BLNK (B cell linker) - Rat Genome Database

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Gene: BLNK (B cell linker) Sus scrofa
Analyze
Symbol: BLNK
Name: B cell linker
RGD ID: 13928582
Description: ENCODES a protein that exhibits enzyme binding (inferred); lipid binding (inferred); molecular condensate scaffold activity (inferred); INVOLVED IN B cell receptor signaling pathway (inferred); cell surface receptor protein tyrosine kinase signaling pathway (inferred); intracellular signal transduction (inferred); PARTICIPATES IN phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH agammaglobulinemia (ortholog); agammaglobulinemia 4 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: B-cell linker protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14107,625,803 - 107,715,364 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114107,630,477 - 107,715,421 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214117,265,086 - 117,349,989 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:30032202  


Genomics

Comparative Map Data
BLNK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14107,625,803 - 107,715,364 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114107,630,477 - 107,715,421 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214117,265,086 - 117,349,989 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BLNK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381096,189,171 - 96,271,569 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1096,189,171 - 96,271,587 (-)EnsemblGRCh38hg38GRCh38
GRCh371097,948,927 - 98,031,326 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361097,941,445 - 98,021,316 (-)NCBINCBI36Build 36hg18NCBI36
Build 341097,941,446 - 98,021,316NCBI
Celera1091,692,656 - 91,772,534 (-)NCBICelera
Cytogenetic Map10q24.1NCBI
HuRef1091,579,452 - 91,659,253 (-)NCBIHuRef
CHM1_11098,233,338 - 98,313,206 (-)NCBICHM1_1
T2T-CHM13v2.01097,068,476 - 97,150,877 (-)NCBIT2T-CHM13v2.0
Blnk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391940,917,371 - 40,982,664 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1940,917,371 - 40,982,978 (-)EnsemblGRCm39 Ensembl
GRCm381940,928,927 - 40,994,221 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1940,928,927 - 40,994,535 (-)EnsemblGRCm38mm10GRCm38
MGSCv371941,003,417 - 41,069,025 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361940,982,238 - 41,047,846 (-)NCBIMGSCv36mm8
Celera1941,731,720 - 41,797,451 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1934.26NCBI
Blnk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81249,703,064 - 249,770,533 (-)NCBIGRCr8
mRatBN7.21239,753,640 - 239,821,113 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1239,753,648 - 239,821,113 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1247,895,953 - 247,963,478 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01254,593,052 - 254,660,575 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01247,246,078 - 247,313,603 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01260,187,023 - 260,254,490 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1260,186,967 - 260,254,600 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01267,630,219 - 267,697,917 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41246,091,335 - 246,165,075 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1235,596,883 - 235,664,334 (-)NCBICelera
Cytogenetic Map1q54NCBI
Blnk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555072,397,400 - 2,466,788 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555072,398,694 - 2,466,461 (-)NCBIChiLan1.0ChiLan1.0
BLNK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28108,096,234 - 108,231,100 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110108,101,552 - 108,236,505 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01092,803,408 - 92,936,868 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11096,310,764 - 96,391,067 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1096,316,103 - 96,391,067 (-)Ensemblpanpan1.1panPan2
BLNK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1289,622,438 - 9,700,335 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl289,622,752 - 9,732,639 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha289,807,140 - 9,884,900 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0289,893,624 - 9,971,969 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl289,893,992 - 9,971,860 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1289,602,489 - 9,652,695 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0289,662,351 - 9,745,957 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0289,805,622 - 9,883,362 (-)NCBIUU_Cfam_GSD_1.0
Blnk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721337,181,439 - 37,250,884 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366363,220,554 - 3,289,588 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366363,220,554 - 3,290,054 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BLNK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1989,345,040 - 89,426,741 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl989,345,725 - 89,401,375 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604850,221,538 - 50,310,749 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Blnk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247377,565,169 - 7,681,102 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BLNK
1693 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 2 5 2 2 3
Low 2 2 3 2 21 2 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000011493   ⟹   ENSSSCP00000011192
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14107,630,477 - 107,715,354 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000075374   ⟹   ENSSSCP00000063770
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14107,625,803 - 107,715,359 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000079366   ⟹   ENSSSCP00000062717
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14107,680,911 - 107,715,364 (-)Ensembl
RefSeq Acc Id: XM_001928233   ⟹   XP_001928268
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114107,630,477 - 107,715,421 (-)NCBI
Sequence:
RefSeq Acc Id: XP_001928268   ⟸   XM_001928233
- UniProtKB: A0A480F4D4 (UniProtKB/TrEMBL),   A0A4X1UGW7 (UniProtKB/TrEMBL),   A0A0B8S0B4 (UniProtKB/TrEMBL),   A0A8D0MR69 (UniProtKB/TrEMBL),   A0A8D0W3D3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000063770   ⟸   ENSSSCT00000075374
RefSeq Acc Id: ENSSSCP00000011192   ⟸   ENSSSCT00000011493
RefSeq Acc Id: ENSSSCP00000062717   ⟸   ENSSSCT00000079366
Protein Domains
SH2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010504 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005045963 UniProtKB/TrEMBL
  ENSSSCG00015011806 UniProtKB/TrEMBL
  ENSSSCG00025067383 UniProtKB/TrEMBL
  ENSSSCG00030024604 UniProtKB/TrEMBL
  ENSSSCG00035064559 UniProtKB/TrEMBL
  ENSSSCG00040042109 UniProtKB/TrEMBL
  ENSSSCG00045007456 UniProtKB/TrEMBL
  ENSSSCG00050065679 UniProtKB/TrEMBL
  ENSSSCG00055000437 UniProtKB/TrEMBL
  ENSSSCG00060040654 UniProtKB/TrEMBL
  ENSSSCG00065063670 UniProtKB/TrEMBL
  ENSSSCG00070016660 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000075374 ENTREZGENE
  ENSSSCT00000075374.1 UniProtKB/TrEMBL
  ENSSSCT00000079366.2 UniProtKB/TrEMBL
  ENSSSCT00005074426.1 UniProtKB/TrEMBL
  ENSSSCT00005074429.1 UniProtKB/TrEMBL
  ENSSSCT00005074430.1 UniProtKB/TrEMBL
  ENSSSCT00015015489.1 UniProtKB/TrEMBL
  ENSSSCT00015015542.1 UniProtKB/TrEMBL
  ENSSSCT00025092574.1 UniProtKB/TrEMBL
  ENSSSCT00025092793.1 UniProtKB/TrEMBL
  ENSSSCT00025093031.1 UniProtKB/TrEMBL
  ENSSSCT00030034310.1 UniProtKB/TrEMBL
  ENSSSCT00030034314.1 UniProtKB/TrEMBL
  ENSSSCT00030034325.1 UniProtKB/TrEMBL
  ENSSSCT00035086889.1 UniProtKB/TrEMBL
  ENSSSCT00035086899.1 UniProtKB/TrEMBL
  ENSSSCT00035086905.1 UniProtKB/TrEMBL
  ENSSSCT00040056358.1 UniProtKB/TrEMBL
  ENSSSCT00040056547.1 UniProtKB/TrEMBL
  ENSSSCT00040056721.1 UniProtKB/TrEMBL
  ENSSSCT00045012431.1 UniProtKB/TrEMBL
  ENSSSCT00045012469.1 UniProtKB/TrEMBL
  ENSSSCT00045012530.1 UniProtKB/TrEMBL
  ENSSSCT00050089453.1 UniProtKB/TrEMBL
  ENSSSCT00050089460.1 UniProtKB/TrEMBL
  ENSSSCT00055000742.1 UniProtKB/TrEMBL
  ENSSSCT00055000746.1 UniProtKB/TrEMBL
  ENSSSCT00055000753.1 UniProtKB/TrEMBL
  ENSSSCT00060055073.1 UniProtKB/TrEMBL
  ENSSSCT00065087342.1 UniProtKB/TrEMBL
  ENSSSCT00065087348.1 UniProtKB/TrEMBL
  ENSSSCT00065087373.1 UniProtKB/TrEMBL
  ENSSSCT00070032877.1 UniProtKB/TrEMBL
  ENSSSCT00070032887.1 UniProtKB/TrEMBL
  ENSSSCT00070032905.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.505.10 UniProtKB/TrEMBL
InterPro SH2 UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100152350 UniProtKB/TrEMBL
NCBI Gene BLNK ENTREZGENE
PANTHER B-CELL LINKER PROTEIN UniProtKB/TrEMBL
  SH2 DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam SH2 UniProtKB/TrEMBL
PROSITE SH2 UniProtKB/TrEMBL
SMART SH2 UniProtKB/TrEMBL
Superfamily-SCOP SSF55550 UniProtKB/TrEMBL
UniProt A0A0B8S0B4 ENTREZGENE
  A0A480F4D4 ENTREZGENE
  A0A4X1UEH6_PIG UniProtKB/TrEMBL
  A0A4X1UGW7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0M8Y1_PIG UniProtKB/TrEMBL
  A0A8D0MR69 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0W3D3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ZRG8_PIG UniProtKB/TrEMBL
UniProt Secondary A0A480F4D4 UniProtKB/TrEMBL
  A0A5G2QDL7 UniProtKB/TrEMBL
VGNC ID VGNC:85829 ENTREZGENE