LOC110261322 (zinc finger protein 773-like)

Gene: LOC110261322 (zinc finger protein 773-like) Sus scrofa

Analyze

Symbol:

LOC110261322 (Ensembl: ZNF773)

Name:

zinc finger protein 773-like (Ensembl:zinc finger protein 773)

RGD ID:

13932122

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of gene expression (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	61,929,587 - 61,941,939 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	61,929,542 - 61,941,954 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of DNA-templated transcription (IEA)

regulation of gene expression (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

LOC110261322
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	61,929,587 - 61,941,939 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	61,929,542 - 61,941,954 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ZNF773
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	57,499,938 - 57,518,437 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	57,499,915 - 57,518,404 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	58,011,306 - 58,029,805 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	62,703,121 - 62,711,338 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	55,054,897 - 55,063,116 (+)	NCBI		Celera
Cytogenetic Map	19	q13.43	NCBI
HuRef	19	54,323,588 - 54,331,805 (+)	NCBI		HuRef
CHM1_1	19	58,005,278 - 58,013,493 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	60,596,886 - 60,615,371 (+)	NCBI		T2T-CHM13v2.0

Zfp772
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	7,205,121 - 7,212,997 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	7,205,116 - 7,212,997 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	7,202,122 - 7,209,998 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	7,202,117 - 7,209,998 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	7,154,833 - 7,162,709 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	6,807,099 - 6,814,040 (-)	NCBI		MGSCv36	mm8
Celera	7	6,914,436 - 6,922,309 (-)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	4.18	NCBI

Znf773
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	75,822,633 - 75,835,732 (+)	NCBI		GRCr8
mRatBN7.2	1	66,789,930 - 66,802,405 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	66,788,479 - 66,802,623 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	1	69,865,593 - 69,879,897 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	69,866,069 - 69,879,804 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	71,264,490 - 71,276,647 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	1	64,542,187 - 64,556,490 (+)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

LOC106558942
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	100,619,707 - 100,702,728 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	100,620,837 - 100,633,390 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1 Ensembl	1	100,620,837 - 100,633,390 (-)	NCBI	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	100,852,828 - 100,940,235 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	101,265,694 - 101,353,147 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	101,265,696 - 101,279,228 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	100,934,446 - 101,022,069 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	100,621,015 - 100,708,451 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	101,377,286 - 101,464,703 (-)	NCBI		UU_Cfam_GSD_1.0

ZNF773
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	49,883,370 - 49,888,586 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666045	2,965,333 - 2,973,330 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in LOC110261322
24 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium
Low	7	4	3	5	2	23	2	3	2
Below cutoff	3								1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021097330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021097331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021097332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002345383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01028482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000043187 ⟹ ENSSSCP00000037823

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	61,929,587 - 61,941,939 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000054825 ⟹ ENSSSCP00000040229

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	61,929,046 - 61,941,942 (+)	Ensembl

RefSeq Acc Id:

XM_021097330 ⟹ XP_020952989

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	61,929,542 - 61,941,954 (+)	NCBI

Sequence:

