REEP5 (receptor accessory protein 5) - Rat Genome Database

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Gene: REEP5 (receptor accessory protein 5) Sus scrofa
Analyze
Symbol: REEP5
Name: receptor accessory protein 5
RGD ID: 13930729
Description: INVOLVED IN endoplasmic reticulum membrane organization (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN junctional sarcoplasmic reticulum membrane (ortholog); sarcoplasmic reticulum membrane (ortholog); INTERACTS WITH resveratrol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: receptor expression-enhancing protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2116,845,571 - 116,886,358 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12116,845,681 - 116,886,361 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22121,468,329 - 121,507,942 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
resveratrol  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
REEP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2116,845,571 - 116,886,358 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12116,845,681 - 116,886,361 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22121,468,329 - 121,507,942 (+)NCBISscrofa10.2Sscrofa10.2susScr3
REEP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385112,876,385 - 112,922,227 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5112,876,385 - 112,922,289 (-)EnsemblGRCh38hg38GRCh38
GRCh375112,212,082 - 112,257,924 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365112,239,980 - 112,285,930 (-)NCBINCBI36Build 36hg18NCBI36
Build 345112,239,979 - 112,285,811NCBI
Celera5108,157,648 - 108,203,589 (-)NCBICelera
Cytogenetic Map5q22.2NCBI
HuRef5107,391,179 - 107,437,747 (-)NCBIHuRef
CHM1_15111,645,384 - 111,691,318 (-)NCBICHM1_1
T2T-CHM13v2.05113,386,924 - 113,432,758 (-)NCBIT2T-CHM13v2.0
Reep5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391834,477,938 - 34,508,044 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1834,477,938 - 34,507,123 (-)EnsemblGRCm39 Ensembl
GRCm381834,344,885 - 34,374,991 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1834,344,885 - 34,374,070 (-)EnsemblGRCm38mm10GRCm38
MGSCv371834,504,539 - 34,533,069 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361834,469,686 - 34,498,130 (-)NCBIMGSCv36mm8
Celera1834,796,396 - 34,824,927 (-)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.57NCBI
Reep5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81826,219,528 - 26,257,505 (-)NCBIGRCr8
mRatBN7.21825,945,375 - 25,983,271 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1825,945,381 - 25,976,509 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1826,072,793 - 26,103,921 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01826,835,714 - 26,866,958 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01826,170,617 - 26,201,861 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01827,128,462 - 27,159,693 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1827,128,464 - 27,159,693 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01826,842,001 - 26,873,146 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41826,813,889 - 26,845,178 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11826,745,661 - 26,871,790 (-)NCBI
Celera1825,686,468 - 25,716,712 (-)NCBICelera
Cytogenetic Map18p12NCBI
Reep5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554182,502,674 - 2,536,817 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554182,504,028 - 2,539,574 (+)NCBIChiLan1.0ChiLan1.0
REEP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24108,132,741 - 108,176,801 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15106,286,399 - 106,330,458 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05108,236,654 - 108,280,724 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15114,039,800 - 114,083,009 (-)NCBIpanpan1.1PanPan1.1panPan2
REEP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.136,733 - 25,840 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl38,236 - 25,824 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha31,602,460 - 1,633,739 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0343,921 - 75,278 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1337,196 - 68,444 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0336,214 - 67,530 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03199,600 - 230,984 (+)NCBIUU_Cfam_GSD_1.0
