PRX (periaxin) - Rat Genome Database

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Gene: PRX (periaxin) Sus scrofa
Analyze
Symbol: PRX
Name: periaxin
RGD ID: 13937029
Description: INVOLVED IN axon ensheathment (ortholog); nerve development (ortholog); peripheral nervous system myelin formation (ortholog); ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); cataract (ortholog); Charcot-Marie-Tooth disease (ortholog); FOUND IN cytosol (ortholog); nuclear speck (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,675,418 - 48,685,851 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1648,675,230 - 48,691,760 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2644,422,864 - 44,434,236 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PRX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,675,418 - 48,685,851 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1648,675,230 - 48,691,760 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2644,422,864 - 44,434,236 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381940,393,764 - 40,414,789 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1940,393,766 - 40,414,793 (-)EnsemblGRCh38hg38GRCh38
GRCh371940,899,671 - 40,919,285 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361945,591,511 - 45,611,111 (-)NCBINCBI36Build 36hg18NCBI36
Build 341945,591,514 - 45,611,111NCBI
Celera1937,699,214 - 37,718,819 (-)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1937,335,252 - 37,354,296 (-)NCBIHuRef
CHM1_11940,899,344 - 40,918,924 (-)NCBICHM1_1
T2T-CHM13v2.01943,214,390 - 43,235,423 (-)NCBIT2T-CHM13v2.0
Prx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39727,198,730 - 27,219,466 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl727,196,813 - 27,219,639 (+)EnsemblGRCm39 Ensembl
GRCm38727,499,305 - 27,520,041 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl727,497,388 - 27,520,214 (+)EnsemblGRCm38mm10GRCm38
MGSCv37728,284,343 - 28,305,060 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36727,208,084 - 27,228,974 (+)NCBIMGSCv36mm8
Celera722,081,698 - 22,102,493 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map715.91NCBI
Prx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8191,912,669 - 91,934,754 (+)NCBIGRCr8
mRatBN7.2182,785,082 - 82,807,154 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl182,786,815 - 82,807,407 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx188,189,694 - 88,210,039 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0196,676,781 - 96,697,259 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0189,945,557 - 89,965,902 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0184,302,074 - 84,324,560 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl184,304,228 - 84,324,560 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0185,519,732 - 85,541,381 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4182,577,850 - 82,598,184 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1182,655,960 - 82,676,295 (+)NCBI
Celera177,201,508 - 77,221,825 (+)NCBICelera
Cytogenetic Map1q21NCBI
Prx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955578868,534 - 874,168 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955578852,789 - 873,319 (+)NCBIChiLan1.0ChiLan1.0
PRX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22046,656,847 - 46,676,387 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11948,527,511 - 48,547,054 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01937,442,299 - 37,461,844 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11945,952,420 - 45,971,987 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1945,952,420 - 45,971,987 (-)Ensemblpanpan1.1panPan2
PRX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11113,279,940 - 113,294,042 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1112,681,885 - 112,695,982 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01113,878,300 - 113,892,405 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,877,985 - 113,892,401 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11113,437,602 - 113,451,668 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01113,070,068 - 113,084,170 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01114,064,062 - 114,078,156 (+)NCBIUU_Cfam_GSD_1.0
Prx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934914,344,377 - 14,358,524 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366612,772,621 - 2,787,647 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366612,772,446 - 2,783,120 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1634,851,977 - 34,870,413 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl634,851,979 - 34,864,967 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607312,947,541 - 12,966,190 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624925393,285 - 407,817 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PRX
215 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 5 3 3 5 2 5 2 3 1
Below cutoff 5 1 16 2

Sequence


RefSeq Acc Id: ENSSSCT00000036911   ⟹   ENSSSCP00000047717
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl648,675,418 - 48,683,676 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000049890   ⟹   ENSSSCP00000053312
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl648,675,231 - 48,686,044 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000105443   ⟹   ENSSSCP00000078193
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl648,678,743 - 48,685,851 (-)Ensembl
RefSeq Acc Id: XM_003355926   ⟹   XP_003355974
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1648,675,230 - 48,691,760 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003355974   ⟸   XM_003355926
- UniProtKB: A0A8D1QDR6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000053312   ⟸   ENSSSCT00000049890
RefSeq Acc Id: ENSSSCP00000047717   ⟸   ENSSSCT00000036911
RefSeq Acc Id: ENSSSCP00000078193   ⟸   ENSSSCT00000105443
Protein Domains
PDZ


