CYGB (cytoglobin) - Rat Genome Database

Name: CYGB
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: CYGB (cytoglobin) Sus scrofa

Analyze

Symbol:

CYGB

Name:

cytoglobin

RGD ID:

13937867

Description:

ENCODES a protein that exhibits carbon monoxide binding (ortholog); catalase activity (ortholog); fatty acid peroxidase activity (ortholog); INVOLVED IN fatty acid oxidation (ortholog); negative regulation of collagen biosynthetic process (ortholog); negative regulation of fibroblast migration (ortholog); ASSOCIATED WITH Chronic Pancreatitis (ortholog); Experimental Liver Cirrhosis (ortholog); extrahepatic cholestasis (ortholog); FOUND IN cytoplasm (ortholog); neuron projection (ortholog); neuronal cell body (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CYGB (cytoglobin)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Cygb (cytoglobin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cygb (cytoglobin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cygb (cytoglobin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CYGB (cytoglobin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CYGB (cytoglobin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cygb (cytoglobin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CYGB (cytoglobin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cygb (cytoglobin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	12	4,977,245 - 4,988,283 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	4,829,817 - 4,840,005 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chronic Pancreatitis (ISO)

Experimental Liver Cirrhosis (ISO)

extrahepatic cholestasis (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

Hepatic Insufficiency (ISO)

Hepatomegaly (ISO)

kidney disease (ISO)

liver cirrhosis (ISO)

Nervous System Heredodegenerative Disorders (ISO)

primary biliary cholangitis (ISO)

renal fibrosis (ISO)

retinitis pigmentosa (ISO)

retinitis pigmentosa 36 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

fatty acid oxidation (ISO)

negative regulation of collagen biosynthetic process (ISO)

negative regulation of fibroblast migration (ISO)

negative regulation of hepatic stellate cell activation (ISO)

nitric oxide catabolic process (ISO)

oxygen transport (IEA)

removal of superoxide radicals (ISO)

response to hypoxia (ISO)

response to oxidative stress (ISO)

Cellular Component

cytoplasm (ISO)

neuron projection (ISO)

neuronal cell body (ISO)

nucleus (ISO)

Molecular Function

carbon monoxide binding (ISO)

catalase activity (ISO)

fatty acid peroxidase activity (ISO)

heme binding (IEA,ISO)

iron ion binding (IEA)

metal ion binding (IEA)

nitric oxide dioxygenase activity, heme protein as donor (ISO)

nitrite reductase activity (ISO)

oxidoreductase activity (IEA)

oxygen binding (IEA)

oxygen carrier activity (IEA)

peroxidase activity (ISO)

protein binding (ISO)

superoxide dismutase activity (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CYGB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	12	4,977,245 - 4,988,283 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	4,829,817 - 4,840,005 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CYGB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	76,527,356 - 76,551,193 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	76,527,356 - 76,551,175 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	74,523,438 - 74,533,791 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	72,035,035 - 72,045,377 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	72,035,034 - 72,045,377	NCBI
Celera	17	71,115,779 - 71,126,119 (-)	NCBI		Celera
Cytogenetic Map	17	q25.1	NCBI
HuRef	17	69,951,063 - 69,961,627 (-)	NCBI		HuRef
CHM1_1	17	74,588,377 - 74,598,946 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	77,424,099 - 77,449,394 (-)	NCBI		T2T-CHM13v2.0

Cygb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	116,536,421 - 116,544,887 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	116,536,421 - 116,545,139 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	116,645,595 - 116,654,504 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	116,645,595 - 116,654,313 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	116,506,909 - 116,515,627 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	116,461,685 - 116,470,403 (-)	NCBI		MGSCv36	mm8
Celera	11	128,416,859 - 128,425,516 (-)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	81.45	NCBI

Cygb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	102,376,506 - 102,386,272 (-)	NCBI		GRCr8
mRatBN7.2	10	101,877,675 - 101,887,442 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	101,877,676 - 101,887,442 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	106,934,815 - 106,944,558 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	106,397,907 - 106,407,650 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	101,798,546 - 101,808,312 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	105,618,325 - 105,628,091 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	105,618,326 - 105,628,091 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	105,280,904 - 105,290,670 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	106,759,885 - 106,769,651 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	106,774,389 - 106,784,155 (-)	NCBI
Celera	10	100,448,536 - 100,458,302 (-)	NCBI		Celera
Cytogenetic Map	10	q32.2	NCBI