show sequence

TTAAAGTGTGTGGAACCCGATGGGCGGGACTTCCGGCGTCGCCTTAGGGTCCGTCCTCCCGATT
AGAGCCTCCGGAAACCTGGTGTTGAGCTTGGGGCACGAGAGCAAGAAGGCTCGAGAGGAGGCAG
CCGTTGTCTTCAACGCACAAAGGCGGTGCTGGCGTTCGGCAGCGACGCCGAGGGTAACCCGATT
CTGGGTCGGGGGCAGGGATGCCTGGGTCCCGACCTGGTCCTCCGCTCCCCGCCCCTCTCAGCCC
TCAGACTCCGATGGCGGCGGCCGCGCGGAGGGTCCCGGTTCAGGTAAACGCTCGTCCTCTAGAC
GCTCAGCCCCTCGGACACTCAAGGGCCCGCTGACCGTCCCCTGCTCAAGCACCTGGGCCCAGGG
ACAAGTGACCTTTGAGGACGTGGCTGTCTGCTTCTCACAGGAGGAGTGGGGGCTCCTTGATGAA
ACCCAGAGGCTCCTGTACCGCAGTGTGATGCTGGAGACCTTCTCACTGATGGCCTCTCTGGGAC
TCACATCTTCCAGGACGCATGACATTTCTCAGCTGGAGCGGTGGGGAGAGCCCTTTCTGTCTGC
CAGTGGAGCCATGCGTGCAACCAGGCCAACAGGTTGTTGGCATGGAGTGCAGGCTGAGGAGGCC
CCATCCAAGCAGAGTGTTTACGCAGGAGTGCTCAGAGCAAAGCTTCACCAACACCAGCAGCTGA
GCTCTAGAGAGAAACCTGTAAGAGGAGAAGAGGGTGGGAAGCACTCCCCAACGGGCTCTGGTCT
CCTCAGGCATCAAGTGGCTCAGAGCAGAGGGGAGCCACACAGGAGCACTGAAAGCACAGAGGAT
TTTCACCCAGGAAAAAGGCATTACAGATGCAGTGAATGTGGGAAAGCCTTTGGTCAGAAATACT
TACTTGTTCAGCACCAAAGACTACACACTGGAGAAAAGCCTTATGAATGCAGTGAATGTGGGAA
ATTATTTAGCCATAAATCCAACCTTTTTATACACCAAATAGTGCACACTGGTGAAAGGCCTTAT
GGGTGTAATGAATGTGGAAAATCCTTTAGTCGCAATGCTGACCTCATACAACACCGGAGAGTTC
ACACTGGAGAAAAGCCTTTTACATGCAGTGAATGTGGAAAAGCCTTCAGGCATAATTCCACACT
AGTCCAGCATCACAGAATCCACACTGGAGTAAGGCCTTATGAGTGCAGTGAATGTGGAAAATTC
TTTAGCTTTAACTCAAGCCTCATGAAACATCAGAGAGTTCACACTGGAGAAAGACCTTACAAAT
GCAGTGAATGTGGGAAGTTCTATAGCCACAAGTCAAGCCTTATTAATCACTGGCGAATTCACAC
TGGGGAAAGACCTTATGAGTGCAGTGAATGTGGAAAATTTTTTAGCCAAAGCTCTAGTCTCATG
CAGCACCGAAAAGTTCACACTGGAGAAAAGCCTTTTAAATGCGATGAATGTGGAAGATTGTTTA
GTGAGAATTCTAGCCTCGTTAAACACCAGAGGGTTCACACTGGAGCCAGACCTTACGAGTGCAG
GGAATGTGGGAAATTCTTCCGCCATAGCTCCAGCCTTGTCAAACATCGGAGGATTCACACTGGA
GAAATGCCTTATGAGTGTAGCAACTGTGGGAAATCATTTAGCCAGCGCTTCAACCTCATTCAAC
ACCAGAAAATTCACAGTGGAGAACAATCTTGAATGTAACTAATGTGGAAAAGCCTTTAACCAAA
GGTCTGTGCCAGTTCAGCAACAGAAACTTCACAACCCAGACAAGCCTTATGAATACAGGATGTG
AAGAAAGGTTTCAGCCAAAGGCTTAACCCTGTTTGGCACCAGTAAGTTCAGACTGGAGAAAGGC
CTCAAGAGTACAGGGCATGTCTCTGTCATACCATAAGCTTACAGAAGCTTGAAGAGTAGCATTT
AATGAGTGAGCCAACAATTGACTGTCACTCATCCTGACACACACTGGAGCAGGATGAGAACTGC
TGACATACTGCCCCTCCTGAGAGGCTAGTCCACTGCCTGCCATCTCAGAGAGAGGGAGCCCTGT
AACCTTGGCTGCATCAGTCCAGAATGGAGTTTCCATCTCTTGAGTTTGGAGCAAGGGGAGGGGA
GGATGTGTGGTCTTGGTTCAGATGTGACTGTCTCTTGCTGTTCTTACTGGAATATTAGGTTTTC
TTAAATAAACGTTTCTTCATTTGCTGTTATCCTTAGGATCATTTCCAGAGGCATTAAATGGTGT
TTTTATGATTTTCACCAGTTTCACTGGGAAGCAGGCCTGCAAAGTTCCTCACACTGTCGTGCTG
GAAGTTGATCCAAACATTTAACTTCTTCAGAACTGGCCACTCTGTGTCTTAAATGGATATGCCA
TTTCGCATTTCTTCCTGGAGTGTATTAGATTTCCAGTTTCTTCATTCTTGCTGACTTTTGTATG
TAAGACATTGGCCATTCATTTTAGCCATTCTAGTAGATGTGTAGTAGGATTTTATTATGGTTTT
AATTTGCATTTCCCTAAAGACTCAGTGTTGAGTTTTTCTCCCTGTGTGTTTGCCATTCATATAT
CTTCTTTAGTGAATTATTTGTTCAAAGTTTTTTGCCTACTATTAAAATAATTGTCCTGCAATTT
AATATATTGTGGATACAAGTTACTCATTGATAAATGCTTAACCAATATTTCCTCACCA

hide sequence

RefSeq Acc Id:

XM_021097331 ⟹ XP_020952990

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	61,929,542 - 61,941,954 (+)	NCBI

