POLR1C (RNA polymerase I and III subunit C) - Rat Genome Database
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Gene: POLR1C (RNA polymerase I and III subunit C) Sus scrofa
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Symbol: POLR1C
Name: RNA polymerase I and III subunit C
RGD ID: 13939346
Description: ENCODES a protein that exhibits DNA binding (inferred); protein dimerization activity (inferred); RNA polymerase I activity (inferred); INVOLVED IN transcription by RNA polymerase I (inferred); transcription by RNA polymerase III (inferred); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase III transcription pathway; ASSOCIATED WITH hypomyelinating leukodystrophy 11 (ortholog); Mandibulofacial Dysostosis (ortholog); Treacher Collins syndrome 3 (ortholog); FOUND IN RNA polymerase I complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: DNA-directed RNA polymerases I and III subunit RPAC1; RNA polymerase I subunit C; RNA polymerase I subunit hRPA39; RPA39
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,507,073 - 38,537,943 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,511,521 - 38,531,938 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,092,595 - 44,111,879 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
POLR1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,507,073 - 38,537,943 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,511,521 - 38,531,938 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,092,595 - 44,111,879 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POLR1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl643,509,702 - 43,562,419 (+)EnsemblGRCh38hg38GRCh38
GRCh38643,517,089 - 43,562,407 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37643,484,827 - 43,530,144 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,592,769 - 43,605,092 (+)NCBINCBI36hg18NCBI36
Celera645,036,412 - 45,048,735 (+)NCBI
Cytogenetic Map6p21.1NCBI
HuRef643,202,730 - 43,208,225 (+)NCBIHuRef
CHM1_1643,487,894 - 43,500,246 (+)NCBICHM1_1
Polr1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,554,846 - 46,558,971 (-)NCBIGRCm39mm39
GRCm39 Ensembl1746,554,846 - 46,558,980 (-)Ensembl
GRCm381746,243,920 - 46,248,045 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,243,920 - 46,248,054 (-)EnsemblGRCm38mm10GRCm38
MGSCv371746,380,869 - 46,384,994 (-)NCBIGRCm37mm9NCBIm37
MGSCv361745,707,509 - 45,711,545 (-)NCBImm8
Celera1749,677,058 - 49,681,183 (-)NCBICelera
Cytogenetic Map17CNCBI
Polr1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2914,735,740 - 14,739,852 (+)NCBI
Rnor_6.0 Ensembl917,120,759 - 17,124,871 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0917,120,759 - 17,124,871 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0916,017,436 - 16,021,548 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4910,298,309 - 10,302,421 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1910,295,630 - 10,299,743 (+)NCBI
Celera912,483,058 - 12,487,170 (+)NCBICelera
Cytogenetic Map9q12NCBI
Polr1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,346,397 - 9,350,591 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,346,397 - 9,350,591 (+)NCBIChiLan1.0ChiLan1.0
POLR1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1644,399,936 - 44,404,420 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl644,395,787 - 44,412,257 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0643,101,771 - 43,121,460 (+)NCBIMhudiblu_PPA_v0panPan3
POLR1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1211,978,422 - 12,008,579 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11211,978,337 - 11,982,265 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Polr1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647616,483,203 - 16,487,360 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLR1C
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,637,868 - 28,649,898 (-)NCBI
Polr1c
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475416,125,322 - 16,129,339 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 4 3 4 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000040334   ⟹   ENSSSCP00000036691
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl738,511,593 - 38,530,826 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000060718   ⟹   ENSSSCP00000034852
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl738,528,501 - 38,530,826 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000075419   ⟹   ENSSSCP00000072319
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl738,507,073 - 38,530,823 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000086396   ⟹   ENSSSCP00000065382
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl738,507,073 - 38,530,823 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000087037   ⟹   ENSSSCP00000060387
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl738,507,073 - 38,537,943 (+)Ensembl
RefSeq Acc Id: XM_005666040   ⟹   XP_005666097
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,511,521 - 38,531,938 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005666041   ⟹   XP_005666098
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1738,511,570 - 38,531,938 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005666097 (Get FASTA)   NCBI Sequence Viewer  
  XP_005666098 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAS55908 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005666097   ⟸   XM_005666040
- Peptide Label: isoform X1
- UniProtKB: A0A286ZT79 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005666098   ⟸   XM_005666041
- Peptide Label: isoform X2
- UniProtKB: A0A286ZY98 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000036691   ⟸   ENSSSCT00000040334
RefSeq Acc Id: ENSSSCP00000072319   ⟸   ENSSSCT00000075419
RefSeq Acc Id: ENSSSCP00000034852   ⟸   ENSSSCT00000060718
RefSeq Acc Id: ENSSSCP00000065382   ⟸   ENSSSCT00000086396
RefSeq Acc Id: ENSSSCP00000060387   ⟸   ENSSSCT00000087037
Protein Domains
RPOLD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028007 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000034852 UniProtKB/TrEMBL
  ENSSSCP00000036691 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000060387 UniProtKB/TrEMBL
  ENSSSCP00000065382 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000072319 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000040334 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000060718 UniProtKB/TrEMBL
  ENSSSCT00000075419 UniProtKB/TrEMBL
  ENSSSCT00000086396 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000087037 UniProtKB/TrEMBL
Gene3D-CATH 2.170.120.12 UniProtKB/TrEMBL
  3.30.1360.10 UniProtKB/TrEMBL
InterPro DNA-dir_RNA_pol_30-40kDasu_CS UniProtKB/TrEMBL
  DNA-dir_RNA_pol_insert UniProtKB/TrEMBL
  DNA-dir_RNA_pol_RpoA/D/Rpb3 UniProtKB/TrEMBL
  RBP11-like UniProtKB/TrEMBL
  RNAPI/II_AC40 UniProtKB/TrEMBL
  RNApol_insert_sf UniProtKB/TrEMBL
KEGG Report ssc:414414 UniProtKB/TrEMBL
NCBI Gene POLR1C ENTREZGENE
PANTHER PTHR11800:SF13 UniProtKB/TrEMBL
Pfam RNA_pol_A_bac UniProtKB/TrEMBL
  RNA_pol_L UniProtKB/TrEMBL
PROSITE RNA_POL_D_30KD UniProtKB/TrEMBL
SMART RPOLD UniProtKB/TrEMBL
Superfamily-SCOP SSF55257 UniProtKB/TrEMBL
  SSF56553 UniProtKB/TrEMBL
UniProt A0A286ZT79 ENTREZGENE, UniProtKB/TrEMBL
  A0A286ZY98 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QQ22_PIG UniProtKB/TrEMBL
  A0A5G2R496_PIG UniProtKB/TrEMBL
  A0A5G2R518_PIG UniProtKB/TrEMBL
VGNC ID VGNC:91644 ENTREZGENE