PLPPR5 (phospholipid phosphatase related 5) - Rat Genome Database

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Gene: PLPPR5 (phospholipid phosphatase related 5) Sus scrofa
Analyze
Symbol: PLPPR5
Name: phospholipid phosphatase related 5
RGD ID: 13936579
Description: ENCODES a protein that exhibits phosphatidate phosphatase activity (inferred); INVOLVED IN positive regulation of filopodium assembly (ortholog); positive regulation of neuron projection development (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: lipid phosphate phosphatase-related protein type 5; LPPR5; phospholipid phosphatase-related protein type 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4118,947,440 - 119,065,184 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14118,600,361 - 119,065,669 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24130,548,600 - 130,666,258 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
PLPPR5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4118,947,440 - 119,065,184 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14118,600,361 - 119,065,669 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24130,548,600 - 130,666,258 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLPPR5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38198,890,245 - 99,005,786 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl198,890,245 - 99,227,929 (-)EnsemblGRCh38hg38GRCh38
GRCh37199,355,801 - 99,470,417 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36199,128,389 - 99,243,037 (-)NCBINCBI36Build 36hg18NCBI36
Celera197,609,711 - 97,724,382 (-)NCBICelera
Cytogenetic Map1p21.3NCBI
HuRef197,478,911 - 97,593,593 (-)NCBIHuRef
CHM1_1199,471,965 - 99,586,821 (-)NCBICHM1_1
T2T-CHM13v2.0198,738,338 - 98,856,692 (-)NCBIT2T-CHM13v2.0
Plppr5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393117,368,274 - 117,483,157 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3117,278,733 - 117,483,156 (+)EnsemblGRCm39 Ensembl
GRCm383117,574,608 - 117,689,508 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3117,485,084 - 117,689,507 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl3117,574,836 - 117,689,507 (+)EnsemblGRCm38mm10GRCm38
MGSCv373117,278,379 - 117,392,424 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363117,567,604 - 117,681,484 (+)NCBIMGSCv36mm8
Celera3123,988,384 - 124,102,194 (+)NCBICelera
Cytogenetic Map3G1NCBI
cM Map351.21NCBI
Plppr5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82208,143,058 - 208,422,836 (+)NCBIGRCr8
mRatBN7.22205,525,466 - 205,737,892 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2205,458,176 - 205,717,599 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2213,261,966 - 213,372,801 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02211,174,691 - 211,280,207 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02205,995,017 - 206,105,847 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02219,895,141 - 220,102,333 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2219,896,765 - 220,101,791 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02237,965,738 - 238,028,143 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02238,156,053 - 238,169,325 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42213,925,783 - 214,036,361 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12213,889,370 - 213,998,511 (+)NCBI
Celera2198,085,140 - 198,195,375 (+)NCBICelera
Cytogenetic Map2q42NCBI
Plppr5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554353,699,744 - 3,773,286 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554353,700,217 - 3,818,532 (-)NCBIChiLan1.0ChiLan1.0
PLPPR5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21128,024,674 - 128,136,435 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11127,179,285 - 127,291,002 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01101,547,329 - 101,661,187 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11100,268,826 - 100,382,272 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1100,268,826 - 100,385,980 (-)Ensemblpanpan1.1panPan2
PLPPR5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1650,823,227 - 50,931,525 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl650,754,798 - 50,929,224 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha653,489,185 - 53,615,405 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0651,159,734 - 51,284,974 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl651,160,811 - 51,284,959 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1650,852,156 - 50,976,186 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0650,831,450 - 50,957,167 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0651,265,386 - 51,389,370 (+)NCBIUU_Cfam_GSD_1.0
Plppr5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058108,115,914 - 108,224,980 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936537723,386 - 832,067 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936537723,390 - 829,991 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLPPR5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12034,079,224 - 34,419,122 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2034,302,819 - 34,419,051 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660351,889,870 - 2,007,662 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plppr5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248571,558,182 - 1,671,110 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248571,558,305 - 1,671,577 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PLPPR5
22808 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 13
Low 2 2 2 10 3 1
Below cutoff 7 3 5 1 2