Sequence:

show sequence

TTAAAGTGTGTGGAACCCGATGGGCGGGACTTCCGGCGTCGCCTTAGGGTCCGTCCTCCCGATT
AGAGCCTCCGGAAACCTGGTGTTGAGCTTGGGGCACGAGAGCAAGAAGGCTCGAGAGGAGGCAG
CCGTTGTCTTCAACGCACAAAGGCGGTGCTGGCGTTCGGCAGCGACGCCGAGGGTAACCCGATT
CTGGGTCGGGGGCAGGGATGCCTGGGTCCCGACCTGGTCCTCCGCTCCCCGCCCCTCTCAGCCC
TCAGACTCCGATGGCGGCGGCCGCGCGGAGGGTCCCGGTTCAGGACTCACATCTTCCAGGACGC
ATGACATTTCTCAGCTGGAGCGGTGGGGAGAGCCCTTTCTGTCTGCCAGTGGAGCCATGCGTGC
AACCAGGCCAACAGGTTGTTGGCATGGAGTGCAGGCTGAGGAGGCCCCATCCAAGCAGAGTGTT
TACGCAGGAGTGCTCAGAGCAAAGCTTCACCAACACCAGCAGCTGAGCTCTAGAGAGAAACCTG
TAAGAGGAGAAGAGGGTGGGAAGCACTCCCCAACGGGCTCTGGTCTCCTCAGGCATCAAGTGGC
TCAGAGCAGAGGGGAGCCACACAGGAGCACTGAAAGCACAGAGGATTTTCACCCAGGAAAAAGG
CATTACAGATGCAGTGAATGTGGGAAAGCCTTTGGTCAGAAATACTTACTTGTTCAGCACCAAA
GACTACACACTGGAGAAAAGCCTTATGAATGCAGTGAATGTGGGAAATTATTTAGCCATAAATC
CAACCTTTTTATACACCAAATAGTGCACACTGGTGAAAGGCCTTATGGGTGTAATGAATGTGGA
AAATCCTTTAGTCGCAATGCTGACCTCATACAACACCGGAGAGTTCACACTGGAGAAAAGCCTT
TTACATGCAGTGAATGTGGAAAAGCCTTCAGGCATAATTCCACACTAGTCCAGCATCACAGAAT
CCACACTGGAGTAAGGCCTTATGAGTGCAGTGAATGTGGAAAATTCTTTAGCTTTAACTCAAGC
CTCATGAAACATCAGAGAGTTCACACTGGAGAAAGACCTTACAAATGCAGTGAATGTGGGAAGT
TCTATAGCCACAAGTCAAGCCTTATTAATCACTGGCGAATTCACACTGGGGAAAGACCTTATGA
GTGCAGTGAATGTGGAAAATTTTTTAGCCAAAGCTCTAGTCTCATGCAGCACCGAAAAGTTCAC
ACTGGAGAAAAGCCTTTTAAATGCGATGAATGTGGAAGATTGTTTAGTGAGAATTCTAGCCTCG
TTAAACACCAGAGGGTTCACACTGGAGCCAGACCTTACGAGTGCAGGGAATGTGGGAAATTCTT
CCGCCATAGCTCCAGCCTTGTCAAACATCGGAGGATTCACACTGGAGAAATGCCTTATGAGTGT
AGCAACTGTGGGAAATCATTTAGCCAGCGCTTCAACCTCATTCAACACCAGAAAATTCACAGTG
GAGAACAATCTTGAATGTAACTAATGTGGAAAAGCCTTTAACCAAAGGTCTGTGCCAGTTCAGC
AACAGAAACTTCACAACCCAGACAAGCCTTATGAATACAGGATGTGAAGAAAGGTTTCAGCCAA
AGGCTTAACCCTGTTTGGCACCAGTAAGTTCAGACTGGAGAAAGGCCTCAAGAGTACAGGGCAT
GTCTCTGTCATACCATAAGCTTACAGAAGCTTGAAGAGTAGCATTTAATGAGTGAGCCAACAAT
TGACTGTCACTCATCCTGACACACACTGGAGCAGGATGAGAACTGCTGACATACTGCCCCTCCT
GAGAGGCTAGTCCACTGCCTGCCATCTCAGAGAGAGGGAGCCCTGTAACCTTGGCTGCATCAGT
CCAGAATGGAGTTTCCATCTCTTGAGTTTGGAGCAAGGGGAGGGGAGGATGTGTGGTCTTGGTT
CAGATGTGACTGTCTCTTGCTGTTCTTACTGGAATATTAGGTTTTCTTAAATAAACGTTTCTTC
ATTTGCTGTTATCCTTAGGATCATTTCCAGAGGCATTAAATGGTGTTTTTATGATTTTCACCAG
TTTCACTGGGAAGCAGGCCTGCAAAGTTCCTCACACTGTCGTGCTGGAAGTTGATCCAAACATT
TAACTTCTTCAGAACTGGCCACTCTGTGTCTTAAATGGATATGCCATTTCGCATTTCTTCCTGG
AGTGTATTAGATTTCCAGTTTCTTCATTCTTGCTGACTTTTGTATGTAAGACATTGGCCATTCA
TTTTAGCCATTCTAGTAGATGTGTAGTAGGATTTTATTATGGTTTTAATTTGCATTTCCCTAAA
GACTCAGTGTTGAGTTTTTCTCCCTGTGTGTTTGCCATTCATATATCTTCTTTAGTGAATTATT
TGTTCAAAGTTTTTTGCCTACTATTAAAATAATTGTCCTGCAATTTAATATATTGTGGATACAA
GTTACTCATTGATAAATGCTTAACCAATATTTCCTCACCA

hide sequence

RefSeq Acc Id:

