EXOC3L4 (exocyst complex component 3 like 4) - Rat Genome Database

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Gene: EXOC3L4 (exocyst complex component 3 like 4) Sus scrofa
Analyze
Symbol: EXOC3L4
Name: exocyst complex component 3 like 4
RGD ID: 13926906
Description: INVOLVED IN exocytosis (inferred); ASSOCIATED WITH autistic disorder (ortholog); Charcot-Marie-Tooth disease axonal type 2O (ortholog); Herpes Simplex Encephalitis 3 (ortholog); FOUND IN exocyst (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: exocyst complex component 3-like protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position: No map positions available.


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
exocyst  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
EXOC3L4
(Sus scrofa - pig)		 No map positions available.
EXOC3L4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814103,094,174 - 103,110,559 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14103,094,725 - 103,110,559 (+)EnsemblGRCh38hg38GRCh38
GRCh3714103,561,062 - 103,576,896 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614102,636,234 - 102,646,649 (+)NCBINCBI36Build 36hg18NCBI36
Celera1483,620,482 - 83,630,896 (+)NCBICelera
Cytogenetic Map14q32.32NCBI
HuRef1483,745,116 - 83,755,273 (+)NCBIHuRef
CHM1_114103,504,274 - 103,514,279 (+)NCBICHM1_1
T2T-CHM13v2.01497,330,672 - 97,354,998 (+)NCBIT2T-CHM13v2.0
Exoc3l4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912111,383,864 - 111,398,114 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12111,383,451 - 111,398,112 (+)EnsemblGRCm39 Ensembl
GRCm3812111,417,430 - 111,431,680 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12111,417,017 - 111,431,678 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712112,655,641 - 112,669,394 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612111,865,397 - 111,878,991 (+)NCBIMGSCv36mm8
Celera12112,607,549 - 112,621,304 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.98NCBI
Exoc3l4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86136,273,857 - 136,287,877 (+)NCBIGRCr8
mRatBN7.26130,452,680 - 130,466,684 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,452,661 - 130,466,683 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6130,622,650 - 130,636,301 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06130,918,638 - 130,932,293 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06130,282,788 - 130,296,312 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06135,866,132 - 135,880,724 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,866,739 - 135,880,721 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06144,534,910 - 144,549,565 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46136,172,535 - 136,186,059 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16136,183,474 - 136,192,244 (+)NCBI
Celera6128,009,469 - 128,022,993 (+)NCBICelera
Cytogenetic Map6q32NCBI
Exoc3l4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555382,140,485 - 2,152,290 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555382,140,599 - 2,155,781 (+)NCBIChiLan1.0ChiLan1.0
EXOC3L4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215104,255,048 - 104,265,264 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114103,471,547 - 103,481,812 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01483,716,816 - 83,732,656 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114103,530,535 - 103,545,316 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14103,535,510 - 103,545,316 (+)Ensemblpanpan1.1panPan2
EXOC3L4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1870,943,515 - 70,956,211 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl870,946,994 - 70,955,867 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha870,455,620 - 70,468,383 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0871,220,202 - 71,232,944 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl871,219,425 - 71,232,600 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1870,883,775 - 70,896,486 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0870,948,554 - 70,961,303 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0871,348,550 - 71,361,306 (+)NCBIUU_Cfam_GSD_1.0
Exoc3l4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086403,084,056 - 3,098,365 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366211,913,339 - 1,922,202 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366211,913,013 - 1,921,499 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXOC3L4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12481,072,801 - 81,086,476 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2481,073,662 - 81,086,476 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605368,262,418 - 68,297,086 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Exoc3l4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247341,583,605 - 1,590,340 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247341,583,279 - 1,594,719 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 3 1 1 1 5 13 11 1 3 4 2

Sequence


Protein Sequences
Protein RefSeqs XP_020937203 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000046545
  ENSSSCP00000046545.3
  ENSSSCP00000075304.1
  ENSSSCP00000080336.1
  ENSSSCP00045013457.1
  ENSSSCP00055036143.1
  ENSSSCP00070018713.1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036871 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00045011515 UniProtKB/TrEMBL
  ENSSSCG00055022971 UniProtKB/TrEMBL
  ENSSSCG00070011607 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000064958 ENTREZGENE
  ENSSSCT00000064958.3 UniProtKB/TrEMBL
  ENSSSCT00000092766.1 UniProtKB/TrEMBL
  ENSSSCT00000092949.1 UniProtKB/TrEMBL
  ENSSSCT00045019624.1 UniProtKB/TrEMBL
  ENSSSCT00055045350.1 UniProtKB/TrEMBL
  ENSSSCT00070022613.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.357.70 UniProtKB/TrEMBL
InterPro EXOC3/Sec6 UniProtKB/TrEMBL
  EXOC3/Sec6_C UniProtKB/TrEMBL
NCBI Gene EXOC3L4 ENTREZGENE
PANTHER EXOCYST COMPLEX COMPONENT 3-LIKE PROTEIN 4 UniProtKB/TrEMBL
  PTHR21292 UniProtKB/TrEMBL
Pfam Sec6 UniProtKB/TrEMBL
UniProt A0A287ARL3_PIG UniProtKB/TrEMBL
  A0A4X1TR29 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4F7T3_PIG UniProtKB/TrEMBL
  A0A8W4FLI4_PIG UniProtKB/TrEMBL
VGNC ID VGNC:87829 ENTREZGENE