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038439 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00005043862 UniProtKB/TrEMBL
  ENSSSCG00025035339 UniProtKB/TrEMBL
  ENSSSCG00030070278 UniProtKB/TrEMBL
  ENSSSCG00035003846 UniProtKB/TrEMBL
  ENSSSCG00045027436 UniProtKB/TrEMBL
  ENSSSCG00055010308 UniProtKB/TrEMBL
  ENSSSCG00060002016 UniProtKB/TrEMBL
  ENSSSCG00070003061 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000036911.2 UniProtKB/TrEMBL
  ENSSSCT00000105443.1 UniProtKB/TrEMBL
  ENSSSCT00005070438.1 UniProtKB/TrEMBL
  ENSSSCT00005070487.1 UniProtKB/TrEMBL
  ENSSSCT00005070539.1 UniProtKB/TrEMBL
  ENSSSCT00005070619.1 UniProtKB/TrEMBL
  ENSSSCT00005070648.1 UniProtKB/TrEMBL
  ENSSSCT00025048227.1 UniProtKB/TrEMBL
  ENSSSCT00025048261.1 UniProtKB/TrEMBL
  ENSSSCT00025048311.1 UniProtKB/TrEMBL
  ENSSSCT00025048345.1 UniProtKB/TrEMBL
  ENSSSCT00025048394.1 UniProtKB/TrEMBL
  ENSSSCT00030098287.1 UniProtKB/TrEMBL
  ENSSSCT00030098307.1 UniProtKB/TrEMBL
  ENSSSCT00030098330.1 UniProtKB/TrEMBL
  ENSSSCT00030098344.1 UniProtKB/TrEMBL
  ENSSSCT00030098363.1 UniProtKB/TrEMBL
  ENSSSCT00035004790.1 UniProtKB/TrEMBL
  ENSSSCT00035004791.1 UniProtKB/TrEMBL
  ENSSSCT00035004793.1 UniProtKB/TrEMBL
  ENSSSCT00035004795.1 UniProtKB/TrEMBL
  ENSSSCT00035004798.1 UniProtKB/TrEMBL
  ENSSSCT00045046778.1 UniProtKB/TrEMBL
  ENSSSCT00045046850.1 UniProtKB/TrEMBL
  ENSSSCT00045046925.1 UniProtKB/TrEMBL
  ENSSSCT00045046978.1 UniProtKB/TrEMBL
  ENSSSCT00045047040.1 UniProtKB/TrEMBL
  ENSSSCT00055020159.1 UniProtKB/TrEMBL
  ENSSSCT00055020179.1 UniProtKB/TrEMBL
  ENSSSCT00055020196.1 UniProtKB/TrEMBL
  ENSSSCT00055020215.1 UniProtKB/TrEMBL
  ENSSSCT00055020241.1 UniProtKB/TrEMBL
  ENSSSCT00060002452.1 UniProtKB/TrEMBL
  ENSSSCT00060002457.1 UniProtKB/TrEMBL
  ENSSSCT00060002461.1 UniProtKB/TrEMBL
  ENSSSCT00060002462.1 UniProtKB/TrEMBL
  ENSSSCT00060002466.1 UniProtKB/TrEMBL
  ENSSSCT00070005749.1 UniProtKB/TrEMBL
  ENSSSCT00070005753.1 UniProtKB/TrEMBL
  ENSSSCT00070005765.1 UniProtKB/TrEMBL
  ENSSSCT00070005772.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
InterPro PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
NCBI Gene PRX ENTREZGENE
PANTHER PERIAXIN UniProtKB/TrEMBL
  PERIAXIN/AHNAK UniProtKB/TrEMBL
Pfam PDZ UniProtKB/TrEMBL
PROSITE PDZ UniProtKB/TrEMBL
SMART PDZ UniProtKB/TrEMBL
Superfamily-SCOP SSF50156 UniProtKB/TrEMBL
UniProt A0A287AUV6_PIG UniProtKB/TrEMBL
  A0A287BB30_PIG UniProtKB/TrEMBL
  A0A480J0K5_PIG UniProtKB/TrEMBL
  A0A4X1SPU6_PIG UniProtKB/TrEMBL
  A0A4X1SPV8_PIG UniProtKB/TrEMBL
  A0A4X1SRF1_PIG UniProtKB/TrEMBL
  A0A8D0M2C0_PIG UniProtKB/TrEMBL
  A0A8D0M2N4_PIG UniProtKB/TrEMBL
  A0A8D0M2R3_PIG UniProtKB/TrEMBL
  A0A8D0M2W6_PIG UniProtKB/TrEMBL
  A0A8D0UQ50_PIG UniProtKB/TrEMBL
  A0A8D0Y2A0_PIG UniProtKB/TrEMBL
  A0A8D0Y2Y6_PIG UniProtKB/TrEMBL
  A0A8D0Y5I5_PIG UniProtKB/TrEMBL
  A0A8D0Y634_PIG UniProtKB/TrEMBL
  A0A8D0YD62_PIG UniProtKB/TrEMBL
  A0A8D0YF23_PIG UniProtKB/TrEMBL
  A0A8D0YFG0_PIG UniProtKB/TrEMBL
  A0A8D1ICW9_PIG UniProtKB/TrEMBL
  A0A8D1Q455_PIG UniProtKB/TrEMBL
  A0A8D1Q515_PIG UniProtKB/TrEMBL
  A0A8D1Q886_PIG UniProtKB/TrEMBL
  A0A8D1Q964_PIG UniProtKB/TrEMBL
  A0A8D1QDR6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1SLD3_PIG UniProtKB/TrEMBL
UniProt Secondary A0A8D0M293 UniProtKB/TrEMBL
VGNC ID VGNC:91891 ENTREZGENE