XM_021097332 ⟹ XP_020952991

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	61,929,703 - 61,941,954 (+)	NCBI

Sequence:

show sequence

GTTCGGCAGCGACGCCGAGGGTAACCCGATTCTGGGTCGGGGGCAGGGATGCCTGGGTCCCGAC
CTGGTCCTCCGCTCCCCGCCCCTCTCAGCCCTCAGACTCCGATGGCGGCGGCCGCGCGGAGGGT
CCCGGTTCAGGGACAAGTGACCTTTGAGGACGTGGCTGTCTGCTTCTCACAGGAGGAGTGGGGG
CTCCTTGATGAAACCCAGAGGCTCCTGTACCGCAGTGTGATGCTGGAGACCTTCTCACTGATGG
CCTCTCTGGGACTCACATCTTCCAGGACGCATGACATTTCTCAGCTGGAGCGGTGGGGAGAGCC
CTTTCTGTCTGCCAGTGGAGCCATGCGTGCAACCAGGCCAACAGGTTGTTGGCATGGAGTGCAG
GCTGAGGAGGCCCCATCCAAGCAGAGTGTTTACGCAGGAGTGCTCAGAGCAAAGCTTCACCAAC
ACCAGCAGCTGAGCTCTAGAGAGAAACCTGTAAGAGGAGAAGAGGGTGGGAAGCACTCCCCAAC
GGGCTCTGGTCTCCTCAGGCATCAAGTGGCTCAGAGCAGAGGGGAGCCACACAGGAGCACTGAA
AGCACAGAGGATTTTCACCCAGGAAAAAGGCATTACAGATGCAGTGAATGTGGGAAAGCCTTTG
GTCAGAAATACTTACTTGTTCAGCACCAAAGACTACACACTGGAGAAAAGCCTTATGAATGCAG
TGAATGTGGGAAATTATTTAGCCATAAATCCAACCTTTTTATACACCAAATAGTGCACACTGGT
GAAAGGCCTTATGGGTGTAATGAATGTGGAAAATCCTTTAGTCGCAATGCTGACCTCATACAAC
ACCGGAGAGTTCACACTGGAGAAAAGCCTTTTACATGCAGTGAATGTGGAAAAGCCTTCAGGCA
TAATTCCACACTAGTCCAGCATCACAGAATCCACACTGGAGTAAGGCCTTATGAGTGCAGTGAA
TGTGGAAAATTCTTTAGCTTTAACTCAAGCCTCATGAAACATCAGAGAGTTCACACTGGAGAAA
GACCTTACAAATGCAGTGAATGTGGGAAGTTCTATAGCCACAAGTCAAGCCTTATTAATCACTG
GCGAATTCACACTGGGGAAAGACCTTATGAGTGCAGTGAATGTGGAAAATTTTTTAGCCAAAGC
TCTAGTCTCATGCAGCACCGAAAAGTTCACACTGGAGAAAAGCCTTTTAAATGCGATGAATGTG
GAAGATTGTTTAGTGAGAATTCTAGCCTCGTTAAACACCAGAGGGTTCACACTGGAGCCAGACC
TTACGAGTGCAGGGAATGTGGGAAATTCTTCCGCCATAGCTCCAGCCTTGTCAAACATCGGAGG
ATTCACACTGGAGAAATGCCTTATGAGTGTAGCAACTGTGGGAAATCATTTAGCCAGCGCTTCA
ACCTCATTCAACACCAGAAAATTCACAGTGGAGAACAATCTTGAATGTAACTAATGTGGAAAAG
CCTTTAACCAAAGGTCTGTGCCAGTTCAGCAACAGAAACTTCACAACCCAGACAAGCCTTATGA
ATACAGGATGTGAAGAAAGGTTTCAGCCAAAGGCTTAACCCTGTTTGGCACCAGTAAGTTCAGA
CTGGAGAAAGGCCTCAAGAGTACAGGGCATGTCTCTGTCATACCATAAGCTTACAGAAGCTTGA
AGAGTAGCATTTAATGAGTGAGCCAACAATTGACTGTCACTCATCCTGACACACACTGGAGCAG
GATGAGAACTGCTGACATACTGCCCCTCCTGAGAGGCTAGTCCACTGCCTGCCATCTCAGAGAG
AGGGAGCCCTGTAACCTTGGCTGCATCAGTCCAGAATGGAGTTTCCATCTCTTGAGTTTGGAGC
AAGGGGAGGGGAGGATGTGTGGTCTTGGTTCAGATGTGACTGTCTCTTGCTGTTCTTACTGGAA
TATTAGGTTTTCTTAAATAAACGTTTCTTCATTTGCTGTTATCCTTAGGATCATTTCCAGAGGC
ATTAAATGGTGTTTTTATGATTTTCACCAGTTTCACTGGGAAGCAGGCCTGCAAAGTTCCTCAC
ACTGTCGTGCTGGAAGTTGATCCAAACATTTAACTTCTTCAGAACTGGCCACTCTGTGTCTTAA
ATGGATATGCCATTTCGCATTTCTTCCTGGAGTGTATTAGATTTCCAGTTTCTTCATTCTTGCT
GACTTTTGTATGTAAGACATTGGCCATTCATTTTAGCCATTCTAGTAGATGTGTAGTAGGATTT
TATTATGGTTTTAATTTGCATTTCCCTAAAGACTCAGTGTTGAGTTTTTCTCCCTGTGTGTTTG
CCATTCATATATCTTCTTTAGTGAATTATTTGTTCAAAGTTTTTTGCCTACTATTAAAATAATT
GTCCTGCAATTTAATATATTGTGGATACAAGTTACTCATTGATAAATGCTTAACCAATATTTCC
TCACCA

