ELAPOR1 (endosome-lysosome associated apoptosis and autophagy regulator 1) - Rat Genome Database

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Gene: ELAPOR1 (endosome-lysosome associated apoptosis and autophagy regulator 1) Sus scrofa
Analyze
Symbol: ELAPOR1
Name: endosome-lysosome associated apoptosis and autophagy regulator 1
RGD ID: 13933881
Description: INVOLVED IN autophagosome assembly (inferred); cellular response to starvation (inferred); positive regulation of autophagosome assembly (inferred); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 63 (ortholog); FOUND IN extracellular exosome (inferred); late endosome (inferred); lysosome (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: KIAA1324; KIAA1324 ortholog; uncharacterized protein LOC100154257; UPF0577 protein KIAA1324 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4110,881,768 - 110,953,967 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14110,881,770 - 110,954,092 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24121,375,550 - 121,448,499 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
ELAPOR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4110,881,768 - 110,953,967 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14110,881,770 - 110,954,092 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24121,375,550 - 121,448,499 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ELAPOR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381109,114,115 - 109,206,781 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1109,113,679 - 109,206,781 (+)EnsemblGRCh38hg38GRCh38
GRCh371109,656,737 - 109,749,403 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361109,458,056 - 109,547,377 (+)NCBINCBI36Build 36hg18NCBI36
Celera1107,925,989 - 108,018,762 (+)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1107,549,937 - 107,642,627 (+)NCBIHuRef
CHM1_11109,771,250 - 109,864,198 (+)NCBICHM1_1
T2T-CHM13v2.01109,146,975 - 109,239,594 (+)NCBIT2T-CHM13v2.0
Elapor1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393108,362,995 - 108,444,064 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3108,363,010 - 108,443,852 (-)EnsemblGRCm39 Ensembl
GRCm383108,455,679 - 108,536,745 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3108,455,694 - 108,536,536 (-)EnsemblGRCm38mm10GRCm38
MGSCv373108,260,987 - 108,339,440 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363108,586,125 - 108,664,578 (-)NCBIMGSCv36mm8
Celera3110,792,283 - 110,871,416 (-)NCBICelera
Cytogenetic Map3F3NCBI
cM Map347.14NCBI
Elapor1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82198,777,323 - 198,856,497 (-)NCBIGRCr8
mRatBN7.22196,089,199 - 196,169,055 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2196,091,646 - 196,168,716 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02211,243,398 - 211,323,283 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2211,246,068 - 211,322,719 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02230,713,564 - 230,792,887 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42204,016,795 - 204,085,212 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12203,984,643 - 204,062,759 (-)NCBI
Celera2188,735,969 - 188,814,775 (-)NCBICelera
Cytogenetic Map2q34NCBI
Elapor1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543512,531,642 - 12,627,874 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543512,531,651 - 12,626,969 (+)NCBIChiLan1.0ChiLan1.0
ELAPOR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21118,100,092 - 118,191,353 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11117,260,051 - 117,351,423 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01111,490,488 - 111,583,703 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11110,654,623 - 110,744,543 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1110,654,844 - 110,744,323 (+)Ensemblpanpan1.1panPan2
ELAPOR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1642,612,130 - 42,681,161 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl642,613,546 - 42,681,015 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha645,385,697 - 45,455,848 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0642,942,285 - 43,012,558 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl642,942,417 - 43,013,284 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1642,673,609 - 42,743,779 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0642,631,650 - 42,701,825 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0643,067,018 - 43,137,157 (-)NCBIUU_Cfam_GSD_1.0
Elapor1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505819,374,997 - 19,460,830 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936704653,403 - 739,151 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936704653,434 - 736,660 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELAPOR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12024,357,584 - 24,365,702 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603833,967,182 - 33,981,820 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Elapor1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247724,873,468 - 4,953,655 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247724,873,473 - 4,950,868 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ELAPOR1
2813 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system nervous system reproductive system respiratory system
High
Medium 2 3 3
Low 6 1 20 1 1
Below cutoff 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000007487   ⟹   ENSSSCP00000007291
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4110,881,773 - 110,953,917 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000056727   ⟹   ENSSSCP00000044197
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4110,881,768 - 110,953,954 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000063577   ⟹   ENSSSCP00000038589
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4110,881,773 - 110,953,917 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000074426   ⟹   ENSSSCP00000064017
