LOC100155689 (putative olfactory receptor 10J6) - Rat Genome Database

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Gene: LOC100155689 (putative olfactory receptor 10J6) Sus scrofa
Analyze
Symbol: LOC100155689
Name: putative olfactory receptor 10J6
RGD ID: 13925725
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1490,890,488 - 90,896,616 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2498,893,306 - 98,894,235 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC100155689
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1490,890,488 - 90,896,616 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2498,893,306 - 98,894,235 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OR10J6P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381159,598,299 - 159,599,225 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1159,598,298 - 159,599,227 (+)EnsemblGRCh38hg38GRCh38
GRCh371159,568,089 - 159,569,015 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361157,834,612 - 157,835,738 (+)NCBINCBI36Build 36hg18NCBI36
Celera1132,637,484 - 132,638,410 (+)NCBICelera
Cytogenetic Map1q23.2NCBI
HuRef1130,925,154 - 130,926,062 (+)NCBIHuRef
CHM1_11160,963,582 - 160,964,508 (+)NCBICHM1_1
T2T-CHM13v2.01158,735,358 - 158,736,284 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in LOC100155689
211 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021089594   ⟹   XP_020945253
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1490,890,488 - 90,896,616 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020945253   ⟸   XM_021089594
- UniProtKB: A0A4X1VV36 (UniProtKB/TrEMBL),   A0A5G2QCC9 (UniProtKB/TrEMBL),   A0A8D1VWN5 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000054109 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015049780 UniProtKB/TrEMBL
  ENSSSCG00025005529 UniProtKB/TrEMBL
  ENSSSCG00030027751 UniProtKB/TrEMBL
  ENSSSCG00035022289 UniProtKB/TrEMBL
  ENSSSCG00040019841 UniProtKB/TrEMBL
  ENSSSCG00045003914 UniProtKB/TrEMBL
  ENSSSCG00050011751 UniProtKB/TrEMBL
  ENSSSCG00055028201 UniProtKB/TrEMBL
  ENSSSCG00060051526 UniProtKB/TrEMBL
  ENSSSCG00065022904 UniProtKB/TrEMBL
  ENSSSCG00070026992 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000077458 ENTREZGENE
  ENSSSCT00000077458.1 UniProtKB/TrEMBL
  ENSSSCT00015066234.1 UniProtKB/TrEMBL
  ENSSSCT00025007397.1 UniProtKB/TrEMBL
  ENSSSCT00030038794.1 UniProtKB/TrEMBL
  ENSSSCT00035029082.1 UniProtKB/TrEMBL
  ENSSSCT00040026771.1 UniProtKB/TrEMBL
  ENSSSCT00045006483.1 UniProtKB/TrEMBL
  ENSSSCT00050015805.1 UniProtKB/TrEMBL
  ENSSSCT00055055867.1 UniProtKB/TrEMBL
  ENSSSCT00060070128.1 UniProtKB/TrEMBL
  ENSSSCT00065030470.1 UniProtKB/TrEMBL
  ENSSSCT00070054126.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC100155689 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 10J6-RELATED UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A4X1VV36 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QCC9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1VWN5 ENTREZGENE, UniProtKB/TrEMBL