hide sequence

RefSeq Acc Id:

XR_002345383

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	61,929,626 - 61,941,954 (+)	NCBI

Sequence:

show sequence

GTTGAGCTTGGGGCACGAGAGCAAGAAGGCTCGAGAGGAGGCAGCCGTTGTCTTCAACGCACAA
AGGCGGTGCTGGCGTTCGGCAGCGACGCCGAGGGTAACCCGATTCTGGGTCGGGGGCAGGGATG
CCTGGGTCCCGACCTGGTCCTCCGCTCCCCGCCCCTCTCAGCCCTCAGACTCCGATGGCGGCGG
CCGCGCGGAGGGTCCCGGTTCAGGTAAACGCTCGTCCTCTAGACGCTCAGCCCCTCGGACACTC
AAGGGCCCGCTGACCGTCCCCTGCTCAAGCACCTGGGCCCAGGTCTGTAGGAGCATGTGGGTGG
GGGTCCCCATTTCTGCCAGCGAGTGTGATGGGGTGTGGCAGGGGCTTACAGGCCGAGGGACCGG
CAAAATCAAAGCCTTGGGGCAGTTACTCCACTCGGAGTCTTACCTCGAGGTCTGTCTCAGCTGC
GCACAGAGCCGCTTCTGAGGGGACGAGACACACGTGAAAAGGCAGCGCGAGCAGCGGGGACCTT
CGTTCTGAGGCTGCTGGTGGCCGCGAAGGGTTGTGACTAAACGGAGGGCTCAACCTATGTTTCA
GTTTTCCAAAGGCTTCTCAGGGAAAAACAGACTGGGATGGGGGTGATGAAAGGTCTCCCTATAG
GAAGTCAGTACGACAGACTAATAGTTCGGGGGCGGGGGGCTGGGCTTTTGCTGGTGGTTAGAGA
CGGGGAGGAATGATCAACTCTCCAATGGGTTTTAAAAACTCAACAGACAGGATTTCTTACCGCA
CCAGACGTCGCTCTGAAAAAGTAGGGATTTTTGGTTTGCACTTTTGCTTCTTGTTTCCTGAACA
CCTGCAAGAGTGGAGCTGGGGGATTCAGTGCAGGGAGCCCGTTTCGGGGACTAGATTTTGTACA
TGGTAACCCTGAGGTGTCCCAAGTGTCACGTGACCTATTGGGTTCTGGGGAGGGATCTGGGCTG
AATATACCCAGGGGATGGTGAGTGGTGGCCTGGCCCAGAGCAAGTCCTGGGGCTCATATTTAGG
AGGGAGAATCTTTATGTTGTTCTCTCAGATAAACTTGGAGGGTGGGATTGCCTCCAAAGGGGCG
TATTCCTGTGCTGTGAAGTGGTTCTGGCTGGAGTGTGGAGGAATGGAGGCTTATAGGGTTTAAG
AATCCAGGACTCTGATTCAGTCGTGCAGATTTGCCACTCCAGGCTCAGCGGGGACTCATTTCCA
CTCCTGTTAGAGAAAAAGGGACAAGTGACCTTTGAGGACGTGGCTGTCTGCTTCTCACAGGAGG
AGTGGGGGCTCCTTGATGAAACCCAGAGGCTCCTGTACCGCAGTGTGATGCTGGAGACCTTCTC
ACTGATGGCCTCTCTGGGACTCACATCTTCCAGGACGCATGACATTTCTCAGCTGGAGCGGTGG
GGAGAGCCCTTTCTGTCTGCCAGTGGAGCCATGCGTGCAACCAGGCCAACAGGTTGTTGGCATG
GAGTGCAGGCTGAGGAGGCCCCATCCAAGCAGAGTGTTTACGCAGGAGTGCTCAGAGCAAAGCT
TCACCAACACCAGCAGCTGAGCTCTAGAGAGAAACCTGTAAGAGGAGAAGAGGGTGGGAAGCAC
TCCCCAACGGGCTCTGGTCTCCTCAGGCATCAAGTGGCTCAGAGCAGAGGGGAGCCACACAGGA
GCACTGAAAGCACAGAGGATTTTCACCCAGGAAAAAGGCATTACAGATGCAGTGAATGTGGGAA
AGCCTTTGGTCAGAAATACTTACTTGTTCAGCACCAAAGACTACACACTGGAGAAAAGCCTTAT
GAATGCAGTGAATGTGGGAAATTATTTAGCCATAAATCCAACCTTTTTATACACCAAATAGTGC
ACACTGGTGAAAGGCCTTATGGGTGTAATGAATGTGGAAAATCCTTTAGTCGCAATGCTGACCT
CATACAACACCGGAGAGTTCACACTGGAGAAAAGCCTTTTACATGCAGTGAATGTGGAAAAGCC
TTCAGGCATAATTCCACACTAGTCCAGCATCACAGAATCCACACTGGAGTAAGGCCTTATGAGT
GCAGTGAATGTGGAAAATTCTTTAGCTTTAACTCAAGCCTCATGAAACATCAGAGAGTTCACAC
TGGAGAAAGACCTTACAAATGCAGTGAATGTGGGAAGTTCTATAGCCACAAGTCAAGCCTTATT
AATCACTGGCGAATTCACACTGGGGAAAGACCTTATGAGTGCAGTGAATGTGGAAAATTTTTTA