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4110,881,773 - 110,953,967 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000082011   ⟹   ENSSSCP00000061889
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl4110,884,344 - 110,953,952 (-)Ensembl
RefSeq Acc Id: XM_005663592   ⟹   XP_005663649
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14110,881,770 - 110,954,080 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013997295   ⟹   XP_013852749
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14110,881,770 - 110,954,092 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090086   ⟹   XP_020945745
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14110,881,770 - 110,954,080 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090088   ⟹   XP_020945747
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14110,881,770 - 110,954,080 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021090089   ⟹   XP_020945748
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14110,881,770 - 110,951,902 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001308467
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14110,881,770 - 110,954,080 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002343533
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14110,881,770 - 110,954,080 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002343534
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.14110,881,770 - 110,954,080 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_013852749   ⟸   XM_013997295
- Peptide Label: isoform X3
- UniProtKB: F1S5Z2 (UniProtKB/TrEMBL),   A0A4X1THC6 (UniProtKB/TrEMBL),   A0A8D0I930 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005663649   ⟸   XM_005663592
- Peptide Label: isoform X4
- UniProtKB: A0A8D0YIW2 (UniProtKB/TrEMBL),   A0A287AJL5 (UniProtKB/TrEMBL),   A0A8D1IKA5 (UniProtKB/TrEMBL),   A0A8D1Z3V7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020945747   ⟸   XM_021090088
- Peptide Label: isoform X2
- UniProtKB: A0A8D1EQY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020945745   ⟸   XM_021090086
- Peptide Label: isoform X1
- UniProtKB: A0A8D0WN77 (UniProtKB/TrEMBL),   A0A8D1MGE8 (UniProtKB/TrEMBL),   A0A8D1YXZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020945748   ⟸   XM_021090089
- Peptide Label: isoform X5
- UniProtKB: A0A8D1EQY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000064017   ⟸   ENSSSCT00000074426
RefSeq Acc Id: ENSSSCP00000007291   ⟸   ENSSSCT00000007487
RefSeq Acc Id: ENSSSCP00000044197   ⟸   ENSSSCT00000056727
RefSeq Acc Id: ENSSSCP00000038589   ⟸   ENSSSCT00000063577
RefSeq Acc Id: ENSSSCP00000061889   ⟸   ENSSSCT00000082011
Protein Domains
MRH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006836 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005005796 UniProtKB/TrEMBL
  ENSSSCG00015040371 UniProtKB/TrEMBL
  ENSSSCG00025011298 UniProtKB/TrEMBL
  ENSSSCG00030036668 UniProtKB/TrEMBL
  ENSSSCG00035003789 UniProtKB/TrEMBL
  ENSSSCG00040046345 UniProtKB/TrEMBL
  ENSSSCG00045030321 UniProtKB/TrEMBL
  ENSSSCG00050041546 UniProtKB/TrEMBL
  ENSSSCG00060009991 UniProtKB/TrEMBL
  ENSSSCG00065048326 UniProtKB/TrEMBL
  ENSSSCG00070008875 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007487 ENTREZGENE
  ENSSSCT00000007487.4 UniProtKB/TrEMBL
  ENSSSCT00000056727 ENTREZGENE
  ENSSSCT00000056727.3 UniProtKB/TrEMBL
  ENSSSCT00000063577.2 UniProtKB/TrEMBL
  ENSSSCT00000074426.1 UniProtKB/TrEMBL
  ENSSSCT00000082011.1 UniProtKB/TrEMBL
  ENSSSCT00005008832.1 UniProtKB/TrEMBL
  ENSSSCT00005009007.1 UniProtKB/TrEMBL
  ENSSSCT00015053825.1 UniProtKB/TrEMBL
  ENSSSCT00015054443.1 UniProtKB/TrEMBL
  ENSSSCT00025014863.1 UniProtKB/TrEMBL
  ENSSSCT00025015020.1 UniProtKB/TrEMBL
  ENSSSCT00030051008.1 UniProtKB/TrEMBL
  ENSSSCT00030051070.1 UniProtKB/TrEMBL
  ENSSSCT00035004714.1 UniProtKB/TrEMBL
  ENSSSCT00035004730.1 UniProtKB/TrEMBL
  ENSSSCT00040062362.1 UniProtKB/TrEMBL
  ENSSSCT00040062438.1 UniProtKB/TrEMBL
  ENSSSCT00045051742.1 UniProtKB/TrEMBL
  ENSSSCT00045052325.1 UniProtKB/TrEMBL
  ENSSSCT00050056354.1 UniProtKB/TrEMBL
  ENSSSCT00050056373.1 UniProtKB/TrEMBL
  ENSSSCT00060012927.1 UniProtKB/TrEMBL
  ENSSSCT00060012932.1 UniProtKB/TrEMBL
  ENSSSCT00065066092.1 UniProtKB/TrEMBL
  ENSSSCT00065066094.1 UniProtKB/TrEMBL
  ENSSSCT00070017228.1 UniProtKB/TrEMBL
Gene3D-CATH 2.70.130.10 UniProtKB/TrEMBL
  Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/TrEMBL
InterPro EIG121-like UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  Man6P_isomerase_rcpt-bd_dom_sf UniProtKB/TrEMBL
  MRH_dom UniProtKB/TrEMBL
KEGG Report ssc:100154257 UniProtKB/TrEMBL
NCBI Gene KIAA1324 ENTREZGENE
PANTHER ENDOSOME/LYSOSOME-ASSOCIATED APOPTOSIS AND AUTOPHAGY REGULATOR 1 UniProtKB/TrEMBL
  PTHR22727 UniProtKB/TrEMBL
PROSITE MRH UniProtKB/TrEMBL
SMART Ephrin_rec_like UniProtKB/TrEMBL
Superfamily-SCOP SSF50911 UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
UniProt A0A287A3P6_PIG UniProtKB/TrEMBL
  A0A287AJL5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1THC6 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QIP0_PIG UniProtKB/TrEMBL
  A0A5G2QJA8_PIG UniProtKB/TrEMBL
  A0A8D0I930 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0WN77 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YIW2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1EQY0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1IKA5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1MGE8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1YXZ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Z3V7 ENTREZGENE, UniProtKB/TrEMBL
  F1S5Z2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:89442 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-03-10 ELAPOR1  endosome-lysosome associated apoptosis and autophagy regulator 1  KIAA1324  KIAA1324  Symbol and/or name change 5135510 APPROVED
2020-03-04 KIAA1324  KIAA1324  KIAA1324  KIAA1324 ortholog  Symbol and/or name change 5135510 APPROVED