NUDT7 (nudix hydrolase 7) - Rat Genome Database

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Gene: NUDT7 (nudix hydrolase 7) Sus scrofa
Analyze
Symbol: NUDT7
Name: nudix hydrolase 7
RGD ID: 13932744
Description: ENCODES a protein that exhibits m7G(5')pppN diphosphatase activity (ortholog); INVOLVED IN acetyl-CoA catabolic process (ortholog); brown fat cell differentiation (ortholog); coenzyme A catabolic process (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Liver Neoplasms (ortholog); FOUND IN peroxisome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: nudix (nucleoside diphosphate linked moiety X)-type motif 7, variant 1; nudix (nucleoside diphosphate linked moiety X)-type motif 7, variant 2; NUDT7_1; NUDT7_2; peroxisomal coenzyme A diphosphatase NUDT7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl610,158,688 - 10,173,980 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1610,161,959 - 10,174,006 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2610,102,285 - 10,114,189 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
peroxisome  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:19749013  


Genomics

Comparative Map Data
NUDT7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl610,158,688 - 10,173,980 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1610,161,959 - 10,174,006 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2610,102,285 - 10,114,189 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUDT7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1677,722,492 - 77,742,260 (+)EnsemblGRCh38hg38GRCh38
GRCh381677,722,514 - 77,742,260 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371677,756,411 - 77,776,157 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361676,313,912 - 76,333,655 (+)NCBINCBI36hg18NCBI36
Celera1662,054,090 - 62,073,833 (+)NCBI
Cytogenetic Map16q23.1NCBI
HuRef1663,512,539 - 63,532,315 (+)NCBIHuRef
CHM1_11679,167,909 - 79,187,677 (+)NCBICHM1_1
Nudt7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398114,860,314 - 114,881,471 (+)NCBIGRCm39mm39
GRCm39 Ensembl8114,860,297 - 114,881,479 (+)Ensembl
GRCm388114,133,574 - 114,154,731 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8114,133,557 - 114,154,739 (+)EnsemblGRCm38mm10GRCm38
MGSCv378116,657,479 - 116,676,205 (+)NCBIGRCm37mm9NCBIm37
MGSCv368117,019,592 - 117,038,289 (+)NCBImm8
Celera8118,345,752 - 118,364,538 (+)NCBICelera
Cytogenetic Map8E1NCBI
Nudt7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21942,125,679 - 42,151,198 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1942,125,711 - 42,151,081 (+)Ensembl
Rnor_6.01946,455,745 - 46,470,070 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1946,455,761 - 46,482,050 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01957,278,677 - 57,293,046 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41944,181,782 - 44,196,976 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1941,436,677 - 41,450,937 (+)NCBICelera
Cytogenetic Map19q12NCBI
Nudt7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955522944,565 - 960,244 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955522945,186 - 960,094 (+)NCBIChiLan1.0ChiLan1.0
NUDT7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11677,747,944 - 77,767,687 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1677,747,863 - 77,801,651 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01658,312,917 - 58,333,256 (+)NCBIMhudiblu_PPA_v0panPan3
NUDT7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1573,515,819 - 73,527,780 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl573,516,166 - 73,527,716 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha573,463,629 - 73,475,592 (-)NCBI
ROS_Cfam_1.0573,822,491 - 73,834,439 (-)NCBI
UMICH_Zoey_3.1573,762,630 - 73,774,557 (-)NCBI
UNSW_CanFamBas_1.0573,598,591 - 73,610,719 (-)NCBI
UU_Cfam_GSD_1.0574,082,829 - 74,094,799 (-)NCBI
Nudt7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934933,496,220 - 33,509,844 (-)NCBI
SpeTri2.0NW_00493647526,079,298 - 26,095,466 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUDT7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1563,212,163 - 63,231,465 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl563,212,226 - 63,231,650 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604712,817,483 - 12,836,766 (-)NCBIVero_WHO_p1.0
Nudt7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247469,228,656 - 9,242,808 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 1 3 2 21 2 1 2
Low 2 3 5 2 2 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000002991   ⟹   ENSSSCP00000002912
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl610,161,959 - 10,173,961 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000066940   ⟹   ENSSSCP00000065481
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl610,158,688 - 10,173,961 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000068096   ⟹   ENSSSCP00000073562
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl610,161,962 - 10,173,954 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000086579   ⟹   ENSSSCP00000065918
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl610,161,962 - 10,173,980 (-)Ensembl
RefSeq Acc Id: XM_003481783   ⟹   XP_003481831
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1610,161,959 - 10,174,006 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003481784   ⟹   XP_003481832
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1610,161,959 - 10,174,006 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003481785   ⟹   XP_003481833
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1610,161,959 - 10,174,006 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003481831 (Get FASTA)   NCBI Sequence Viewer  
  XP_003481832 (Get FASTA)   NCBI Sequence Viewer  
  XP_003481833 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAH82841 (Get FASTA)   NCBI Sequence Viewer  
  BAH82842 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003481833   ⟸   XM_003481785
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_003481831   ⟸   XM_003481783
- Peptide Label: isoform X2
- UniProtKB: F1S465 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003481832   ⟸   XM_003481784
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSSSCP00000073562   ⟸   ENSSSCT00000068096
RefSeq Acc Id: ENSSSCP00000002912   ⟸   ENSSSCT00000002991
RefSeq Acc Id: ENSSSCP00000065481   ⟸   ENSSSCT00000066940
RefSeq Acc Id: ENSSSCP00000065918   ⟸   ENSSSCT00000086579
Protein Domains
Nudix hydrolase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002697 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070004824 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000002912 UniProtKB/TrEMBL
  ENSSSCP00000065481 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000065918 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000073562 UniProtKB/TrEMBL
  ENSSSCP00070007477 UniProtKB/TrEMBL
  ENSSSCP00070007478 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000002991 UniProtKB/TrEMBL
  ENSSSCT00000066940 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000068096 UniProtKB/TrEMBL
  ENSSSCT00000086579 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070009110 UniProtKB/TrEMBL
  ENSSSCT00070009111 UniProtKB/TrEMBL
InterPro NUDIX_hydrolase-like_dom_sf UniProtKB/TrEMBL
  NUDIX_hydrolase_dom UniProtKB/TrEMBL
  NUDIX_hydrolase_NudL_CS UniProtKB/TrEMBL
KEGG Report ssc:100738827 UniProtKB/TrEMBL
NCBI Gene NUDT7 ENTREZGENE
Pfam NUDIX UniProtKB/TrEMBL
PROSITE NUDIX UniProtKB/TrEMBL
  NUDIX_COA UniProtKB/TrEMBL
Superfamily-SCOP SSF55811 UniProtKB/TrEMBL
UniProt A0A4X1SWF9_PIG UniProtKB/TrEMBL
  A0A4X1SX26_PIG UniProtKB/TrEMBL
  A0A5G2QLN6_PIG UniProtKB/TrEMBL
  A0A5G2QVD7_PIG UniProtKB/TrEMBL
  A0A5G2RFH7_PIG UniProtKB/TrEMBL
  F1S465 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:90964 ENTREZGENE