CRPPA (CDP-L-ribitol pyrophosphorylase A) - Rat Genome Database

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Gene: CRPPA (CDP-L-ribitol pyrophosphorylase A) Sus scrofa
Analyze
Symbol: CRPPA
Name: CDP-L-ribitol pyrophosphorylase A
RGD ID: 13943254
Description: ENCODES a protein that exhibits D-ribitol-5-phosphate cytidylyltransferase activity (inferred); protein homodimerization activity (inferred); INVOLVED IN axon guidance (ortholog); protein glycosylation (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2U (ortholog); congenital muscular dystrophy (ortholog); congenital muscular dystrophy due to integrin alpha-7 deficiency (ortholog); FOUND IN cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: isoprenoid synthase domain containing; isoprenoid synthase domain-containing protein; ISPD
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl985,415,550 - 85,710,752 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1985,419,401 - 85,711,146 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2994,460,506 - 94,549,186 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA,IEA)

Molecular Function

References

Genomics

Comparative Map Data
CRPPA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl985,415,550 - 85,710,752 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1985,419,401 - 85,711,146 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2994,460,506 - 94,549,186 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRPPA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl716,087,525 - 16,421,538 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl716,087,525 - 16,502,504 (-)EnsemblGRCh38hg38GRCh38
GRCh38716,087,525 - 16,421,538 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37716,127,150 - 16,461,163 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36716,097,786 - 16,427,472 (-)NCBINCBI36hg18NCBI36
Celera716,106,872 - 16,440,699 (-)NCBI
Cytogenetic Map7p21.2NCBI
HuRef716,012,324 - 16,347,484 (-)NCBIHuRef
CHM1_1716,126,841 - 16,460,716 (-)NCBICHM1_1
CRA_TCAGchr7v2716,180,240 - 16,514,081 (-)NCBI
Crppa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391236,430,334 - 36,739,502 (+)NCBIGRCm39mm39
GRCm39 Ensembl1236,431,449 - 36,739,502 (+)Ensembl
GRCm381236,380,575 - 36,689,503 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1236,381,450 - 36,689,503 (+)EnsemblGRCm38mm10GRCm38
MGSCv371237,108,106 - 37,416,031 (+)NCBIGRCm37mm9NCBIm37
MGSCv361236,891,849 - 37,015,131 (+)NCBImm8
Celera1237,825,234 - 38,127,522 (+)NCBICelera
Cytogenetic Map12A3NCBI
Crppa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2653,120,264 - 53,397,030 (+)NCBI
Rnor_6.0 Ensembl655,881,387 - 56,159,464 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0655,880,136 - 56,159,466 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0665,490,939 - 65,818,620 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4655,139,155 - 55,419,630 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1655,421,454 - 55,422,754 (+)NCBI
Celera652,259,290 - 52,534,570 (+)NCBICelera
Cytogenetic Map6q16-q21NCBI
Crppa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541019,359,868 - 19,614,344 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541019,359,495 - 19,614,283 (-)NCBIChiLan1.0ChiLan1.0
CRPPA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1716,076,235 - 16,405,268 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl716,077,091 - 16,405,220 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0716,747,569 - 17,078,389 (-)NCBIMhudiblu_PPA_v0panPan3
CRPPA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11430,697,060 - 30,989,423 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1430,648,128 - 30,989,604 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1430,218,221 - 30,510,640 (-)NCBI
ROS_Cfam_1.01430,609,518 - 30,909,358 (-)NCBI
UMICH_Zoey_3.11430,712,952 - 31,011,922 (-)NCBI
UNSW_CanFamBas_1.01430,431,982 - 30,724,382 (-)NCBI
UU_Cfam_GSD_1.01430,744,230 - 31,036,870 (-)NCBI
Crppa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511874,982,852 - 75,270,444 (-)NCBI
SpeTri2.0NW_0049365462,658,195 - 2,945,542 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRPPA
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12141,691,771 - 42,008,484 (+)NCBI
ChlSab1.1 Ensembl2141,691,912 - 42,010,301 (+)Ensembl
Crppa
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473913,813,779 - 14,114,296 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 2
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000016733   ⟹   ENSSSCP00000016287
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl985,422,290 - 85,710,556 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000047408   ⟹   ENSSSCP00000031888
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl985,422,290 - 85,710,556 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000060776   ⟹   ENSSSCP00000051300
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl985,423,018 - 85,710,752 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000090762   ⟹   ENSSSCP00000071179
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl985,415,550 - 85,710,751 (-)Ensembl
RefSeq Acc Id: XM_021063404   ⟹   XP_020919063
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1985,419,401 - 85,710,845 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063405   ⟹   XP_020919064
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1985,419,401 - 85,710,849 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063407   ⟹   XP_020919066
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1985,419,401 - 85,711,146 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020919063 (Get FASTA)   NCBI Sequence Viewer  
  XP_020919064 (Get FASTA)   NCBI Sequence Viewer  
  XP_020919066 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020919066   ⟸   XM_021063407
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020919064   ⟸   XM_021063405
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020919063   ⟸   XM_021063404
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSSSCP00000016287   ⟸   ENSSSCT00000016733
RefSeq Acc Id: ENSSSCP00000071179   ⟸   ENSSSCT00000090762
RefSeq Acc Id: ENSSSCP00000051300   ⟸   ENSSSCT00000060776
RefSeq Acc Id: ENSSSCP00000031888   ⟸   ENSSSCT00000047408
Protein Domains
ISPD_C


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015358 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000016287 UniProtKB/TrEMBL
  ENSSSCP00000031888 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000051300 UniProtKB/TrEMBL
  ENSSSCP00000071179 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016733 UniProtKB/TrEMBL
  ENSSSCT00000047408 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000060776 UniProtKB/TrEMBL
  ENSSSCT00000090762 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.10 UniProtKB/TrEMBL
InterPro IspD/TarI UniProtKB/TrEMBL
  ISPD_C UniProtKB/TrEMBL
  ISPD_synthase_CS UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene CRPPA ENTREZGENE
Pfam IspD UniProtKB/TrEMBL
  ISPD_C UniProtKB/TrEMBL
PROSITE ISPD UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A286ZKA4_PIG UniProtKB/TrEMBL
  A0A287B4E4_PIG UniProtKB/TrEMBL
  A0A5G2R248_PIG UniProtKB/TrEMBL
  F1SEJ2_PIG UniProtKB/TrEMBL
VGNC ID VGNC:87003 ENTREZGENE