GCCAAAGCTCTAGTCTCATGCAGCACCGAAAAGTTCACACTGGAGAAAAGCCTTTTAAATGCGA
TGAATGTGGAAGATTGTTTAGTGAGAATTCTAGCCTCGTTAAACACCAGAGGGTTCACACTGGA
GCCAGACCTTACGAGTGCAGGGAATGTGGGAAATTCTTCCGCCATAGCTCCAGCCTTGTCAAAC
ATCGGAGGATTCACACTGGAGAAATGCCTTATGAGTGTAGCAACTGTGGGAAATCATTTAGCCA
GCGCTTCAACCTCATTCAACACCAGAAAATTCACAGTGGAGAACAATCTTGAATGTAACTAATG
TGGAAAAGCCTTTAACCAAAGGTCTGTGCCAGTTCAGCAACAGAAACTTCACAACCCAGACAAG
CCTTATGAATACAGGATGTGAAGAAAGGTTTCAGCCAAAGGCTTAACCCTGTTTGGCACCAGTA
AGTTCAGACTGGAGAAAGGCCTCAAGAGTACAGGGCATGTCTCTGTCATACCATAAGCTTACAG
AAGCTTGAAGAGTAGCATTTAATGAGTGAGCCAACAATTGACTGTCACTCATCCTGACACACAC
TGGAGCAGGATGAGAACTGCTGACATACTGCCCCTCCTGAGAGGCTAGTCCACTGCCTGCCATC
TCAGAGAGAGGGAGCCCTGTAACCTTGGCTGCATCAGTCCAGAATGGAGTTTCCATCTCTTGAG
TTTGGAGCAAGGGGAGGGGAGGATGTGTGGTCTTGGTTCAGATGTGACTGTCTCTTGCTGTTCT
TACTGGAATATTAGGTTTTCTTAAATAAACGTTTCTTCATTTGCTGTTATCCTTAGGATCATTT
CCAGAGGCATTAAATGGTGTTTTTATGATTTTCACCAGTTTCACTGGGAAGCAGGCCTGCAAAG
TTCCTCACACTGTCGTGCTGGAAGTTGATCCAAACATTTAACTTCTTCAGAACTGGCCACTCTG
TGTCTTAAATGGATATGCCATTTCGCATTTCTTCCTGGAGTGTATTAGATTTCCAGTTTCTTCA
TTCTTGCTGACTTTTGTATGTAAGACATTGGCCATTCATTTTAGCCATTCTAGTAGATGTGTAG
TAGGATTTTATTATGGTTTTAATTTGCATTTCCCTAAAGACTCAGTGTTGAGTTTTTCTCCCTG
TGTGTTTGCCATTCATATATCTTCTTTAGTGAATTATTTGTTCAAAGTTTTTTGCCTACTATTA
AAATAATTGTCCTGCAATTTAATATATTGTGGATACAAGTTACTCATTGATAAATGCTTAACCA
ATATTTCCTCACCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020952989	(Get FASTA)	NCBI Sequence Viewer
	XP_020952990	(Get FASTA)	NCBI Sequence Viewer
	XP_020952991	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000037823
	ENSSSCP00000037823.2
	ENSSSCP00005036560.1
	ENSSSCP00005036635.1
	ENSSSCP00015001442.1
	ENSSSCP00015001448.1
	ENSSSCP00025004230.1
	ENSSSCP00025004361.1
	ENSSSCP00025004364.1
	ENSSSCP00025004367.1
	ENSSSCP00030008486.1
	ENSSSCP00030008489.1
	ENSSSCP00035016365.1
	ENSSSCP00035016367.1
	ENSSSCP00035016371.1
	ENSSSCP00035016374.1
	ENSSSCP00035016375.1
	ENSSSCP00040020676.1
	ENSSSCP00040020694.1
	ENSSSCP00040020706.1
	ENSSSCP00045015889.1
	ENSSSCP00045015897.1
	ENSSSCP00050011896.1
	ENSSSCP00050011903.1
	ENSSSCP00050011908.1
	ENSSSCP00055047180.1
	ENSSSCP00055047186.1
	ENSSSCP00060019579.1
	ENSSSCP00060019581.1
	ENSSSCP00060019582.1
	ENSSSCP00065018315.1
	ENSSSCP00065018319.1
	ENSSSCP00065018321.1
	ENSSSCP00065018329.1
	ENSSSCP00065018333.1
	ENSSSCP00070003810.1
	ENSSSCP00070004805.1
	ENSSSCP00070004859.1
	ENSSSCP00070004895.1

