475 - 134,393,443 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell surface  (IBA,IEA)
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RTP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13124,936,213 - 124,942,119 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113124,935,515 - 124,942,119 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213134,387,475 - 134,393,443 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RTP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383187,197,486 - 187,201,462 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3187,197,486 - 187,201,462 (+)EnsemblGRCh38hg38GRCh38
GRCh373186,915,274 - 186,919,250 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363188,397,968 - 188,401,947 (+)NCBINCBI36Build 36hg18NCBI36
Celera3185,347,101 - 185,351,080 (+)NCBICelera
Cytogenetic Map3q27.3NCBI
HuRef3184,319,685 - 184,323,663 (+)NCBIHuRef
CHM1_13186,878,640 - 186,882,619 (+)NCBICHM1_1
T2T-CHM13v2.03190,014,908 - 190,018,884 (+)NCBIT2T-CHM13v2.0
Rtp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391623,247,883 - 23,252,710 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1623,247,883 - 23,252,710 (+)EnsemblGRCm39 Ensembl
GRCm381623,429,133 - 23,433,960 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1623,429,133 - 23,433,960 (+)EnsemblGRCm38mm10GRCm38
MGSCv371623,429,206 - 23,434,033 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361623,344,467 - 23,349,294 (+)NCBIMGSCv36mm8
Celera1623,987,546 - 23,992,374 (+)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1614.21NCBI
Rtp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81190,927,633 - 90,930,149 (-)NCBIGRCr8
mRatBN7.21177,422,982 - 77,425,498 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1177,422,982 - 77,425,498 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1186,173,497 - 86,176,013 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01178,807,469 - 78,809,985 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01177,887,783 - 77,890,299 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01180,823,989 - 80,826,505 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1180,823,989 - 80,826,505 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01179,908,402 - 79,910,918 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41179,620,059 - 79,622,575 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1176,299,085 - 76,301,601 (-)NCBICelera
Cytogenetic Map11q23NCBI
Rtp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542020,620,380 - 20,625,103 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542020,622,226 - 20,625,073 (-)NCBIChiLan1.0ChiLan1.0
RTP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22185,066,940 - 185,072,091 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13185,071,653 - 185,076,809 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03184,223,049 - 184,227,029 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13192,687,985 - 192,691,979 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3192,687,161 - 192,715,367 (+)Ensemblpanpan1.1panPan2
RTP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13419,675,903 - 19,678,491 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3419,674,096 - 19,679,890 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3423,766,023 - 23,771,158 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03419,593,172 - 19,598,304 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3419,595,451 - 19,598,288 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13419,622,108 - 19,627,240 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03419,616,166 - 19,621,298 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03419,855,285 - 19,860,420 (+)NCBIUU_Cfam_GSD_1.0
Rtp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602116,793,760 - 116,797,883 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365782,886,994 - 2,889,557 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365782,886,994 - 2,889,557 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RTP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11581,438,984 - 81,472,965 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1581,468,965 - 81,471,522 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604154,900,050 - 54,963,802 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rtp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473069,655,572 - 69,658,350 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473069,655,572 - 69,658,350 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RTP1
141 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system musculoskeletal system nervous system reproductive system
High
Medium
Low 17 1
Below cutoff 1 1 1 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000058036   ⟹   ENSSSCP00000058549
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13124,936,213 - 124,942,119 (+)Ensembl
RefSeq Acc Id: XM_001927024   ⟹   XP_001927059
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113124,935,515 - 124,942,119 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_001927059   ⟸   XM_001927024
- UniProtKB: A0A287BQV7 (UniProtKB/TrEMBL),   A0A4X1UG20 (UniProtKB/TrEMBL),   A0A8D2BZ86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000058549   ⟸   ENSSSCT00000058036
Protein Domains
3CxxC-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037108 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015039973 UniProtKB/TrEMBL
  ENSSSCG00025002374 UniProtKB/TrEMBL
  ENSSSCG00030011263 UniProtKB/TrEMBL
  ENSSSCG00035081027 UniProtKB/TrEMBL
  ENSSSCG00040069628 UniProtKB/TrEMBL
  ENSSSCG00045012832 UniProtKB/TrEMBL
  ENSSSCG00050044216 UniProtKB/TrEMBL
  ENSSSCG00055019270 UniProtKB/TrEMBL
  ENSSSCG00060050261 UniProtKB/TrEMBL
  ENSSSCG00065012235 UniProtKB/TrEMBL
  ENSSSCG00070016678 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000058036 ENTREZGENE
  ENSSSCT00000058036.3 UniProtKB/TrEMBL
  ENSSSCT00015053212.1 UniProtKB/TrEMBL
  ENSSSCT00025003069.1 UniProtKB/TrEMBL
  ENSSSCT00030015462.1 UniProtKB/TrEMBL
  ENSSSCT00035111265.1 UniProtKB/TrEMBL
  ENSSSCT00040095364.1 UniProtKB/TrEMBL
  ENSSSCT00045021836.1 UniProtKB/TrEMBL
  ENSSSCT00050060191.1 UniProtKB/TrEMBL
  ENSSSCT00055037701.1 UniProtKB/TrEMBL
  ENSSSCT00060068321.1 UniProtKB/TrEMBL
  ENSSSCT00065016269.1 UniProtKB/TrEMBL
  ENSSSCT00070032848.1 UniProtKB/TrEMBL
InterPro R-trans_p UniProtKB/TrEMBL
  Znf-3CxxC UniProtKB/TrEMBL
KEGG Report ssc:100153318 UniProtKB/TrEMBL
NCBI Gene RTP1 ENTREZGENE
PANTHER PTHR14402 UniProtKB/TrEMBL
  PTHR14402:SF19 UniProtKB/TrEMBL
Pfam zf-3CxxC UniProtKB/TrEMBL
SMART zf-3CxxC UniProtKB/TrEMBL
UniProt A0A287BQV7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UG20 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2BZ86 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92505 ENTREZGENE