ATP2C1 (ATPase secretory pathway Ca2+ transporting 1) - Rat Genome Database

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Gene: ATP2C1 (ATPase secretory pathway Ca2+ transporting 1) Sus scrofa
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Symbol: ATP2C1
Name: ATPase secretory pathway Ca2+ transporting 1
RGD ID: 13935071
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); manganese ion binding (ortholog); P-type calcium transporter activity (ortholog); INVOLVED IN calcium ion transport (ortholog); cellular calcium ion homeostasis (ortholog); cellular manganese ion homeostasis (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Hailey-Hailey disease (ortholog); FOUND IN cis-Golgi network membrane (ortholog); Golgi apparatus (ortholog); Golgi cisterna membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: calcium-transporting ATPase type 2C member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl131,438,615 - 1,612,676 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1131,461,562 - 1,580,035 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2131,118,899 - 1,270,494 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
ATP2C1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl131,438,615 - 1,612,676 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1131,461,562 - 1,580,035 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2131,118,899 - 1,270,494 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP2C1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3130,850,595 - 131,016,712 (+)EnsemblGRCh38hg38GRCh38
GRCh383130,850,595 - 131,016,712 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373130,569,439 - 130,735,556 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363132,096,124 - 132,218,246 (+)NCBINCBI36hg18NCBI36
Build 343132,096,131 - 132,204,690NCBI
Celera3129,038,713 - 129,160,803 (+)NCBI
Cytogenetic Map3q22.1NCBI
HuRef3127,954,018 - 128,119,693 (+)NCBIHuRef
CHM1_13130,532,422 - 130,699,080 (+)NCBICHM1_1
Atp2c1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399105,288,561 - 105,398,456 (-)NCBIGRCm39mm39
GRCm39 Ensembl9105,280,738 - 105,404,518 (-)Ensembl
GRCm389105,411,362 - 105,521,257 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9105,403,539 - 105,527,319 (-)EnsemblGRCm38mm10GRCm38
MGSCv379105,313,692 - 105,397,447 (-)NCBIGRCm37mm9NCBIm37
MGSCv369105,269,462 - 105,353,199 (-)NCBImm8
Celera9105,007,157 - 105,064,980 (-)NCBICelera
Cytogenetic Map9F1NCBI
Atp2c1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28106,034,777 - 106,155,854 (-)NCBI
Rnor_6.0 Ensembl8113,955,647 - 114,013,623 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08113,953,959 - 114,039,965 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08113,341,077 - 113,426,614 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48110,516,092 - 110,603,620 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18110,562,294 - 110,623,075 (-)NCBI
Celera8105,376,283 - 105,459,249 (-)NCBICelera
Cytogenetic Map8q32NCBI
Atp2c1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555017,383,150 - 7,519,988 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555017,382,657 - 7,519,789 (-)NCBIChiLan1.0ChiLan1.0
ATP2C1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13135,301,721 - 135,423,700 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3135,260,796 - 135,423,700 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03127,937,272 - 128,101,060 (+)NCBIMhudiblu_PPA_v0panPan3
ATP2C1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12328,097,831 - 28,233,675 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2328,066,639 - 28,235,215 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2328,071,244 - 28,206,384 (+)NCBI
ROS_Cfam_1.02328,573,616 - 28,742,803 (+)NCBI
UMICH_Zoey_3.12328,270,690 - 28,439,119 (+)NCBI
UNSW_CanFamBas_1.02328,360,695 - 28,495,909 (+)NCBI
UU_Cfam_GSD_1.02328,610,117 - 28,745,760 (+)NCBI
Atp2c1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560267,579,716 - 67,714,373 (+)NCBI
SpeTri2.0NW_0049365294,340,131 - 4,474,884 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP2C1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11559,189,075 - 59,348,684 (-)NCBI
ChlSab1.1 Ensembl1559,188,225 - 59,311,709 (-)Ensembl
Vero_WHO_p1.0NW_02366604132,207,172 - 32,372,825 (-)NCBI
Atp2c1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247306,865,197 - 7,001,378 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000012246   ⟹   ENSSSCP00000011931
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl131,446,991 - 1,580,824 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000083235   ⟹   ENSSSCP00000071731
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl131,438,615 - 1,579,970 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000086663   ⟹   ENSSSCP00000063802
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl131,447,049 - 1,580,824 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000089895   ⟹   ENSSSCP00000062440
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl131,446,991 - 1,580,004 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000091541   ⟹   ENSSSCP00000072500
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl131,460,245 - 1,612,676 (-)Ensembl
RefSeq Acc Id: XM_013990075   ⟹   XP_013845529
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1131,461,562 - 1,580,035 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013845529 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein JAG69707 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013845529   ⟸   XM_013990075
- Sequence:
RefSeq Acc Id: ENSSSCP00000071731   ⟸   ENSSSCT00000083235
RefSeq Acc Id: ENSSSCP00000062440   ⟸   ENSSSCT00000089895
RefSeq Acc Id: ENSSSCP00000011931   ⟸   ENSSSCT00000012246
RefSeq Acc Id: ENSSSCP00000072500   ⟸   ENSSSCT00000091541
RefSeq Acc Id: ENSSSCP00000063802   ⟸   ENSSSCT00000086663
Protein Domains
Cation_ATPase_N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011183 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070021006 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000011931 UniProtKB/TrEMBL
  ENSSSCP00000062440 UniProtKB/TrEMBL
  ENSSSCP00000063802 UniProtKB/TrEMBL
  ENSSSCP00000071731 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000072500 UniProtKB/TrEMBL
  ENSSSCP00070035690 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012246 UniProtKB/TrEMBL
  ENSSSCT00000083235 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000086663 UniProtKB/TrEMBL
  ENSSSCT00000089895 UniProtKB/TrEMBL
  ENSSSCT00000091541 UniProtKB/TrEMBL
  ENSSSCT00070042444 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
InterPro ATP2C1 UniProtKB/TrEMBL
  ATPase_P-typ_cation-transptr_C UniProtKB/TrEMBL
  ATPase_P-typ_cation-transptr_N UniProtKB/TrEMBL
  ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  P-type_ATPase_IIA_PMR1 UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
KEGG Report ssc:100157931 UniProtKB/TrEMBL
NCBI Gene ATP2C1 ENTREZGENE
PANTHER PTHR42861:SF2 UniProtKB/TrEMBL
Pfam Cation_ATPase_C UniProtKB/TrEMBL
  Cation_ATPase_N UniProtKB/TrEMBL
PRINTS HATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
SMART Cation_ATPase_N UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
TIGRFAMs ATPase-IIA2_Ca UniProtKB/TrEMBL
  ATPase_P-type UniProtKB/TrEMBL
UniProt A0A4X1V4J2_PIG UniProtKB/TrEMBL
  A0A5G2QFD1_PIG UniProtKB/TrEMBL
  A0A5G2QGB9_PIG UniProtKB/TrEMBL
  A0A5G2R3R7_PIG UniProtKB/TrEMBL
  A0A5G2RDL8_PIG UniProtKB/TrEMBL
  F1RSA2_PIG UniProtKB/TrEMBL
VGNC ID VGNC:85652 ENTREZGENE