TDH (L-threonine 3-dehydrogenase) - Rat Genome Database
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Gene: TDH (L-threonine 3-dehydrogenase) Sus scrofa
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Symbol: TDH
Name: L-threonine 3-dehydrogenase
RGD ID: 13937475
Description: ENCODES a protein that exhibits identical protein binding (ortholog); L-threonine 3-dehydrogenase activity (ortholog); INVOLVED IN threonine catabolic process (ortholog); FOUND IN mitochondrion (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: L-threonine 3-dehydrogenase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11414,577,009 - 14,597,695 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:12097150   PMID:14681463  


Genomics

Comparative Map Data
TDH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11414,577,009 - 14,597,695 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TDH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl811,339,637 - 11,368,452 (+)EnsemblGRCh38hg38GRCh38
GRCh38811,339,637 - 11,368,452 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37811,197,146 - 11,225,961 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36811,234,556 - 11,263,371 (+)NCBINCBI36hg18NCBI36
Celera810,325,172 - 10,353,989 (+)NCBI
Cytogenetic Map8p23.1NCBI
HuRef810,127,309 - 10,156,094 (+)NCBIHuRef
CHM1_1811,262,440 - 11,291,368 (+)NCBICHM1_1
Tdh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391463,729,796 - 63,746,541 (-)NCBIGRCm39mm39
GRCm381463,492,347 - 63,509,092 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1463,492,347 - 63,509,092 (-)EnsemblGRCm38mm10GRCm38
MGSCv371464,111,184 - 64,127,929 (-)NCBIGRCm37mm9NCBIm37
MGSCv361462,446,457 - 62,463,202 (-)NCBImm8
Celera1461,261,977 - 61,278,715 (-)NCBICelera
Cytogenetic Map14D1NCBI
Tdh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21537,739,823 - 37,753,365 (-)NCBI
Rnor_6.0 Ensembl1546,667,926 - 46,681,467 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01546,667,926 - 46,682,752 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01550,429,955 - 50,443,496 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41542,758,308 - 42,771,849 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11542,774,121 - 42,787,473 (-)NCBI
Celera1537,422,646 - 37,436,207 (-)NCBICelera
Cytogenetic Map15p12NCBI
LOC477365
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12526,541,717 - 26,560,366 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system nervous system
High
Medium
Low 3 12
Below cutoff 1 7

Sequence


Reference Sequences
RefSeq Acc Id: NM_214004   ⟹   NP_999169
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11414,585,838 - 14,595,322 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005658621   ⟹   XP_005658678
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11414,585,560 - 14,597,695 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021072090   ⟹   XP_020927749
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11414,577,045 - 14,597,695 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021072091   ⟹   XP_020927750
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11414,585,114 - 14,595,688 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021072092   ⟹   XP_020927751
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11414,577,009 - 14,595,688 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021072093   ⟹   XP_020927752
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11414,585,671 - 14,595,688 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020927751   ⟸   XM_021072092
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020927749   ⟸   XM_021072090
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020927750   ⟸   XM_021072091
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005658678   ⟸   XM_005658621
- Peptide Label: isoform X1
- UniProtKB: Q8MIR0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_020927752   ⟸   XM_021072093
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_999169   ⟸   NM_214004
- Peptide Label: precursor
- UniProtKB: Q8MIR0 (UniProtKB/Swiss-Prot)
- Sequence:
Protein Domains
Epimerase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021767 ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00015026648 UniProtKB/Swiss-Prot
  ENSSSCG00030001111 UniProtKB/Swiss-Prot
  ENSSSCG00040053878 UniProtKB/Swiss-Prot
  ENSSSCG00045019984 UniProtKB/Swiss-Prot
  ENSSSCG00050009861 UniProtKB/Swiss-Prot
  ENSSSCG00060065355 UniProtKB/Swiss-Prot
Ensembl Protein ENSSSCP00000028187 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCP00000036944 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00015014081 UniProtKB/Swiss-Prot
  ENSSSCP00030000654 UniProtKB/Swiss-Prot
  ENSSSCP00040031158 UniProtKB/Swiss-Prot
  ENSSSCP00045023642 UniProtKB/Swiss-Prot
  ENSSSCP00050005490 UniProtKB/Swiss-Prot
  ENSSSCP00060038629 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000022297 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCT00000061419 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00015035385 UniProtKB/Swiss-Prot
  ENSSSCT00030001476 UniProtKB/Swiss-Prot
  ENSSSCT00040072875 UniProtKB/Swiss-Prot
  ENSSSCT00045034071 UniProtKB/Swiss-Prot
  ENSSSCT00050013278 UniProtKB/Swiss-Prot
  ENSSSCT00060089223 UniProtKB/Swiss-Prot
InterPro Epimerase_deHydtase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:397065 UniProtKB/Swiss-Prot
NCBI Gene TDH ENTREZGENE
Pfam Epimerase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A5S6HAC8_PIG UniProtKB/TrEMBL
  Q8MIR0 ENTREZGENE, UniProtKB/Swiss-Prot