Reep5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213154,507,727 - 154,555,416 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365317,053,039 - 7,104,288 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365317,055,841 - 7,103,810 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
REEP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12316,165,233 - 16,210,082 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2316,167,557 - 16,210,050 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603462,245,545 - 62,290,681 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Reep5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474330,690,350 - 30,729,785 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474330,690,339 - 30,729,229 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in REEP5
1885 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000024663   ⟹   ENSSSCP00000027111
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2116,845,571 - 116,886,358 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000069630   ⟹   ENSSSCP00000072745
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2116,846,665 - 116,886,358 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000082401   ⟹   ENSSSCP00000066881
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2116,845,571 - 116,883,762 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000083195   ⟹   ENSSSCP00000071405
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2116,845,571 - 116,879,036 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000084093   ⟹   ENSSSCP00000065434
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2116,847,021 - 116,885,343 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000095384   ⟹   ENSSSCP00000080886
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2116,845,571 - 116,878,495 (+)Ensembl
RefSeq Acc Id: XM_003480887   ⟹   XP_003480935
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12116,845,681 - 116,886,361 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003480935   ⟸   XM_003480887
- UniProtKB: F1RLG5 (UniProtKB/TrEMBL),   A0A8D1SAX9 (UniProtKB/TrEMBL),   A0A4X1U2A9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000065434   ⟸   ENSSSCT00000084093
RefSeq Acc Id: ENSSSCP00000027111   ⟸   ENSSSCT00000024663
RefSeq Acc Id: ENSSSCP00000071405   ⟸   ENSSSCT00000083195
RefSeq Acc Id: ENSSSCP00000072745   ⟸   ENSSSCT00000069630
RefSeq Acc Id: ENSSSCP00000066881   ⟸   ENSSSCT00000082401
RefSeq Acc Id: ENSSSCP00000080886   ⟸   ENSSSCT00000095384


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000022048 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015076309 UniProtKB/TrEMBL
  ENSSSCG00025043787 UniProtKB/TrEMBL
  ENSSSCG00035015716 UniProtKB/TrEMBL
  ENSSSCG00040069337 UniProtKB/TrEMBL
  ENSSSCG00045024631 UniProtKB/TrEMBL
  ENSSSCG00050061424 UniProtKB/TrEMBL
  ENSSSCG00055027203 UniProtKB/TrEMBL
  ENSSSCG00060021038 UniProtKB/TrEMBL
  ENSSSCG00065013859 UniProtKB/TrEMBL
  ENSSSCG00070013610 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000024663 ENTREZGENE
  ENSSSCT00000024663.4 UniProtKB/TrEMBL
  ENSSSCT00000082401.2 UniProtKB/TrEMBL
  ENSSSCT00000083195.2 UniProtKB/TrEMBL
  ENSSSCT00000084093.2 UniProtKB/TrEMBL
  ENSSSCT00000095384.1 UniProtKB/TrEMBL
  ENSSSCT00015102942.1 UniProtKB/TrEMBL
  ENSSSCT00025059441.1 UniProtKB/TrEMBL
  ENSSSCT00035020046.1 UniProtKB/TrEMBL
  ENSSSCT00040094947.1 UniProtKB/TrEMBL
  ENSSSCT00045041965.1 UniProtKB/TrEMBL
  ENSSSCT00050083702.1 UniProtKB/TrEMBL
  ENSSSCT00055053796.1 UniProtKB/TrEMBL
  ENSSSCT00060028526.1 UniProtKB/TrEMBL
  ENSSSCT00065018446.1 UniProtKB/TrEMBL
  ENSSSCT00065018449.1 UniProtKB/TrEMBL
  ENSSSCT00070026543.1 UniProtKB/TrEMBL
InterPro TB2_DP1_HVA22 UniProtKB/TrEMBL
KEGG Report ssc:100516959 UniProtKB/TrEMBL
NCBI Gene REEP5 ENTREZGENE
PANTHER PTHR12300 UniProtKB/TrEMBL
  RECEPTOR EXPRESSION-ENHANCING PROTEIN 5 UniProtKB/TrEMBL
Pfam TB2_DP1_HVA22 UniProtKB/TrEMBL
UniProt A0A4X1U2A9 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QKS5_PIG UniProtKB/TrEMBL
  A0A5G2QY56_PIG UniProtKB/TrEMBL
  A0A5G2RB75_PIG UniProtKB/TrEMBL
  A0A5G2RDZ0_PIG UniProtKB/TrEMBL
  A0A8D1SAX9 ENTREZGENE, UniProtKB/TrEMBL
  F1RLG5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92201 ENTREZGENE