Cygb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	5,766,006 - 5,775,784 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955506	5,766,006 - 5,775,722 (+)	NCBI	ChiLan1.0	ChiLan1.0

CYGB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	92,570,565 - 92,601,134 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	97,395,777 - 97,406,085 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	70,475,651 - 70,485,987 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	76,167,003 - 76,178,247 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	76,167,947 - 76,179,412 (-)	Ensembl	panpan1.1		panPan2

CYGB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	4,191,114 - 4,201,438 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	4,184,959 - 4,200,164 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	4,872,569 - 4,881,413 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	4,867,061 - 4,877,257 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	4,867,055 - 4,875,983 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	4,892,392 - 4,901,203 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	5,012,299 - 5,021,092 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	5,093,431 - 5,102,251 (+)	NCBI		UU_Cfam_GSD_1.0

Cygb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	4,798,176 - 4,809,539 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	1,604,710 - 1,613,783 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936594	1,602,436 - 1,613,783 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CYGB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	45,140,130 - 45,151,068 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	45,140,284 - 45,151,082 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	15,877,603 - 15,891,518 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cygb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	6,384,213 - 6,395,979 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624801	6,385,771 - 6,395,705 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CYGB
234 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium						2
Low	10	4	3	5	2	21	2	2	1
Below cutoff								1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003131179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013989868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021066574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK350056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP009759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01090677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_003131179 ⟹ XP_003131227

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	4,978,068 - 4,988,283 (+)	NCBI

Sequence:

