FBXO5 (F-box protein 5) - Rat Genome Database

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Gene: FBXO5 (F-box protein 5) Sus scrofa
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Symbol: FBXO5
Name: F-box protein 5
RGD ID: 13937150
Description: ENCODES a protein that exhibits anaphase-promoting complex binding (inferred); metal ion binding (inferred); molecular function inhibitor activity (inferred); INVOLVED IN microtubule polymerization (ortholog); negative regulation of meiotic nuclear division (ortholog); oocyte maturation (ortholog); ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 8 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); meiotic spindle (inferred); nucleoplasm (inferred); INTERACTS WITH resveratrol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: F-box only protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl113,467,501 - 13,505,928 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1113,466,961 - 13,478,496 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2115,716,714 - 15,728,617 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
resveratrol  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
meiotic spindle  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)
spindle  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
FBXO5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl113,467,501 - 13,505,928 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1113,466,961 - 13,478,496 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2115,716,714 - 15,728,617 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FBXO5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386152,970,535 - 152,983,579 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl6152,970,519 - 152,983,579 (-)EnsemblGRCh38hg38GRCh38
GRCh376153,291,670 - 153,304,714 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366153,333,351 - 153,345,867 (-)NCBINCBI36Build 36hg18NCBI36
Build 346153,383,773 - 153,396,288NCBI
Celera6154,025,328 - 154,038,410 (-)NCBICelera
Cytogenetic Map6q25.2NCBI
HuRef6150,854,447 - 150,867,531 (-)NCBIHuRef
CHM1_16153,555,576 - 153,568,660 (-)NCBICHM1_1
T2T-CHM13v2.06154,171,829 - 154,184,878 (-)NCBIT2T-CHM13v2.0
Fbxo5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39105,749,155 - 5,755,465 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl105,749,160 - 5,755,600 (-)EnsemblGRCm39 Ensembl
GRCm38105,799,158 - 5,805,465 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl105,799,160 - 5,805,600 (-)EnsemblGRCm38mm10GRCm38
MGSCv37104,541,076 - 4,547,383 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36104,541,076 - 4,546,998 (+)NCBIMGSCv36mm8
Celera105,733,112 - 5,739,409 (-)NCBICelera
Cytogenetic Map10A1NCBI
Fbxo5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2142,196,068 - 42,202,437 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl142,196,068 - 42,202,437 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx142,738,271 - 42,744,646 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0148,725,464 - 48,731,839 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0142,813,736 - 42,820,111 (-)NCBIRnor_WKY
Rnor_6.0142,461,277 - 42,467,646 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,461,291 - 42,467,586 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0143,791,187 - 43,797,556 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4136,492,134 - 36,498,503 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1136,495,551 - 36,501,323 (-)NCBI
Celera137,863,352 - 37,869,721 (-)NCBICelera
Cytogenetic Map1q11NCBI
Fbxo5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554398,830,975 - 8,843,828 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554398,830,658 - 8,843,653 (+)NCBIChiLan1.0ChiLan1.0
FBXO5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan16170,892,462 - 170,905,617 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06150,793,020 - 150,806,008 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16155,481,767 - 155,494,689 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6155,481,753 - 155,494,231 (-)Ensemblpanpan1.1panPan2
FBXO5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1143,138,338 - 43,149,546 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl143,138,889 - 43,149,297 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha143,975,851 - 43,987,186 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0143,321,686 - 43,333,047 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl143,322,263 - 43,332,336 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1143,189,124 - 43,200,485 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0143,052,605 - 43,063,915 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0143,540,287 - 43,551,650 (-)NCBIUU_Cfam_GSD_1.0
Fbxo5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946138,337,977 - 138,349,305 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364895,589,538 - 5,600,539 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049364895,589,621 - 5,602,221 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11380,453,345 - 80,467,590 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1380,453,355 - 80,466,778 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604052,778,853 - 52,792,908 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxo5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247855,247,731 - 5,260,736 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247855,248,434 - 5,260,623 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 2 5 2 3
