CLTRN (collectrin, amino acid transport regulator) - Rat Genome Database

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Gene: CLTRN (collectrin, amino acid transport regulator) Sus scrofa
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Symbol: CLTRN
Name: collectrin, amino acid transport regulator
RGD ID: 13934989
Description: ENCODES a protein that exhibits protein homodimerization activity (inferred); INVOLVED IN calcium-ion regulated exocytosis (ortholog); insulin secretion involved in cellular response to glucose stimulus (ortholog); positive regulation of amino acid transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Fanconi anemia (ortholog); hepatocellular carcinoma (ortholog); FOUND IN brush border membrane (inferred); cytoplasm (inferred); plasma membrane (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: collectrin; TMEM27; transmembrane protein 27
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX12,183,796 - 12,224,964 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X12,183,793 - 12,215,474 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X13,279,802 - 13,292,665 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CLTRN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX12,183,796 - 12,224,964 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X12,183,793 - 12,215,474 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X13,279,802 - 13,292,665 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLTRN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X15,627,318 - 15,675,644 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX15,627,318 - 15,675,012 (-)EnsemblGRCh38hg38GRCh38
GRCh37X15,645,441 - 15,682,928 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X15,555,372 - 15,593,075 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X15,405,107 - 15,442,811NCBI
CeleraX19,760,931 - 19,798,641 (-)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX13,399,991 - 13,438,249 (-)NCBIHuRef
CHM1_1X15,676,401 - 15,714,121 (-)NCBICHM1_1
T2T-CHM13v2.0X15,210,303 - 15,247,770 (-)NCBIT2T-CHM13v2.0
Cltrn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X162,873,183 - 162,901,855 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX162,871,826 - 162,901,856 (+)EnsemblGRCm39 Ensembl
GRCm38X164,090,187 - 164,118,859 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX164,088,830 - 164,118,860 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X160,528,119 - 160,556,791 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X159,434,292 - 159,462,964 (+)NCBIMGSCv36mm8
CeleraX147,304,655 - 147,333,264 (+)NCBICelera
Cytogenetic MapXF5NCBI
cM MapX76.12NCBI
Cltrn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X33,993,825 - 34,027,124 (-)NCBIGRCr8
mRatBN7.2X30,361,967 - 30,395,264 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX30,361,967 - 30,395,349 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX31,394,873 - 31,428,148 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X34,831,861 - 34,865,158 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X31,019,084 - 31,052,359 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X32,118,082 - 32,153,687 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX32,118,054 - 32,153,794 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X32,490,603 - 32,522,780 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X51,118,665 - 51,149,768 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X51,172,133 - 51,203,237 (-)NCBI
CeleraX30,705,756 - 30,738,867 (-)NCBICelera
Cytogenetic MapXq14NCBI
Cltrn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555192,522,155 - 2,570,972 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555192,522,154 - 2,569,722 (+)NCBIChiLan1.0ChiLan1.0
CLTRN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X17,428,298 - 17,465,905 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X17,431,727 - 17,469,290 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X8,255,666 - 8,293,354 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X15,537,112 - 15,574,842 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX15,535,069 - 15,575,268 (-)Ensemblpanpan1.1panPan2
CLTRN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X11,863,479 - 11,908,361 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX11,798,839 - 11,900,594 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX11,770,083 - 11,786,549 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X11,824,506 - 11,859,272 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX11,825,149 - 11,861,692 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X11,887,674 - 11,922,326 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X11,881,588 - 11,916,356 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X11,907,346 - 11,941,809 (-)NCBIUU_Cfam_GSD_1.0
Cltrn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X5,040,429 - 5,129,055 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364705,040,795 - 5,124,192 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364705,040,831 - 5,124,611 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLTRN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X14,103,046 - 14,154,936 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX14,102,497 - 14,154,123 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605615,936,757 - 15,975,408 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cltrn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624829412,532 - 446,938 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624829412,797 - 447,076 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CLTRN
499 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000040993   ⟹   ENSSSCP00000031157
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX12,183,824 - 12,215,760 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000078664   ⟹   ENSSSCP00000071220
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX12,183,806 - 12,224,727 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000080991   ⟹   ENSSSCP00000072483
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX12,183,796 - 12,224,964 (-)Ensembl
RefSeq Acc Id: XM_021080139   ⟹   XP_020935798
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X12,183,793 - 12,215,474 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021080140   ⟹   XP_020935799
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X12,183,793 - 12,212,886 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020935798   ⟸   XM_021080139
- Peptide Label: isoform X1
- UniProtKB: A0A286ZI28 (UniProtKB/TrEMBL),   A0A4X1UWV8 (UniProtKB/TrEMBL),   A0A8D0Y0R3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935799   ⟸   XM_021080140
- Peptide Label: isoform X2
- UniProtKB: A0A8D0JQG1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000031157   ⟸   ENSSSCT00000040993
Ensembl Acc Id: ENSSSCP00000072483   ⟸   ENSSSCT00000080991
Ensembl Acc Id: ENSSSCP00000071220   ⟸   ENSSSCT00000078664
Protein Domains
Collectrin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035893 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00030068840 UniProtKB/TrEMBL
  ENSSSCG00065073059 UniProtKB/TrEMBL
  ENSSSCG00070020024 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000040993 ENTREZGENE
  ENSSSCT00000040993.2 UniProtKB/TrEMBL
  ENSSSCT00000078664 ENTREZGENE
  ENSSSCT00000078664.1 UniProtKB/TrEMBL
  ENSSSCT00000080991.2 UniProtKB/TrEMBL
  ENSSSCT00030096299.1 UniProtKB/TrEMBL
  ENSSSCT00030096332.1 UniProtKB/TrEMBL
  ENSSSCT00065100514.1 UniProtKB/TrEMBL
  ENSSSCT00065100529.1 UniProtKB/TrEMBL
  ENSSSCT00070039695.1 UniProtKB/TrEMBL
  ENSSSCT00070039704.1 UniProtKB/TrEMBL
InterPro Collectrin UniProtKB/TrEMBL
  Collectrin_dom UniProtKB/TrEMBL
NCBI Gene CLTRN ENTREZGENE
PANTHER COLLECTRIN UniProtKB/TrEMBL
  PTHR46884 UniProtKB/TrEMBL
Pfam Collectrin UniProtKB/TrEMBL
PROSITE COLLECTRIN_LIKE UniProtKB/TrEMBL
UniProt A0A286ZI28 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UUV3_PIG UniProtKB/TrEMBL
  A0A4X1UWV8 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R837_PIG UniProtKB/TrEMBL
  A0A5G2RAQ8_PIG UniProtKB/TrEMBL
  A0A8D0JQG1 ENTREZGENE
  A0A8D0Y0R3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:111450 ENTREZGENE