show sequence

GAAGGGTGCTCACACGCACACGCCCCGACACCGCCCGTCTGGGGAGCGGGGACCGGGGCCCCCA
GACCCGCACCCGCCGCGGCGCACTCCTGCGTGGCCAGCGCGGCCCTGCGCCGCGTGACCGCCCC
CTCCTGCCGAGACCCCCGGCCCCCTCGCCACGCCCACGCCCCAGCCCCACCCGGCGGTCCAACT
CCGCGGTGGCGAGGAGGGCGGGCGGGTGCCCGCCGCGTCGCCCCCACCCCGCCCAGCCTTCACC
TTGCCGGAACTGGCTCGCGGACGCGGGCTGGAGGGGTTGGAGCGGATTTATTTTTTTTCGCATT
TTTCCAGCAGACCACATCCCCGCCCCCCGCTCGCGGTCCCCCGCCCCCTGCACATATACCCTGC
ACAGACACACACACACAGACACACACACACACACACACACACACACACACACACACACAGAGCC
GGCGCGCACAGACACGCTCCCTCCCTCCGGCGCGCTCTGCCACTCGCCCGCCCGCCCGCCGCGC
ACGCAGCCGGCCCCGGCTCCCCGCGCTCCGCGCTCCGCGCCCCGCGCCCCGCCGCCGCCGAGCG
AAGCCGGGCTGGGCTTGGAGCTGCTCATGGAGAAAGTGCCGGGCGAGATGGAGATTGAGCGCAG
GGAGCGGAGCGAGGAGCTGTCCGAGGCGGAGAGGAAGGCGGTGCAGGCGACGTGGGCCCGGCTC
TATGCCAACTGCGAGGACGTGGGGGTGGCCATCCTGGTGAGGTTCTTTGTGAACTTCCCGTCGG
CCAAGCAGTACTTCAGCCAGTTCAAGCACATGGAGGATCCCCTGGAGATGGAGCGGAGCCCACA
GCTGCGGAAGCACGCCTGCCGGGTCATGGGGGCTCTCAACACCGTGGTGGAGAACCTGCACGAC
CCCGAGAAGGTGTCCTCTGTGCTCGCCCTCGTGGGCAAGGCCCACGCCCTCAAGCACAAGGTGG
AGCCCGTGTACTTCAAGATCCTCTCTGGGGTCATCCTGGAGGTGATCGCCGAGGAATTTGCCAA
CGACTTCCCACCCGAGACGCAGAGAGCCTGGGCCAAGCTTCGCAGCCTCATCTACAGCCACGTG
ACCGCTGCCTACAAAGAAGTGGGCTGGGTACAGCAGGTCCCCAACGCCACCACCCCCCCAGCCA
CGCTGCCCTCTTCGGGGCCGTAGGACCCTCTCTCTCCTCCCCCGTTCCTGGCAGCACCTTGAGC
AGAAGGCTGAGTTCTGAAGACCCTCCACCTCTGGGTGCCAAGGAAGCTGGAGGAATCCCTGACT
CGTCTTCCCGGAAAGACGCCACCTCCGCCTCGGCCACAGTCCCCCTGGAGCCGCCGGGAGGTGG
CTCTGGCTGCGGACCCCAGCTCGGGGGCGCGGCGGGTGGCCTGTGGGGGTGGGGGACCCTTCCT
CCTTGAAGAGCCGGGCACACCCTTCTTAGCTTTTCTACTCACTGTTAGAGACGCAGGCGAGCGG
CTGGCAGGAAGCAGGGACAGGTCTGTGAGTCACTCGAGGAACAGAGCAGCCCTGTTTCTCTCTG
CCTGGCCGCACGCAGGTCTCCATGTCACTTATCTAGAGCACCACGCACACACGTCTACCGTATA
TCGGATATATTCTATATACAATCTATATAAATCTCTCTATATATACACTGCATATCTATACTGT
GTATCAGTGGGGCCCAGGGGCACGTGTAAGGCCTCGTTCTGCCCACCGAGGGGTCCTGGCAGCT
TCTGGGCAGAGACCAGAGGGTTCTGGCAGAGATGGGAGGGGGGCTCCCACATCAGCCGAGAGGA
CCTGGGCAGGGTGGGAGGGACCCAGCTTGCGGGCTGAGCACAGCCCAGGGTTCTCTCTGACCAG
CTCCCCTCCTTCCTGCTTTTCCACTCCAGGCAAAAAGGATTTGGCTTTCCCTACCTCTGCCCCC
CACTAAAGGGCGTGGCTCCCTGACTTGCCCCCAAACAAGGGCAAGGGCAGACAGAGGGGGCCAG
AAGTTCTGGTTGCAGGATGACCGCCCAGGGGAGGGGCCAAGGTCAAGAAGCCTCAGAGGCCGCC
CGCTCCACCGCCTGTGTGGCTAAGACCGCCCGGCAGGAGGGGGTCCAGGCTGCGGTCAGAGGGG
CCTTCCCTCCCCGGCCCCTCCCGGCTGCCGGCCGGCGGTCGGTCCCGTCCATCCATCTGGCTGG
CGTTGCTGGGGAGCCCTCCACGTGTGCCCCCTGATCACGTGCATCTCCCTCCAGGATATTCTGC
TGCTGTGGCTACTGTGCCTGTGTCTCCCCTGTCCCCTCCTCGTGCAGCCATCTGTGTAACGGCC
TGTCCTCCTTTTGTAGTTTCTGATGTTTGTAACCAGACCCAGCCGTGTCATTAAACAGACTCGT
TCTTCCTGTG

hide sequence

RefSeq Acc Id:

XM_013989868 ⟹ XP_013845322

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	4,984,745 - 4,988,283 (+)	NCBI

Sequence:

