CMKLR2 (chemerin chemokine-like receptor 2) - Rat Genome Database

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Gene: CMKLR2 (chemerin chemokine-like receptor 2) Sus scrofa
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Symbol: CMKLR2
Name: chemerin chemokine-like receptor 2
RGD ID: 13938339
Description: ENCODES a protein that exhibits adipokinetic hormone binding (inferred); adipokinetic hormone receptor activity (inferred); complement receptor activity (inferred); INVOLVED IN G protein-coupled receptor signaling pathway (inferred); glucose homeostasis (inferred); inflammatory response (inferred); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); primary pulmonary hypertension (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred); membrane (inferred); nucleoplasm (inferred); INTERACTS WITH zearalenone
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: chemerin-like receptor 2; G protein-coupled receptor 1; G-protein coupled receptor 1; GPR1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15109,467,080 - 109,521,100 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115109,467,078 - 109,528,931 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215121,014,030 - 121,075,170 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
zearalenone  (EXP)

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CMKLR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15109,467,080 - 109,521,100 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115109,467,078 - 109,528,931 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215121,014,030 - 121,075,170 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CMKLR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382206,175,316 - 206,217,912 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2206,175,316 - 206,218,047 (-)EnsemblGRCh38hg38GRCh38
GRCh372207,040,040 - 207,082,636 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362206,748,285 - 206,791,016 (-)NCBINCBI36Build 36hg18NCBI36
Build 342206,865,546 - 206,903,651NCBI
Celera2200,797,465 - 200,840,208 (-)NCBICelera
Cytogenetic Map2q33.3NCBI
HuRef2198,888,686 - 198,931,422 (-)NCBIHuRef
CHM1_12207,046,224 - 207,088,951 (-)NCBICHM1_1
T2T-CHM13v2.02206,657,211 - 206,699,815 (-)NCBIT2T-CHM13v2.0
Cmklr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39163,221,737 - 63,253,714 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl163,221,850 - 63,253,702 (-)EnsemblGRCm39 Ensembl
GRCm38163,182,571 - 63,223,278 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl163,182,691 - 63,214,543 (-)EnsemblGRCm38mm10GRCm38
MGSCv37163,229,265 - 63,260,783 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36163,116,967 - 63,148,485 (-)NCBIMGSCv36mm8
Celera163,693,082 - 63,724,593 (-)NCBICelera
Cytogenetic Map1C2NCBI
cM Map132.31NCBI
Cmklr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8972,077,164 - 72,111,979 (-)NCBIGRCr8
mRatBN7.2964,583,310 - 64,617,883 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl964,585,594 - 64,586,655 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx973,089,043 - 73,090,104 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0978,209,969 - 78,211,030 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0976,516,600 - 76,517,661 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0969,958,607 - 69,991,410 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl969,959,025 - 69,960,086 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0969,767,734 - 69,800,172 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4961,837,807 - 61,838,868 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1961,984,788 - 61,985,850 (-)NCBI
Celera962,003,626 - 62,004,687 (-)NCBICelera
Cytogenetic Map9q32NCBI
Cmklr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554578,799,852 - 8,831,843 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554578,774,922 - 8,831,843 (+)NCBIChiLan1.0ChiLan1.0
CMKLR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213108,786,846 - 108,829,535 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B108,801,828 - 108,841,854 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B93,412,985 - 93,455,750 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B211,541,946 - 211,584,493 (-)NCBIpanpan1.1PanPan1.1panPan2
CMKLR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13714,725,573 - 14,776,009 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3714,726,766 - 14,727,833 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3715,602,312 - 15,652,657 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03714,660,932 - 14,697,573 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3714,662,132 - 14,663,199 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13714,615,161 - 14,663,584 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03714,587,439 - 14,637,542 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03714,583,735 - 14,634,083 (-)NCBIUU_Cfam_GSD_1.0
Cmklr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303162,909,682 - 162,948,591 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366312,545,241 - 2,546,308 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366312,544,951 - 2,580,306 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CMKLR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11091,947,418 - 91,994,064 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1091,948,260 - 91,949,327 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040107,383,101 - 107,431,473 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cmklr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247659,952,440 - 9,953,507 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247659,898,536 - 9,953,815 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CMKLR2
2661 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 7 4 3 5 15 2 2 1
Below cutoff 3 1 5 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000017562   ⟹   ENSSSCP00000017089
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15109,467,088 - 109,521,100 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000037267   ⟹   ENSSSCP00000034523
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15109,467,080 - 109,471,601 (-)Ensembl
RefSeq Acc Id: NM_001190244   ⟹   NP_001177173
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115109,467,080 - 109,471,601 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005672112   ⟹   XP_005672169
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115109,467,078 - 109,528,929 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005672113   ⟹   XP_005672170
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115109,467,078 - 109,516,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013984415   ⟹   XP_013839869
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115109,467,078 - 109,528,931 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021074585   ⟹   XP_020930244
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115109,467,078 - 109,470,887 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021074587   ⟹   XP_020930246
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115109,467,078 - 109,528,929 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021074588   ⟹   XP_020930247
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115109,467,078 - 109,490,173 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021074589   ⟹   XP_020930248
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115109,467,078 - 109,490,174 (-)NCBI
Sequence:
RefSeq Acc Id: XP_013839869   ⟸   XM_013984415
- Peptide Label: isoform X2
- UniProtKB: F1SHD4 (UniProtKB/TrEMBL),   A0A4X1UXN1 (UniProtKB/TrEMBL),   A0A481AIZ9 (UniProtKB/TrEMBL),   A0A8D1WU29 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020930246   ⟸   XM_021074587
- Peptide Label: isoform X2
- UniProtKB: A0A4X1UXN1 (UniProtKB/TrEMBL),   F1SHD4 (UniProtKB/TrEMBL),   A0A481AIZ9 (UniProtKB/TrEMBL),   A0A8D1WU29 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005672169   ⟸   XM_005672112
- Peptide Label: isoform X2
- UniProtKB: F1SHD4 (UniProtKB/TrEMBL),   A0A4X1UXN1 (UniProtKB/TrEMBL),   A0A481AIZ9 (UniProtKB/TrEMBL),   A0A8D1WU29 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005672170   ⟸   XM_005672113
- Peptide Label: isoform X2
- UniProtKB: F1SHD4 (UniProtKB/TrEMBL),   A0A4X1UXN1 (UniProtKB/TrEMBL),   A0A481AIZ9 (UniProtKB/TrEMBL),   A0A8D1WU29 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020930248   ⟸   XM_021074589
- Peptide Label: isoform X2
- UniProtKB: A0A4X1UXN1 (UniProtKB/TrEMBL),   F1SHD4 (UniProtKB/TrEMBL),   A0A481AIZ9 (UniProtKB/TrEMBL),   A0A8D1WU29 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020930247   ⟸   XM_021074588
- Peptide Label: isoform X2
- UniProtKB: A0A4X1UXN1 (UniProtKB/TrEMBL),   F1SHD4 (UniProtKB/TrEMBL),   A0A481AIZ9 (UniProtKB/TrEMBL),   A0A8D1WU29 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020930244   ⟸   XM_021074585
- Peptide Label: isoform X1
- UniProtKB: A0A481AIZ9 (UniProtKB/TrEMBL),   A0A8D1WU29 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001177173   ⟸   NM_001190244
- UniProtKB: A0A481AIZ9 (UniProtKB/TrEMBL),   A0A8D1WU29 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000017089   ⟸   ENSSSCT00000017562
RefSeq Acc Id: ENSSSCP00000034523   ⟸   ENSSSCT00000037267

