ABCD4 (ATP binding cassette subfamily D member 4) - Rat Genome Database

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Gene: ABCD4 (ATP binding cassette subfamily D member 4) Sus scrofa
Analyze
Symbol: ABCD4
Name: ATP binding cassette subfamily D member 4
RGD ID: 13945943
Description: ENCODES a protein that exhibits ABC-type transporter activity (inferred); ABC-type vitamin B12 transporter activity (inferred); ATP binding (inferred); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); Disease Progression (ortholog); genetic disease (ortholog); FOUND IN lysosomal membrane (ortholog); peroxisome (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-binding cassette sub-family D member 4; ATP-binding cassette, sub-family D (ALD), member 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl797,567,712 - 97,585,679 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1797,568,193 - 97,585,693 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27103,411,768 - 103,428,256 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ABCD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl797,567,712 - 97,585,679 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1797,568,193 - 97,585,693 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27103,411,768 - 103,428,256 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABCD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381474,285,269 - 74,302,934 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1474,285,269 - 74,303,055 (-)EnsemblGRCh38hg38GRCh38
GRCh371474,751,972 - 74,769,637 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361473,821,733 - 73,839,512 (-)NCBINCBI36Build 36hg18NCBI36
Build 341473,821,880 - 73,839,420NCBI
Celera1454,789,295 - 54,807,078 (-)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1454,918,955 - 54,936,736 (-)NCBIHuRef
CHM1_11474,691,509 - 74,709,296 (-)NCBICHM1_1
T2T-CHM13v2.01468,493,125 - 68,510,780 (-)NCBIT2T-CHM13v2.0
Abcd4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391284,648,634 - 84,664,259 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1284,648,238 - 84,664,187 (-)EnsemblGRCm39 Ensembl
GRCm381284,601,869 - 84,617,485 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1284,601,464 - 84,617,413 (-)EnsemblGRCm38mm10GRCm38
MGSCv371285,943,481 - 85,958,416 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361285,492,401 - 85,507,118 (-)NCBIMGSCv36mm8
Celera1286,058,137 - 86,073,075 (-)NCBICelera
Cytogenetic Map12D1NCBI
cM Map1239.3NCBI
Abcd4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86109,977,541 - 109,992,050 (-)NCBIGRCr8
mRatBN7.26104,246,459 - 104,260,965 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6104,246,468 - 104,280,276 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6104,415,118 - 104,429,485 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06104,714,203 - 104,728,570 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06104,083,790 - 104,098,157 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06108,315,026 - 108,329,550 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6108,315,035 - 108,329,464 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06117,216,141 - 117,231,218 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46108,667,269 - 108,681,707 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16108,670,724 - 108,679,543 (-)NCBI
Celera6102,074,425 - 102,088,878 (-)NCBICelera
Cytogenetic Map6q31NCBI
Abcd4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555231,170,303 - 1,182,467 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555231,170,306 - 1,181,352 (+)NCBIChiLan1.0ChiLan1.0
ABCD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21575,364,069 - 75,381,181 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11474,580,573 - 74,597,671 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01454,833,388 - 54,850,482 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11473,684,109 - 73,701,344 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1473,684,109 - 73,701,344 (-)Ensemblpanpan1.1panPan2
ABCD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1847,488,414 - 47,507,041 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl847,488,475 - 47,504,654 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha847,173,373 - 47,191,986 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0847,715,766 - 47,732,070 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1847,384,860 - 47,403,479 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0847,406,500 - 47,425,091 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0847,793,455 - 47,812,081 (-)NCBIUU_Cfam_GSD_1.0
Abcd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864028,530,121 - 28,544,921 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364883,523,344 - 3,538,858 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364883,526,875 - 3,538,851 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12451,497,440 - 51,516,919 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2451,495,790 - 51,516,905 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605339,731,077 - 39,751,694 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abcd4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473427,309,184 - 27,327,200 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473427,309,280 - 27,324,658 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ABCD4
496 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2
Low 9 4 3 5 2 23 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000037529   ⟹   ENSSSCP00000051619
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl797,567,712 - 97,585,655 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000090292   ⟹   ENSSSCP00000069323
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl797,574,425 - 97,585,679 (-)Ensembl
RefSeq Acc Id: XM_001929196   ⟹   XP_001929231
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1797,568,193 - 97,585,693 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_001929231 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000051619
  ENSSSCP00000051619.2
  ENSSSCP00000069323.1
  ENSSSCP00005040157.1
  ENSSSCP00070015442.1
RefSeq Acc Id: XP_001929231   ⟸   XM_001929196
- UniProtKB: A0A287B6A3 (UniProtKB/TrEMBL),   A0A4X1THT1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000069323   ⟸   ENSSSCT00000090292
RefSeq Acc Id: ENSSSCP00000051619   ⟸   ENSSSCT00000037529

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038231 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005040337 UniProtKB/TrEMBL
  ENSSSCG00070009515 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000037529 ENTREZGENE
  ENSSSCT00000037529.2 UniProtKB/TrEMBL
  ENSSSCT00000090292.1 UniProtKB/TrEMBL
  ENSSSCT00005064983.1 UniProtKB/TrEMBL
  ENSSSCT00070018583.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1560.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC1_TM_dom UniProtKB/TrEMBL
  ABC1_TM_sf UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene ABCD4 ENTREZGENE
PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER UniProtKB/TrEMBL
  LYSOSOMAL COBALAMIN TRANSPORTER ABCD4 UniProtKB/TrEMBL
Pfam ABC_membrane_2 UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TM1F UniProtKB/TrEMBL
  ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF90123 UniProtKB/TrEMBL
UniProt A0A287B6A3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1THT1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TKC0_PIG UniProtKB/TrEMBL
UniProt Secondary A0A5G2QYV0 UniProtKB/TrEMBL
VGNC ID VGNC:84964 ENTREZGENE