show sequence

AGGCAGCCTCCCTGCCGCGTCCTGCCCGTCCCCTCGGCCCCTGACCTCCTACCTCTCCTGGCAC
CCAGGGGCTGACCCCCCGGGGCAGGAACACCTCCAGGAGGGTGGCTCCGGGCCCGACACAATTT
CAGAACAGGCACGATAGGAAAAGGCCCCACGCTCATTCTCCTCGGGGCAGAGCCATCCCCTTCC
CGAGAACCGGGGAGCCCTCAGGACACCCCGGGGACCGAGGCTGCCCGGGCAGGCAGGCTCGAGG
GTTCCCGGCAGGAAGGCGGGAAGCTGGCTCCTCAGGGCCGGAGGCAGCCCTGGCCAGCTCTGGC
CACTTCCTCCCTGGGTACCAACCACATGGGGCTGTTTTTCGTCTCGTGCTGATCAGCGCTCCCT
CCGCCTCGGCCTCCACCAGGCTGGAGCCAGGAGAATCACGAGGACACGTGCACGTGCCCCAGTG
CACTCGGGGCCCACGTGCGTGTCCCTCCCACGCACACCAGCCCCGGGGTTTACAGCAGGGCTCA
GGTTCCCAGTTCTGGGGCGCGGGCTCCAGGAGGGTGGCCGGCCTGGTGACTCCAGCTGACGCGG
AGCACGGGGGGAGGGCTGGCCCCCAGACGTGGCGGCTGGGAACACTCCGGCCTCCCGGGGCCCC
CAGGGGGCTGGGGCTCTGGGAGCTCAATGGAGGGGCGGAGGCAGGGCCGCAGGAAGGAGGAGGG
CGGAGGCGGGAATGGGAAGCAGGGGTCAGCCAGCGGCTCAGGACACGCGATGGAGAGAAACTTT
CCCAGCAGTTTCCCATGGAAAAGGCAGCGTCTCCTCCCGGGGCTCGAGCTGGCCCCGCGGAGCC
ACCGGACCTCCTGCGCGCAGGCATCCCCACGCCGCTCGGCAGAGGCGGTCCCCCGGGGGGCAGC
CTGGAGCGGCCAGGCCTCCCGACCTTCCTGCCGCTGACCACGCTGCCCCAGCTGGCTCCCGCTC
CCTTCCCGGTGACAGCACCTCCTCAAGAGAGAGAGAGCAGAGCCCCCGAGAAGTGCTGGCTCCA
GCCAGGCAGCTACTCCAGCTGTGCACAGCTGGCCGGGGCCTCCCCAGACCTCAGGGTGGACGGG
AGGCAGCCCCCCAGCCACGCTGCCCTCTTCGGGGCCGTAGGACCCTCTCTCTCCTCCCCCGTTC
CTGGCAGCACCTTGAGCAGAAGGCTGAGTTCTGAAGACCCTCCACCTCTGGGTGCCAAGGAAGC
TGGAGGAATCCCTGACTCGTCTTCCCGGAAAGACGCCACCTCCGCCTCGGCCACAGTCCCCCTG
GAGCCGCCGGGAGGTGGCTCTGGCTGCGGACCCCAGCTCGGGGGCGCGGCGGGTGGCCTGTGGG
GGTGGGGGACCCTTCCTCCTTGAAGAGCCGGGCACACCCTTCTTAGCTTTTCTACTCACTGTTA
GAGACGCAGGCGAGCGGCTGGCAGGAAGCAGGGACAGGTCTGTGAGTCACTCGAGGAACAGAGC
AGCCCTGTTTCTCTCTGCCTGGCCGCACGCAGGTCTCCATGTCACTTATCTAGAGCACCACGCA
CACACGTCTACCGTATATCGGATATATTCTATATACAATCTATATAAATCTCTCTATATATACA
CTGCATATCTATACTGTGTATCAGTGGGGCCCAGGGGCACGTGTAAGGCCTCGTTCTGCCCACC
GAGGGGTCCTGGCAGCTTCTGGGCAGAGACCAGAGGGTTCTGGCAGAGATGGGAGGGGGGCTCC
CACATCAGCCGAGAGGACCTGGGCAGGGTGGGAGGGACCCAGCTTGCGGGCTGAGCACAGCCCA
GGGTTCTCTCTGACCAGCTCCCCTCCTTCCTGCTTTTCCACTCCAGGCAAAAAGGATTTGGCTT
TCCCTACCTCTGCCCCCCACTAAAGGGCGTGGCTCCCTGACTTGCCCCCAAACAAGGGCAAGGG
CAGACAGAGGGGGCCAGAAGTTCTGGTTGCAGGATGACCGCCCAGGGGAGGGGCCAAGGTCAAG
AAGCCTCAGAGGCCGCCCGCTCCACCGCCTGTGTGGCTAAGACCGCCCGGCAGGAGGGGGTCCA
GGCTGCGGTCAGAGGGGCCTTCCCTCCCCGGCCCCTCCCGGCTGCCGGCCGGCGGTCGGTCCCG
TCCATCCATCTGGCTGGCGTTGCTGGGGAGCCCTCCACGTGTGCCCCCTGATCACGTGCATCTC
CCTCCAGGATATTCTGCTGCTGTGGCTACTGTGCCTGTGTCTCCCCTGTCCCCTCCTCGTGCAG
CCATCTGTGTAACGGCCTGTCCTCCTTTTGTAGTTTCTGATGTTTGTAACCAGACCCAGCCGTG
TCATTAAACAGACTCGTTCTTCCTGTG

