UBE2J1 (ubiquitin conjugating enzyme E2 J1) - Rat Genome Database

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Gene: UBE2J1 (ubiquitin conjugating enzyme E2 J1) Sus scrofa
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Symbol: UBE2J1
Name: ubiquitin conjugating enzyme E2 J1
RGD ID: 13925713
Description: ENCODES a protein that exhibits ubiquitin protein ligase binding (inferred); INVOLVED IN regulation of tumor necrosis factor production (ortholog); spermatid development (ortholog); ubiquitin-dependent ERAD pathway (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: UB2J1; ubiquitin-conjugating enzyme E2 J1; ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast); ubiquitin-conjugating enzyme E2, J1, U
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl157,337,079 - 57,364,390 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1157,340,622 - 57,364,263 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2164,118,514 - 64,142,161 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890  


Genomics

Comparative Map Data
UBE2J1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl157,337,079 - 57,364,390 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1157,340,622 - 57,364,263 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2164,118,514 - 64,142,161 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBE2J1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl689,326,625 - 89,352,722 (-)EnsemblGRCh38hg38GRCh38
GRCh38689,326,625 - 89,353,155 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37690,036,344 - 90,062,441 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36690,093,063 - 90,119,338 (-)NCBINCBI36hg18NCBI36
Build 34690,093,063 - 90,119,338NCBI
Celera690,454,855 - 90,481,153 (-)NCBI
Cytogenetic Map6q15NCBI
HuRef687,253,169 - 87,279,755 (-)NCBIHuRef
CHM1_1690,134,135 - 90,160,247 (-)NCBICHM1_1
Ube2j1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39433,031,380 - 33,052,367 (+)NCBIGRCm39mm39
GRCm39 Ensembl433,031,416 - 33,052,363 (+)Ensembl
GRCm38433,031,380 - 33,052,367 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl433,031,416 - 33,052,363 (+)EnsemblGRCm38mm10GRCm38
MGSCv37433,118,400 - 33,139,339 (+)NCBIGRCm37mm9NCBIm37
MGSCv36433,360,038 - 33,380,977 (+)NCBImm8
Celera432,771,962 - 32,793,005 (+)NCBICelera
Cytogenetic Map4A5NCBI
Ube2j1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2547,422,513 - 47,441,476 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl547,422,587 - 47,441,461 (+)Ensembl
Rnor_6.0548,274,387 - 48,292,699 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl548,274,477 - 48,290,658 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0552,858,636 - 52,875,428 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4549,317,881 - 49,337,258 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1549,318,023 - 49,337,593 (+)NCBI
Celera546,180,371 - 46,196,728 (+)NCBICelera
Cytogenetic Map5q21NCBI
Ube2j1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541116,074,551 - 16,091,570 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541116,076,647 - 16,091,554 (-)NCBIChiLan1.0ChiLan1.0
UBE2J1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1690,471,136 - 90,497,320 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl690,471,136 - 90,497,334 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0687,196,938 - 87,223,414 (-)NCBIMhudiblu_PPA_v0panPan3
UBE2J1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11248,542,432 - 48,570,716 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1248,545,396 - 48,571,467 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1248,349,259 - 48,378,318 (-)NCBI
ROS_Cfam_1.01249,351,242 - 49,380,336 (-)NCBI
UMICH_Zoey_3.11248,667,524 - 48,696,593 (-)NCBI
UNSW_CanFamBas_1.01248,566,337 - 48,595,404 (-)NCBI
UU_Cfam_GSD_1.01248,758,979 - 48,788,074 (-)NCBI
Ube2j1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494683,583,280 - 83,606,489 (-)NCBI
SpeTri2.0NW_0049365102,864,321 - 2,887,588 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBE2J1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11314,092,318 - 14,117,187 (-)NCBI
ChlSab1.1 Ensembl1314,090,789 - 14,116,887 (-)Ensembl
Vero_WHO_p1.0NW_023666040190,408,841 - 190,433,859 (-)NCBI
Ube2j1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247994,811,686 - 4,838,708 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 3 5 9 2 3 3
Low 2 2 14
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000004773   ⟹   ENSSSCP00000004662
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl157,338,772 - 57,358,053 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000053230   ⟹   ENSSSCP00000043208
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl157,337,079 - 57,364,390 (-)Ensembl
RefSeq Acc Id: NM_001077219   ⟹   NP_001070687
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1157,340,622 - 57,364,263 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001070687 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABI96189 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001070687   ⟸   NM_001077219
- UniProtKB: Q06AB1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000043208   ⟸   ENSSSCT00000053230
RefSeq Acc Id: ENSSSCP00000004662   ⟸   ENSSSCT00000004773
Protein Domains
UBC core


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004317 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000004662 UniProtKB/TrEMBL
  ENSSSCP00000043208 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004773 UniProtKB/TrEMBL
  ENSSSCT00000053230 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.10.110.10 UniProtKB/TrEMBL
InterPro UBQ-conjugat_E2 UniProtKB/TrEMBL
  UBQ-conjugating_enzyme/RWD UniProtKB/TrEMBL
KEGG Report ssc:768104 UniProtKB/TrEMBL
NCBI Gene UBE2J1 ENTREZGENE
Pfam UQ_con UniProtKB/TrEMBL
PROSITE UBIQUITIN_CONJUGAT_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54495 UniProtKB/TrEMBL
UniProt A0A287AH57_PIG UniProtKB/TrEMBL
  F1S0C9_PIG UniProtKB/TrEMBL
  Q06AB1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94644 ENTREZGENE