SYT7 (synaptotagmin 7) - Rat Genome Database
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Gene: SYT7 (synaptotagmin 7) Sus scrofa
Analyze
Symbol: SYT7
Name: synaptotagmin 7
RGD ID: 13926238
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); calmodulin binding (ortholog); INVOLVED IN calcium ion regulated lysosome exocytosis (ortholog); calcium ion-regulated exocytosis of neurotransmitter (ortholog); calcium-dependent activation of synaptic vesicle fusion (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; insulin secretion pathway; FOUND IN axon terminus (ortholog); dendrite (ortholog); dense core granule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: synaptotagmin-7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl29,947,925 - 10,012,521 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.129,947,962 - 10,012,713 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.229,513,096 - 9,563,737 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
SYT7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl29,947,925 - 10,012,521 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.129,947,962 - 10,012,713 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.229,513,096 - 9,563,737 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYT7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1161,515,313 - 61,581,148 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1161,513,714 - 61,581,148 (-)EnsemblGRCh38hg38GRCh38
GRCh381161,513,714 - 61,588,404 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371161,281,186 - 61,348,548 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361161,039,361 - 61,104,874 (-)NCBINCBI36hg18NCBI36
Build 341161,039,361 - 61,104,874NCBI
Celera1158,618,148 - 58,683,697 (-)NCBI
Cytogenetic Map11q12.2NCBI
HuRef1157,608,716 - 57,651,861 (-)NCBIHuRef
CHM1_11161,164,220 - 61,231,379 (-)NCBICHM1_1
Syt7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391910,366,142 - 10,430,545 (+)NCBIGRCm39mm39
GRCm39 Ensembl1910,366,454 - 10,430,544 (+)Ensembl
GRCm381910,388,802 - 10,453,181 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1910,389,090 - 10,453,180 (+)EnsemblGRCm38mm10GRCm38
MGSCv371910,463,580 - 10,527,671 (+)NCBIGRCm37mm9NCBIm37
MGSCv361910,456,528 - 10,515,489 (+)NCBImm8
Celera1911,085,012 - 11,149,518 (+)NCBICelera
Cytogenetic Map19ANCBI
Syt7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21207,031,369 - 207,093,787 (+)NCBI
Rnor_6.0 Ensembl1226,435,979 - 226,493,377 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01226,435,816 - 226,498,008 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01233,382,523 - 233,445,604 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,876,675 - 212,935,373 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11213,035,183 - 213,093,803NCBI
Celera1204,526,212 - 204,583,576 (+)NCBICelera
Cytogenetic Map1q43NCBI
Syt7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555116,051,386 - 6,093,651 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555116,051,392 - 6,093,651 (+)NCBIChiLan1.0ChiLan1.0
SYT7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11160,175,403 - 60,242,375 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1160,175,403 - 60,242,375 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01156,814,694 - 56,880,439 (-)NCBIMhudiblu_PPA_v0panPan3
SYT7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1854,861,754 - 54,921,367 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11854,863,072 - 54,926,121 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Syt7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365811,516,199 - 1,557,992 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYT7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1112,267,591 - 12,333,181 (+)NCBI
ChlSab1.1 Ensembl112,267,685 - 12,333,185 (+)Ensembl
Syt7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624926722,201 - 765,834 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 7
Low 8 2 3 1 16 2 1 1
Below cutoff 2 2 4 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000023036   ⟹   ENSSSCP00000022629
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl29,947,925 - 10,012,496 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000038474   ⟹   ENSSSCP00000048569
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl29,948,088 - 10,012,521 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000047036   ⟹   ENSSSCP00000041089
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl29,947,925 - 10,012,496 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000053866   ⟹   ENSSSCP00000057098
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl29,948,088 - 10,012,521 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000057836   ⟹   ENSSSCP00000056771
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl29,973,505 - 10,012,521 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000071199   ⟹   ENSSSCP00000066853