RefSeq Acc Id:	XP_020952989 ⟸ XM_021097330
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1SRV1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGGTSGVALGSVLPIRASGNLVLSLGHESKKAREEAAVVFNAQRRCWRSAATPRVTRFWVGGRD AWVPTWSSAPRPSQPSDSDGGGRAEGPGSGKRSSSRRSAPRTLKGPLTVPCSSTWAQGQVTFED VAVCFSQEEWGLLDETQRLLYRSVMLETFSLMASLGLTSSRTHDISQLERWGEPFLSASGAMRA TRPTGCWHGVQAEEAPSKQSVYAGVLRAKLHQHQQLSSREKPVRGEEGGKHSPTGSGLLRHQVA QSRGEPHRSTESTEDFHPGKRHYRCSECGKAFGQKYLLVQHQRLHTGEKPYECSECGKLFSHKS NLFIHQIVHTGERPYGCNECGKSFSRNADLIQHRRVHTGEKPFTCSECGKAFRHNSTLVQHHRI HTGVRPYECSECGKFFSFNSSLMKHQRVHTGERPYKCSECGKFYSHKSSLINHWRIHTGERPYE CSECGKFFSQSSSLMQHRKVHTGEKPFKCDECGRLFSENSSLVKHQRVHTGARPYECRECGKFF RHSSSLVKHRRIHTGEMPYECSNCGKSFSQRFNLIQHQKIHSGEQS hide sequence

RefSeq Acc Id:	XP_020952990 ⟸ XM_021097331
- Peptide Label:	isoform X2
- UniProtKB:	A0A4X1SRZ2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGGTSGVALGSVLPIRASGNLVLSLGHESKKAREEAAVVFNAQRRCWRSAATPRVTRFWVGGRD AWVPTWSSAPRPSQPSDSDGGGRAEGPGSGLTSSRTHDISQLERWGEPFLSASGAMRATRPTGC WHGVQAEEAPSKQSVYAGVLRAKLHQHQQLSSREKPVRGEEGGKHSPTGSGLLRHQVAQSRGEP HRSTESTEDFHPGKRHYRCSECGKAFGQKYLLVQHQRLHTGEKPYECSECGKLFSHKSNLFIHQ IVHTGERPYGCNECGKSFSRNADLIQHRRVHTGEKPFTCSECGKAFRHNSTLVQHHRIHTGVRP YECSECGKFFSFNSSLMKHQRVHTGERPYKCSECGKFYSHKSSLINHWRIHTGERPYECSECGK FFSQSSSLMQHRKVHTGEKPFKCDECGRLFSENSSLVKHQRVHTGARPYECRECGKFFRHSSSL VKHRRIHTGEMPYECSNCGKSFSQRFNLIQHQKIHSGEQS hide sequence

RefSeq Acc Id:	XP_020952991 ⟸ XM_021097332
- Peptide Label:	isoform X3
- UniProtKB:	A0A287A1M5 (UniProtKB/TrEMBL), A0A480SWY1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPGSRPGPPLPAPLSPQTPMAAAARRVPVQGQVTFEDVAVCFSQEEWGLLDETQRLLYRSVMLE TFSLMASLGLTSSRTHDISQLERWGEPFLSASGAMRATRPTGCWHGVQAEEAPSKQSVYAGVLR AKLHQHQQLSSREKPVRGEEGGKHSPTGSGLLRHQVAQSRGEPHRSTESTEDFHPGKRHYRCSE CGKAFGQKYLLVQHQRLHTGEKPYECSECGKLFSHKSNLFIHQIVHTGERPYGCNECGKSFSRN ADLIQHRRVHTGEKPFTCSECGKAFRHNSTLVQHHRIHTGVRPYECSECGKFFSFNSSLMKHQR VHTGERPYKCSECGKFYSHKSSLINHWRIHTGERPYECSECGKFFSQSSSLMQHRKVHTGEKPF KCDECGRLFSENSSLVKHQRVHTGARPYECRECGKFFRHSSSLVKHRRIHTGEMPYECSNCGKS FSQRFNLIQHQKIHSGEQS hide sequence