hide sequence

RefSeq Acc Id:

XM_021066574 ⟹ XP_020922233

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	4,977,245 - 4,988,283 (+)	NCBI

Sequence:

show sequence

AGGAGCCACCACCTCTTGCACTACTGGAGCAGTGGACACAGAGCTGGAAAGGGCAGGATCACCA
GGGAGCCTTGGGGAGAACTGGACACACCCCGCATGCGTGGTCACGTGTTTCAGCCGCTTGCAGC
CGCCGCTGTGGGCCTCAGGCTTCAACTGGGACTCAGAGGTGGGACCCGGCCATACCGGGACTGA
GCAGCTGCTTGCAGGGTGGGGACTGGGTGGCTCTCAGAGACGCAGTCCCCACCTCTAGTCTAAT
GGTGGTCCCACCTCCCGGAGAAGAGCAATTCTGTGGTGGACACGGGATTCCATCCACAGAACCC
TTCCCTAATCGGGGCCTTGCTGGCTACGATGTCTCCAGCGGCCTGGGCCTCCCGAGACTTCTTC
ACACCGCTCCCCCCCAACCCAGGTTTGGGGTGCCTGGGACTTTGCTCCGCCTGGGCTGGTATTA
GGGGCCACTCGCCCCCTGCTTTGGGCCTGCCTGTGTCATTTACAAGCCACCCGGGGCCTTCTTT
CTGAGGCCACGTGCTGCTCCGAGGGGAAGGAGCGCTGGCGGGAAGGAAAGGGGGGGCGCAGGCC
TCTGGTGATCAAGTTTGACAGCCGCCCCCTCCTCATCCCCGCGGCGGTGTTTTCCTCTAGGGTT
CTTCCTCTAACCCCTCCGGAGTCTGGGGTCCGGAGCCCGGGCGAGAGCGCCGCGGACCCCAGCG
GCTGGCCCGGGAGAGGCCGGGAGCGAGGGGGAGCTCAGCTCGGGTCGCGGGCGGGCGGGCGGGC
GGCCACGCCGCAAATGCCTGGCAGTGTTTGACTTCGAGTCAGTTCCCCGCCGCGGGAAGGGTGC
TCACACGCACACGCCCCGACACCGCCCGTCTGGGGAGCGGGGACCGGGGCCCCCAGACCCGCAC
CCGCCGCGGCGCACTCCTGCGTGGCCAGCGCGGCCCTGCGCCGCGTGACCGCCCCCTCCTGCCG
AGACCCCCGGCCCCCTCGCCACGCCCACGCCCCAGCCCCACCCGGCGGTCCAACTCCGCGGTGG
CGAGGAGGGCGGGCGGGTGCCCGCCGCGTCGCCCCCACCCCGCCCAGCCTTCACCTTGCCGGAA
CTGGCTCGCGGACGCGGGCTGGAGGGGTTGGAGCGGATTTATTTTTTTTCGCATTTTTCCAGCA
GACCACATCCCCGCCCCCCGCTCGCGGTCCCCCGCCCCCTGCACATATACCCTGCACAGACACA
CACACACAGACACACACACACACACACACACACACACACACACACACACAGAGCCGGCGCGCAC
AGACACGCTCCCTCCCTCCGGCGCGCTCTGCCACTCGCCCGCCCGCCCGCCGCGCACGCAGCCG
GCCCCGGCTCCCCGCGCTCCGCGCTCCGCGCCCCGCGCCCCGCCGCCGCCGAGCGAAGCCGGGC
TGGGCTTGGAGCTGCTCATGGAGAAAGTGCCGGGCGAGATGGAGATTGAGCGCAGGGAGCGGAG
CGAGGAGCTGTCCGAGGCGGAGAGGAAGGCGGTGCAGGCGACGTGGGCCCGGCTCTATGCCAAC
TGCGAGGACGTGGGGGTGGCCATCCTGGTGAGGTTCTTTGTGAACTTCCCGTCGGCCAAGCAGT
ACTTCAGCCAGTTCAAGCACATGGAGGATCCCCTGGAGATGGAGCGGAGCCCACAGCTGCGGAA