Sequence


RefSeq Acc Id: ENSSSCT00000007530   ⟹   ENSSSCP00000007331
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4118,948,040 - 119,065,184 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000041130   ⟹   ENSSSCP00000045248
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4118,948,040 - 119,064,534 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000105476   ⟹   ENSSSCP00000076871
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4118,947,440 - 119,064,550 (+)Ensembl
RefSeq Acc Id: NM_001245001   ⟹   NP_001231930
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14118,948,040 - 119,065,187 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013997347   ⟹   XP_013852801
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14118,947,793 - 119,065,669 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088656   ⟹   XP_020944315
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14118,600,361 - 119,065,669 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088657   ⟹   XP_020944316
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14118,600,362 - 119,065,669 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020944315   ⟸   XM_021088656
- Peptide Label: isoform X2
- UniProtKB: A0A4X1TT54 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020944316   ⟸   XM_021088657
- Peptide Label: isoform X3
- UniProtKB: A0A8D1UZC2 (UniProtKB/TrEMBL),   A0A4X1TT54 (UniProtKB/TrEMBL),   A0A8D0I0N8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013852801   ⟸   XM_013997347
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TWB0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231930   ⟸   NM_001245001
- UniProtKB: A0A8D0I183 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000045248   ⟸   ENSSSCT00000041130
RefSeq Acc Id: ENSSSCP00000007331   ⟸   ENSSSCT00000007530
RefSeq Acc Id: ENSSSCP00000076871   ⟸   ENSSSCT00000105476

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006876 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005006990 UniProtKB/TrEMBL
  ENSSSCG00025068724 UniProtKB/TrEMBL
  ENSSSCG00030005935 UniProtKB/TrEMBL
  ENSSSCG00060029612 UniProtKB/TrEMBL
  ENSSSCG00070012123 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007530.5 UniProtKB/TrEMBL
  ENSSSCT00000041130.3 UniProtKB/TrEMBL
  ENSSSCT00000105476 ENTREZGENE
  ENSSSCT00000105476.1 UniProtKB/TrEMBL
  ENSSSCT00005010501.1 UniProtKB/TrEMBL
  ENSSSCT00005010760.1 UniProtKB/TrEMBL
  ENSSSCT00005010818.1 UniProtKB/TrEMBL
  ENSSSCT00005010884.1 UniProtKB/TrEMBL
  ENSSSCT00005010918.1 UniProtKB/TrEMBL
  ENSSSCT00005010962.1 UniProtKB/TrEMBL
  ENSSSCT00005011133.1 UniProtKB/TrEMBL
  ENSSSCT00005011159.1 UniProtKB/TrEMBL
  ENSSSCT00025094428.1 UniProtKB/TrEMBL
  ENSSSCT00025094571.1 UniProtKB/TrEMBL
  ENSSSCT00025094710.1 UniProtKB/TrEMBL
  ENSSSCT00030008043.1 UniProtKB/TrEMBL
  ENSSSCT00030008058.1 UniProtKB/TrEMBL
  ENSSSCT00060040003.1 UniProtKB/TrEMBL
  ENSSSCT00060040007.1 UniProtKB/TrEMBL
  ENSSSCT00060040015.1 UniProtKB/TrEMBL
  ENSSSCT00060040017.1 UniProtKB/TrEMBL
  ENSSSCT00070023640.1 UniProtKB/TrEMBL
  ENSSSCT00070023652.1 UniProtKB/TrEMBL
  ENSSSCT00070023658.1 UniProtKB/TrEMBL
Gene3D-CATH Phosphatidic acid phosphatase type 2/haloperoxidase UniProtKB/TrEMBL
InterPro P_Acid_Pase_2/haloperoxi_sf UniProtKB/TrEMBL
  P_Acid_Pase_2/haloperoxidase UniProtKB/TrEMBL
  PLPP UniProtKB/TrEMBL
NCBI Gene PLPPR5 ENTREZGENE
PANTHER PTHR10165 UniProtKB/TrEMBL
  PTHR10165:SF17 UniProtKB/TrEMBL
Pfam PAP2 UniProtKB/TrEMBL
SMART acidPPc UniProtKB/TrEMBL
Superfamily-SCOP SSF48317 UniProtKB/TrEMBL
UniProt A0A287AMV0_PIG UniProtKB/TrEMBL
  A0A4X1TT54 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TWA8_PIG UniProtKB/TrEMBL
  A0A4X1TWB0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0I0N8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0I183 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0I836_PIG UniProtKB/TrEMBL
  A0A8D0IBR3_PIG UniProtKB/TrEMBL
  A0A8D0IBT6_PIG UniProtKB/TrEMBL
  A0A8D0LG88_PIG UniProtKB/TrEMBL
  A0A8D1UZC2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1UZL1_PIG UniProtKB/TrEMBL
  A0A8D1V0Q5_PIG UniProtKB/TrEMBL
  A0A8D2C435_PIG UniProtKB/TrEMBL
  F1S552_PIG UniProtKB/TrEMBL
UniProt Secondary A0A480RFY4 UniProtKB/TrEMBL
VGNC ID VGNC:109449 ENTREZGENE