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl29,973,505 - 10,012,353 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000074178   ⟹   ENSSSCP00000060057
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl29,973,505 - 10,012,521 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000078803   ⟹   ENSSSCP00000072488
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl29,973,505 - 10,012,521 (+)Ensembl
RefSeq Acc Id: XM_021082925   ⟹   XP_020938584
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.129,975,165 - 10,012,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021082926   ⟹   XP_020938585
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.129,947,962 - 10,012,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021082927   ⟹   XP_020938586
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.129,947,962 - 10,012,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021082928   ⟹   XP_020938587
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.129,947,962 - 10,012,713 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021082929   ⟹   XP_020938588
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.129,947,962 - 10,012,713 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020938587   ⟸   XM_021082928
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020938586   ⟸   XM_021082927
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020938585   ⟸   XM_021082926
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020938588   ⟸   XM_021082929
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020938584   ⟸   XM_021082925
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSSSCP00000072488   ⟸   ENSSSCT00000078803
RefSeq Acc Id: ENSSSCP00000060057   ⟸   ENSSSCT00000074178
RefSeq Acc Id: ENSSSCP00000041089   ⟸   ENSSSCT00000047036
RefSeq Acc Id: ENSSSCP00000022629   ⟸   ENSSSCT00000023036
RefSeq Acc Id: ENSSSCP00000066853   ⟸   ENSSSCT00000071199
RefSeq Acc Id: ENSSSCP00000057098   ⟸   ENSSSCT00000053866
RefSeq Acc Id: ENSSSCP00000048569   ⟸   ENSSSCT00000038474
RefSeq Acc Id: ENSSSCP00000056771   ⟸   ENSSSCT00000057836
Protein Domains
C2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021906 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070025261 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000022629 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000041089 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000048569 UniProtKB/TrEMBL
  ENSSSCP00000056771 UniProtKB/TrEMBL
  ENSSSCP00000057098 UniProtKB/TrEMBL
  ENSSSCP00000060057 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000066853 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000072488 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070042705 UniProtKB/TrEMBL
  ENSSSCP00070042706 UniProtKB/TrEMBL
  ENSSSCP00070042713 UniProtKB/TrEMBL
  ENSSSCP00070042714 UniProtKB/TrEMBL
  ENSSSCP00070042716 UniProtKB/TrEMBL
  ENSSSCP00070042717 UniProtKB/TrEMBL
  ENSSSCP00070042719 UniProtKB/TrEMBL
  ENSSSCP00070042722 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023036 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000038474 UniProtKB/TrEMBL
  ENSSSCT00000047036 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000053866 UniProtKB/TrEMBL
  ENSSSCT00000057836 UniProtKB/TrEMBL
  ENSSSCT00000071199 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000074178 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000078803 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070050526 UniProtKB/TrEMBL
  ENSSSCT00070050528 UniProtKB/TrEMBL
  ENSSSCT00070050538 UniProtKB/TrEMBL
  ENSSSCT00070050539 UniProtKB/TrEMBL
  ENSSSCT00070050541 UniProtKB/TrEMBL
  ENSSSCT00070050543 UniProtKB/TrEMBL
  ENSSSCT00070050544 UniProtKB/TrEMBL
  ENSSSCT00070050547 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  C2A_Synaptotagmin-7 UniProtKB/TrEMBL
  C2B_Synaptotagmin-7 UniProtKB/TrEMBL
  Synaptotagmin UniProtKB/TrEMBL
  Synaptotagmin7 UniProtKB/TrEMBL
NCBI Gene SYT7 ENTREZGENE
PANTHER PTHR10024:SF358 UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/TrEMBL
PRINTS C2DOMAIN UniProtKB/TrEMBL
  SYNAPTOTAGMN UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/TrEMBL
SMART SM00239 UniProtKB/TrEMBL
UniProt A0A287AAV6_PIG UniProtKB/TrEMBL
  A0A287AWQ2_PIG UniProtKB/TrEMBL
  A0A287BJR9_PIG UniProtKB/TrEMBL
  A0A287BKH6_PIG UniProtKB/TrEMBL
  A0A4X1VH25_PIG UniProtKB/TrEMBL
  A0A4X1VH36_PIG UniProtKB/TrEMBL
  A0A4X1VH40_PIG UniProtKB/TrEMBL
  A0A4X1VL40_PIG UniProtKB/TrEMBL
  A0A4X1VLL5_PIG UniProtKB/TrEMBL
  A0A4X1VMN6_PIG UniProtKB/TrEMBL
  A0A4X1VNV4_PIG UniProtKB/TrEMBL
  A0A4X1VNW0_PIG UniProtKB/TrEMBL
  A0A5G2QP47_PIG UniProtKB/TrEMBL
  A0A5G2R842_PIG UniProtKB/TrEMBL
  A0A5G2R8B6_PIG UniProtKB/TrEMBL
  I3LEZ0_PIG UniProtKB/TrEMBL
VGNC ID VGNC:100868 ENTREZGENE