GCACGCCTGCCGGGTCATGGGGGCTCTCAACACCGTGGTGGAGAACCTGCACGACCCCGAGAAG
GTGTCCTCTGTGCTCGCCCTCGTGGGCAAGGCCCACGCCCTCAAGCACAAGGTGGAGCCCGTGT
ACTTCAAGATCCTCTCTGGGGTCATCCTGGAGGTGATCGCCGAGGAATTTGCCAACGACTTCCC
ACCCGAGACGCAGAGAGCCTGGGCCAAGCTTCGCAGCCTCATCTACAGCCACGTGACCGCTGCC
TACAAAGAAGTGGGCTGGCCCCCCAGCCACGCTGCCCTCTTCGGGGCCGTAGGACCCTCTCTCT
CCTCCCCCGTTCCTGGCAGCACCTTGAGCAGAAGGCTGAGTTCTGAAGACCCTCCACCTCTGGG
TGCCAAGGAAGCTGGAGGAATCCCTGACTCGTCTTCCCGGAAAGACGCCACCTCCGCCTCGGCC
ACAGTCCCCCTGGAGCCGCCGGGAGGTGGCTCTGGCTGCGGACCCCAGCTCGGGGGCGCGGCGG
GTGGCCTGTGGGGGTGGGGGACCCTTCCTCCTTGAAGAGCCGGGCACACCCTTCTTAGCTTTTC
TACTCACTGTTAGAGACGCAGGCGAGCGGCTGGCAGGAAGCAGGGACAGGTCTGTGAGTCACTC
GAGGAACAGAGCAGCCCTGTTTCTCTCTGCCTGGCCGCACGCAGGTCTCCATGTCACTTATCTA
GAGCACCACGCACACACGTCTACCGTATATCGGATATATTCTATATACAATCTATATAAATCTC
TCTATATATACACTGCATATCTATACTGTGTATCAGTGGGGCCCAGGGGCACGTGTAAGGCCTC
GTTCTGCCCACCGAGGGGTCCTGGCAGCTTCTGGGCAGAGACCAGAGGGTTCTGGCAGAGATGG
GAGGGGGGCTCCCACATCAGCCGAGAGGACCTGGGCAGGGTGGGAGGGACCCAGCTTGCGGGCT
GAGCACAGCCCAGGGTTCTCTCTGACCAGCTCCCCTCCTTCCTGCTTTTCCACTCCAGGCAAAA
AGGATTTGGCTTTCCCTACCTCTGCCCCCCACTAAAGGGCGTGGCTCCCTGACTTGCCCCCAAA
CAAGGGCAAGGGCAGACAGAGGGGGCCAGAAGTTCTGGTTGCAGGATGACCGCCCAGGGGAGGG
GCCAAGGTCAAGAAGCCTCAGAGGCCGCCCGCTCCACCGCCTGTGTGGCTAAGACCGCCCGGCA
GGAGGGGGTCCAGGCTGCGGTCAGAGGGGCCTTCCCTCCCCGGCCCCTCCCGGCTGCCGGCCGG
CGGTCGGTCCCGTCCATCCATCTGGCTGGCGTTGCTGGGGAGCCCTCCACGTGTGCCCCCTGAT
CACGTGCATCTCCCTCCAGGATATTCTGCTGCTGTGGCTACTGTGCCTGTGTCTCCCCTGTCCC
CTCCTCGTGCAGCCATCTGTGTAACGGCCTGTCCTCCTTTTGTAGTTTCTGATGTTTGTAACCA
GACCCAGCCGTGTCATTAAACAGACTCGTTCTTCCTGTG

hide sequence

Protein Sequences


Protein RefSeqs	XP_003131227	(Get FASTA)	NCBI Sequence Viewer
	XP_013845322	(Get FASTA)	NCBI Sequence Viewer
	XP_020922233	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00025030388.1
	ENSSSCP00035031091.1
	ENSSSCP00040041942.1
	ENSSSCP00045043064.1
	ENSSSCP00055013261.1
	ENSSSCP00060039875.1
	ENSSSCP00065040004.1
	ENSSSCP00070033114.1