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016129 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025069054 UniProtKB/TrEMBL
  ENSSSCG00035046560 UniProtKB/TrEMBL
  ENSSSCG00040051819 UniProtKB/TrEMBL
  ENSSSCG00045036588 UniProtKB/TrEMBL
  ENSSSCG00055022920 UniProtKB/TrEMBL
  ENSSSCG00060074727 UniProtKB/TrEMBL
  ENSSSCG00065051764 UniProtKB/TrEMBL
  ENSSSCG00070020995 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017562 ENTREZGENE
  ENSSSCT00000017562.5 UniProtKB/TrEMBL
  ENSSSCT00000037267 ENTREZGENE
  ENSSSCT00000037267.2 UniProtKB/TrEMBL
  ENSSSCT00025094878.1 UniProtKB/TrEMBL
  ENSSSCT00025094952.1 UniProtKB/TrEMBL
  ENSSSCT00035061916.1 UniProtKB/TrEMBL
  ENSSSCT00035061924.1 UniProtKB/TrEMBL
  ENSSSCT00040070007.1 UniProtKB/TrEMBL
  ENSSSCT00040070032.1 UniProtKB/TrEMBL
  ENSSSCT00045062982.1 UniProtKB/TrEMBL
  ENSSSCT00045063029.1 UniProtKB/TrEMBL
  ENSSSCT00055045035.1 UniProtKB/TrEMBL
  ENSSSCT00055045098.1 UniProtKB/TrEMBL
  ENSSSCT00060102245.1 UniProtKB/TrEMBL
  ENSSSCT00065070884.1 UniProtKB/TrEMBL
  ENSSSCT00065070893.1 UniProtKB/TrEMBL
  ENSSSCT00070041708.1 UniProtKB/TrEMBL
  ENSSSCT00070041712.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro Formyl_rcpt-rel UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  GPR1_orph_rcpt UniProtKB/TrEMBL
NCBI Gene GPR1 ENTREZGENE
PANTHER CHEMOTACTIC RECEPTOR UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  GPR1ORPHANR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A481AIZ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UXN1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WU29 ENTREZGENE, UniProtKB/TrEMBL
  F1SHD4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:96331 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-04-26 CMKLR2  chemerin chemokine-like receptor 2  GPR1  G protein-coupled receptor 1  Symbol and/or name change 19259463 PROVISIONAL