Below cutoff 1 1 3 2 23 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000004506   ⟹   ENSSSCP00000004404
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl113,467,501 - 13,481,775 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000061652   ⟹   ENSSSCP00000046778
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl113,467,501 - 13,478,496 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000071576   ⟹   ENSSSCP00000062135
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl113,467,501 - 13,505,928 (+)Ensembl
RefSeq Acc Id: XM_003121138   ⟹   XP_003121186
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1113,466,961 - 13,478,491 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013992479   ⟹   XP_013847933
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1113,466,971 - 13,478,491 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013992480   ⟹   XP_013847934
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1113,466,971 - 13,478,491 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013992481   ⟹   XP_013847935
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1113,466,971 - 13,478,496 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003121186 (Get FASTA)   NCBI Sequence Viewer  
  XP_013847933 (Get FASTA)   NCBI Sequence Viewer  
  XP_013847934 (Get FASTA)   NCBI Sequence Viewer  
  XP_013847935 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003121186   ⟸   XM_003121138
- Peptide Label: isoform X1
- UniProtKB: F1S7X4 (UniProtKB/TrEMBL),   A0A8D1IR02 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013847935   ⟸   XM_013992481
- Peptide Label: isoform X4
- UniProtKB: A0A287ARR5 (UniProtKB/TrEMBL),   A0A8D1EB62 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013847934   ⟸   XM_013992480
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013847933   ⟸   XM_013992479
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000046778   ⟸   ENSSSCT00000061652
RefSeq Acc Id: ENSSSCP00000062135   ⟸   ENSSSCT00000071576
RefSeq Acc Id: ENSSSCP00000004404   ⟸   ENSSSCT00000004506
Protein Domains
F-box   ZBR-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004077 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025004679 UniProtKB/TrEMBL
  ENSSSCG00030062506 UniProtKB/TrEMBL
  ENSSSCG00035012231 UniProtKB/TrEMBL
  ENSSSCG00040032521 UniProtKB/TrEMBL
  ENSSSCG00045031950 UniProtKB/TrEMBL
  ENSSSCG00050075357 UniProtKB/TrEMBL
  ENSSSCG00055014508 UniProtKB/TrEMBL
  ENSSSCG00065053715 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000046778 ENTREZGENE
  ENSSSCP00000046778.1 UniProtKB/TrEMBL
  ENSSSCP00000062135 ENTREZGENE
  ENSSSCP00000062135.2 UniProtKB/TrEMBL
  ENSSSCP00025002669.1 UniProtKB/TrEMBL
  ENSSSCP00025002678.1 UniProtKB/TrEMBL
  ENSSSCP00030040381.1 UniProtKB/TrEMBL
  ENSSSCP00030040389.1 UniProtKB/TrEMBL
  ENSSSCP00030040391.1 UniProtKB/TrEMBL
  ENSSSCP00035005258.1 UniProtKB/TrEMBL
  ENSSSCP00035005261.1 UniProtKB/TrEMBL
  ENSSSCP00040018386.1 UniProtKB/TrEMBL
  ENSSSCP00040018399.1 UniProtKB/TrEMBL
  ENSSSCP00040018420.1 UniProtKB/TrEMBL
  ENSSSCP00045038014.1 UniProtKB/TrEMBL
  ENSSSCP00045038062.1 UniProtKB/TrEMBL
  ENSSSCP00045038152.1 UniProtKB/TrEMBL
  ENSSSCP00045038207.1 UniProtKB/TrEMBL
  ENSSSCP00050045144.1 UniProtKB/TrEMBL
  ENSSSCP00050045146.1 UniProtKB/TrEMBL
  ENSSSCP00055022854.1 UniProtKB/TrEMBL
  ENSSSCP00055022893.1 UniProtKB/TrEMBL
  ENSSSCP00065032013.1 UniProtKB/TrEMBL
  ENSSSCP00065032014.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000061652 ENTREZGENE
  ENSSSCT00000061652.2 UniProtKB/TrEMBL
  ENSSSCT00000071576 ENTREZGENE
  ENSSSCT00000071576.2 UniProtKB/TrEMBL
  ENSSSCT00025006426.1 UniProtKB/TrEMBL
  ENSSSCT00025006441.1 UniProtKB/TrEMBL
  ENSSSCT00030087440.1 UniProtKB/TrEMBL
  ENSSSCT00030087453.1 UniProtKB/TrEMBL
  ENSSSCT00030087461.1 UniProtKB/TrEMBL
  ENSSSCT00035015397.1 UniProtKB/TrEMBL
  ENSSSCT00035015400.1 UniProtKB/TrEMBL
  ENSSSCT00040043804.1 UniProtKB/TrEMBL
  ENSSSCT00040043833.1 UniProtKB/TrEMBL
  ENSSSCT00040043878.1 UniProtKB/TrEMBL
  ENSSSCT00045054579.1 UniProtKB/TrEMBL
  ENSSSCT00045054644.1 UniProtKB/TrEMBL
  ENSSSCT00045054755.1 UniProtKB/TrEMBL
  ENSSSCT00045054829.1 UniProtKB/TrEMBL
  ENSSSCT00050103301.1 UniProtKB/TrEMBL
  ENSSSCT00050103303.1 UniProtKB/TrEMBL
  ENSSSCT00055028682.1 UniProtKB/TrEMBL
  ENSSSCT00055028728.1 UniProtKB/TrEMBL
  ENSSSCT00065073552.1 UniProtKB/TrEMBL
  ENSSSCT00065073554.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
  2.20.25.20 UniProtKB/TrEMBL
InterPro F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  FBX5_43 UniProtKB/TrEMBL
  ZF_ZBR UniProtKB/TrEMBL
KEGG Report ssc:100514379 UniProtKB/TrEMBL
NCBI Gene FBXO5 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 5 UniProtKB/TrEMBL
  F-BOX ONLY PROTEIN 5 AND 43 UniProtKB/TrEMBL
Pfam F-box UniProtKB/TrEMBL
PROSITE ZF_ZBR UniProtKB/TrEMBL
Superfamily-SCOP SSF81383 UniProtKB/TrEMBL
UniProt A0A287ARR5 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QJC8_PIG UniProtKB/TrEMBL
  A0A8D0XPZ2_PIG UniProtKB/TrEMBL
  A0A8D0XS91_PIG UniProtKB/TrEMBL
  A0A8D1EB62 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1IPS8_PIG UniProtKB/TrEMBL
  A0A8D1IR02 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NZ64_PIG UniProtKB/TrEMBL
  A0A8D1QPL3_PIG UniProtKB/TrEMBL
  F1S7X4 ENTREZGENE
VGNC ID VGNC:88052 ENTREZGENE