C13H3orf84 (chromosome 13 C3orf84 homolog) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: C13H3orf84 (chromosome 13 C3orf84 homolog) Sus scrofa
Analyze
Symbol: C13H3orf84
Name: chromosome 13 C3orf84 homolog
RGD ID: 13926054
Description: ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: uncharacterized protein C3orf84 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,781,278 - 31,792,629 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,780,619 - 31,790,704 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,011,821 - 35,023,160 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
C13H3orf84
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,781,278 - 31,792,629 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,780,619 - 31,790,704 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,011,821 - 35,023,160 (-)NCBISscrofa10.2Sscrofa10.2susScr3
C3orf84
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl349,177,634 - 49,191,858 (-)EnsemblGRCh38hg38GRCh38
GRCh38349,177,539 - 49,192,684 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37349,215,067 - 49,229,291 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,190,073 - 49,204,114 (-)NCBINCBI36hg18NCBI36
Celera349,172,338 - 49,184,925 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef349,273,028 - 49,287,244 (-)NCBIHuRef
CHM1_1349,167,840 - 49,182,055 (-)NCBICHM1_1
BC048562
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,313,681 - 108,323,282 (+)NCBIGRCm39mm39
GRCm39 Ensembl9108,313,681 - 108,323,285 (+)Ensembl
GRCm389108,436,482 - 108,446,083 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,436,482 - 108,446,086 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,338,813 - 108,348,414 (+)NCBIGRCm37mm9NCBIm37
MGSCv369108,294,585 - 108,304,189 (+)NCBImm8
Celera9108,045,624 - 108,055,271 (+)NCBICelera
Cytogenetic Map9F2NCBI
LOC680045
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28109,131,138 - 109,140,784 (+)NCBI
Rnor_6.0 Ensembl8117,221,367 - 117,231,029 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08117,214,999 - 117,231,024 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08116,565,953 - 116,575,596 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,431,733 - 108,441,366 (+)ENTREZGENECelera
Cytogenetic Map8q32NCBI
CUNH3orf84
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,163,353 - 1,198,237 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,163,399 - 1,172,197 (-)NCBIChiLan1.0ChiLan1.0
C3H3orf84
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,180,907 - 50,195,215 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,180,907 - 50,195,215 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,100,962 - 49,115,215 (-)NCBIMhudiblu_PPA_v0panPan3
C20H3orf84
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2040,012,854 - 40,021,981 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12040,012,730 - 40,021,983 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CUNH3orf84
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936529872,150 - 884,123 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUNH3orf84
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,579,771 - 10,594,148 (-)NCBI
ChlSab1.1 Ensembl2210,579,776 - 10,593,388 (-)Ensembl
CUNH3orf84
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,187,956 - 3,198,064 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 7 3 3 5 2 21 1 3 2
Below cutoff 2 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000012458   ⟹   ENSSSCP00000012133
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1331,781,278 - 31,792,629 (-)Ensembl
RefSeq Acc Id: XM_021068735   ⟹   XP_020924394
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11331,780,619 - 31,790,704 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020924394 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020924394   ⟸   XM_021068735
- Sequence:
RefSeq Acc Id: ENSSSCP00000012133   ⟸   ENSSSCT00000012458
Protein Domains
HDNR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011380 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000012133 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012458 UniProtKB/TrEMBL
InterPro HDNR UniProtKB/TrEMBL
NCBI Gene C13H3orf84 ENTREZGENE
Pfam HDNR UniProtKB/TrEMBL
UniProt F1SPT2_PIG UniProtKB/TrEMBL
VGNC ID VGNC:85939 ENTREZGENE