RefSeq Acc Id:

ENSSSCP00000040229 ⟸ ENSSSCT00000054825

RefSeq Acc Id:

ENSSSCP00000037823 ⟸ ENSSSCT00000043187

Protein Domains

C2H2-type KRAB

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000039978	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005037076	UniProtKB/TrEMBL
	ENSSSCG00015003255	UniProtKB/TrEMBL
	ENSSSCG00025007944	UniProtKB/TrEMBL
	ENSSSCG00025008158	UniProtKB/TrEMBL
	ENSSSCG00030013878	UniProtKB/TrEMBL
	ENSSSCG00035030887	UniProtKB/TrEMBL
	ENSSSCG00040037192	UniProtKB/TrEMBL
	ENSSSCG00045013475	UniProtKB/TrEMBL
	ENSSSCG00050021332	UniProtKB/TrEMBL
	ENSSSCG00055029649	UniProtKB/TrEMBL
	ENSSSCG00060033693	UniProtKB/TrEMBL
	ENSSSCG00065031850	UniProtKB/TrEMBL
	ENSSSCG00070002473	UniProtKB/TrEMBL
	ENSSSCG00070003133	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000043187	ENTREZGENE
	ENSSSCT00000043187.3	UniProtKB/TrEMBL
	ENSSSCT00005059207.1	UniProtKB/TrEMBL
	ENSSSCT00005059328.1	UniProtKB/TrEMBL
	ENSSSCT00015004113.1	UniProtKB/TrEMBL
	ENSSSCT00015004119.1	UniProtKB/TrEMBL
	ENSSSCT00025010567.1	UniProtKB/TrEMBL
	ENSSSCT00025010850.1	UniProtKB/TrEMBL
	ENSSSCT00025010861.1	UniProtKB/TrEMBL
	ENSSSCT00025010869.1	UniProtKB/TrEMBL
	ENSSSCT00030019069.1	UniProtKB/TrEMBL
	ENSSSCT00030019075.1	UniProtKB/TrEMBL
	ENSSSCT00035040900.1	UniProtKB/TrEMBL
	ENSSSCT00035040903.1	UniProtKB/TrEMBL
	ENSSSCT00035040910.1	UniProtKB/TrEMBL
	ENSSSCT00035040917.1	UniProtKB/TrEMBL
	ENSSSCT00035040919.1	UniProtKB/TrEMBL
	ENSSSCT00040049773.1	UniProtKB/TrEMBL
	ENSSSCT00040049830.1	UniProtKB/TrEMBL
	ENSSSCT00040049863.1	UniProtKB/TrEMBL
	ENSSSCT00045023013.1	UniProtKB/TrEMBL
	ENSSSCT00045023022.1	UniProtKB/TrEMBL
	ENSSSCT00050028733.1	UniProtKB/TrEMBL
	ENSSSCT00050028746.1	UniProtKB/TrEMBL
	ENSSSCT00050028752.1	UniProtKB/TrEMBL
	ENSSSCT00055058912.1	UniProtKB/TrEMBL
	ENSSSCT00055058918.1	UniProtKB/TrEMBL
	ENSSSCT00060045694.1	UniProtKB/TrEMBL
	ENSSSCT00060045696.1	UniProtKB/TrEMBL
	ENSSSCT00060045698.1	UniProtKB/TrEMBL
	ENSSSCT00065043122.1	UniProtKB/TrEMBL
	ENSSSCT00065043128.1	UniProtKB/TrEMBL
	ENSSSCT00065043134.1	UniProtKB/TrEMBL
	ENSSSCT00065043145.1	UniProtKB/TrEMBL
	ENSSSCT00065043151.1	UniProtKB/TrEMBL
	ENSSSCT00070004636.1	UniProtKB/TrEMBL
	ENSSSCT00070005889.1	UniProtKB/TrEMBL
	ENSSSCT00070005950.1	UniProtKB/TrEMBL
	ENSSSCT00070005996.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	KRAB	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	LOC110261322	ENTREZGENE
PANTHER	IP01015P-RELATED	UniProtKB/TrEMBL
	KRAB DOMAIN C2H2 ZINC FINGER	UniProtKB/TrEMBL
	PR DOMAIN ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 419	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 711	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 747	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 8	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PROSITE	KRAB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	KRAB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF109640	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A287A1M5	ENTREZGENE
	A0A480SWY1	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1SP09_PIG	UniProtKB/TrEMBL
	A0A4X1SR58_PIG	UniProtKB/TrEMBL
	A0A4X1SRV1	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1SRZ2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0ME90_PIG	UniProtKB/TrEMBL
	A0A8D1ECC4_PIG	UniProtKB/TrEMBL
	A0A8D1HCK3_PIG	UniProtKB/TrEMBL
	A0A8D1YFF7_PIG	UniProtKB/TrEMBL
UniProt Secondary	A0A287A1M5	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar