SLC36A3 (solute carrier family 36 member 3) - Rat Genome Database

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Gene: SLC36A3 (solute carrier family 36 member 3) Sus scrofa
Analyze
Symbol: SLC36A3
Name: solute carrier family 36 member 3
RGD ID: 13928346
Description: ENCODES a protein that exhibits amino acid:proton symporter activity (inferred); glycine transmembrane transporter activity (inferred); L-alanine transmembrane transporter activity (inferred); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); GM2 Gangliosidosis, AB variant (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proton-coupled amino acid transporter 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1671,689,245 - 71,731,418 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11671,689,211 - 71,732,634 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21677,931,076 - 77,964,085 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SLC36A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1671,689,245 - 71,731,418 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11671,689,211 - 71,732,634 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21677,931,076 - 77,964,085 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC36A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385151,276,358 - 151,303,766 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5151,276,358 - 151,303,766 (-)EnsemblGRCh38hg38GRCh38
GRCh375150,655,919 - 150,683,327 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365150,636,516 - 150,663,520 (-)NCBINCBI36Build 36hg18NCBI36
Build 345150,636,515 - 150,663,520NCBI
Celera5146,737,294 - 146,764,697 (-)NCBICelera
Cytogenetic Map5q33.1NCBI
HuRef5145,801,307 - 145,828,710 (-)NCBIHuRef
CHM1_15150,088,704 - 150,116,096 (-)NCBICHM1_1
T2T-CHM13v2.05151,815,323 - 151,842,709 (-)NCBIT2T-CHM13v2.0
Slc36a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391155,015,641 - 55,042,548 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1155,015,641 - 55,042,534 (-)EnsemblGRCm39 Ensembl
GRCm381155,124,815 - 55,151,722 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1155,124,815 - 55,151,708 (-)EnsemblGRCm38mm10GRCm38
MGSCv371154,938,325 - 54,965,208 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361154,968,246 - 54,995,129 (-)NCBIMGSCv36mm8
Celera1159,714,741 - 59,741,405 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.13NCBI
Slc36a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81039,744,226 - 39,774,120 (-)NCBIGRCr8
mRatBN7.21039,243,531 - 39,273,433 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1039,243,595 - 39,270,567 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1043,930,408 - 43,957,509 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01043,420,482 - 43,447,590 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01038,924,187 - 38,951,294 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01040,462,752 - 40,490,259 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1040,462,701 - 40,489,808 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01040,301,365 - 40,328,409 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41040,526,553 - 40,555,551 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11040,540,176 - 40,569,174 (-)NCBI
Celera1038,581,174 - 38,608,103 (-)NCBICelera
Cytogenetic Map10q22NCBI
Slc36a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554082,400,608 - 2,423,155 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554082,395,045 - 2,423,797 (+)NCBIChiLan1.0ChiLan1.0
SLC36A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24146,507,847 - 146,541,672 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15144,647,392 - 144,680,602 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05146,703,628 - 146,774,744 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15152,704,142 - 152,731,836 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5152,704,142 - 152,731,899 (-)Ensemblpanpan1.1panPan2
SLC36A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1457,963,429 - 58,013,993 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl457,933,453 - 57,992,587 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha457,782,466 - 57,830,408 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0458,404,134 - 58,452,088 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl458,374,921 - 58,431,913 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1458,221,803 - 58,269,750 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0458,320,238 - 58,368,427 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0458,824,060 - 58,872,011 (+)NCBIUU_Cfam_GSD_1.0
Slc36a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213112,885,121 - 112,910,971 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651511,336,148 - 11,360,221 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651511,336,148 - 11,360,263 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC36A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12353,834,331 - 53,861,412 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2353,834,653 - 53,860,682 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603423,852,437 - 23,878,843 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc36a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473341,163,478 - 41,193,533 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC36A3
2412 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

hemolymphoid system nervous system respiratory system
High
Medium
Low 2
Below cutoff 1 5 1

Sequence


RefSeq Acc Id: ENSSSCT00000046387   ⟹   ENSSSCP00000031792
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1671,689,245 - 71,731,418 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000087042   ⟹   ENSSSCP00000069183
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1671,699,178 - 71,746,996 (+)Ensembl
RefSeq Acc Id: XM_021077075   ⟹   XP_020932734
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11671,698,627 - 71,732,634 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021077076   ⟹   XP_020932735
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11671,689,211 - 71,732,630 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020932734 (Get FASTA)   NCBI Sequence Viewer  
  XP_020932735 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000031792
  ENSSSCP00000031792.2
  ENSSSCP00005016089.1
  ENSSSCP00070018412.1
  ENSSSCP00070018419.1
RefSeq Acc Id: XP_020932735   ⟸   XM_021077076
- Peptide Label: isoform X2
- UniProtKB: A0A4X1TN69 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932734   ⟸   XM_021077075
- Peptide Label: isoform X1
- UniProtKB: A0A286ZK08 (UniProtKB/TrEMBL),   A0A4X1TN74 (UniProtKB/TrEMBL),   A0A8D0LK47 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000031792   ⟸   ENSSSCT00000046387
RefSeq Acc Id: ENSSSCP00000069183   ⟸   ENSSSCT00000087042

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038877 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005016749 UniProtKB/TrEMBL
  ENSSSCG00070011420 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000046387 ENTREZGENE
  ENSSSCT00000046387.3 UniProtKB/TrEMBL
  ENSSSCT00005026476.1 UniProtKB/TrEMBL
  ENSSSCT00070022242.1 UniProtKB/TrEMBL
  ENSSSCT00070022249.1 UniProtKB/TrEMBL
InterPro AA_transpt_TM UniProtKB/TrEMBL
NCBI Gene SLC36A3 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/TrEMBL
  PROTON-COUPLED AMINO ACID TRANSPORTER 3 UniProtKB/TrEMBL
Pfam Aa_trans UniProtKB/TrEMBL
UniProt A0A286ZK08 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TN69 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TN74 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LK47 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93090 ENTREZGENE