RefSeq Acc Id:	XP_020922233 ⟸ XM_021066574
- Peptide Label:	isoform X1
- UniProtKB:	A0A8D1J1T3 (UniProtKB/TrEMBL), A0A8D1WHN9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEKVPGEMEIERRERSEELSEAERKAVQATWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFK HMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPEKVSSVLALVGKAHALKHKVEPVYFKILS GVILEVIAEEFANDFPPETQRAWAKLRSLIYSHVTAAYKEVGWPPSHAALFGAVGPSLSSPVPG STLSRRLSSEDPPPLGAKEAGGIPDSSSRKDATSASATVPLEPPGGGSGCGPQLGGAAGGLWGW GTLPP hide sequence

RefSeq Acc Id:	XP_003131227 ⟸ XM_003131179
- Peptide Label:	isoform X2
- UniProtKB:	A0A4X1UXM8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEKVPGEMEIERRERSEELSEAERKAVQATWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFK HMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPEKVSSVLALVGKAHALKHKVEPVYFKILS GVILEVIAEEFANDFPPETQRAWAKLRSLIYSHVTAAYKEVGWVQQVPNATTPPATLPSSGP hide sequence

RefSeq Acc Id:	XP_013845322 ⟸ XM_013989868
- Peptide Label:	isoform X3
- Sequence:	show sequence MEKAASPPGARAGPAEPPDLLRAGIPTPLGRGGPPGGSLERPGLPTFLPLTTLPQLAPAPFPVT APPQERESRAPEKCWLQPGSYSSCAQLAGASPDLRVDGRQPPSHAALFGAVGPSLSSPVPGSTL SRRLSSEDPPPLGAKEAGGIPDSSSRKDATSASATVPLEPPGGGSGCGPQLGGAAGGLWGWGTL PP hide sequence

Protein Domains

Globin family profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00025051464	UniProtKB/TrEMBL
	ENSSSCG00035056961	UniProtKB/TrEMBL
	ENSSSCG00040069291	UniProtKB/TrEMBL
	ENSSSCG00045035719	UniProtKB/TrEMBL
	ENSSSCG00055008595	UniProtKB/TrEMBL
	ENSSSCG00060067621	UniProtKB/TrEMBL
	ENSSSCG00065066541	UniProtKB/TrEMBL
	ENSSSCG00070019934	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00025070391.1	UniProtKB/TrEMBL
	ENSSSCT00035076157.1	UniProtKB/TrEMBL
	ENSSSCT00040094833.1	UniProtKB/TrEMBL
	ENSSSCT00045061300.1	UniProtKB/TrEMBL
	ENSSSCT00055016805.1	UniProtKB/TrEMBL
	ENSSSCT00060092268.1	UniProtKB/TrEMBL
	ENSSSCT00065091346.1	UniProtKB/TrEMBL
	ENSSSCT00070039534.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.490.10	UniProtKB/TrEMBL
InterPro	Globin	UniProtKB/TrEMBL
	Globin-like_sf	UniProtKB/TrEMBL
	Globin/Proto	UniProtKB/TrEMBL
	Globin_lamprey/hagfish	UniProtKB/TrEMBL
KEGG Report	ssc:100518861	UniProtKB/TrEMBL
NCBI Gene	CYGB	ENTREZGENE
PANTHER	CYTOGLOBIN	UniProtKB/TrEMBL
	PTHR46783	UniProtKB/TrEMBL
Pfam	Globin	UniProtKB/TrEMBL
PRINTS	FISHGLOBIN	UniProtKB/TrEMBL
PROSITE	GLOBIN	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46458	UniProtKB/TrEMBL
UniProt	A0A4X1UXM8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1J1T3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1WHN9	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:87128	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD