DPP3 (dipeptidyl peptidase 3) - Rat Genome Database

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Gene: DPP3 (dipeptidyl peptidase 3) Sus scrofa
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Symbol: DPP3
Name: dipeptidyl peptidase 3
RGD ID: 13925002
Description: ENCODES a protein that exhibits zinc ion binding (ortholog); INVOLVED IN protein catabolic process (ortholog); PARTICIPATES IN nuclear factor, erythroid 2 like 2 signaling pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Bardet-Biedl syndrome (ortholog); congenital muscular dystrophy-dystroglycanopathy type A13 (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl25,907,252 - 5,946,734 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.125,907,251 - 5,948,019 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.224,983,433 - 5,022,962 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)
cytosol  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DPP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl25,907,252 - 5,946,734 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.125,907,251 - 5,948,019 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.224,983,433 - 5,022,962 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DPP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,480,434 - 66,509,657 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,480,013 - 66,509,657 (+)EnsemblGRCh38hg38GRCh38
GRCh371166,247,905 - 66,277,128 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361166,004,456 - 66,033,706 (+)NCBINCBI36Build 36hg18NCBI36
Build 341166,004,470 - 66,033,700NCBI
Celera1163,568,130 - 63,597,365 (+)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1162,575,380 - 62,605,040 (+)NCBIHuRef
CHM1_11166,131,228 - 66,160,856 (+)NCBICHM1_1
T2T-CHM13v2.01166,476,691 - 66,505,896 (+)NCBIT2T-CHM13v2.0
Dpp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39194,957,257 - 4,978,315 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl194,957,257 - 4,978,315 (-)EnsemblGRCm39 Ensembl
GRCm38194,907,229 - 4,928,287 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl194,907,229 - 4,928,287 (-)EnsemblGRCm38mm10GRCm38
MGSCv37194,907,229 - 4,928,287 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36194,907,229 - 4,928,229 (-)NCBIMGSCv36mm8
Celera194,780,315 - 4,801,142 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.15NCBI
Dpp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,634,067 - 211,657,898 (-)NCBIGRCr8
mRatBN7.21202,204,683 - 202,228,501 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,204,693 - 202,228,541 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,557,769 - 210,581,666 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,650,095 - 217,673,914 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,341,122 - 210,364,944 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,166,124 - 220,189,762 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,166,127 - 220,188,541 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,097,122 - 227,120,699 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43138,286,277 - 138,288,887 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13138,191,849 - 138,194,460 (+)NCBI
Celera1199,744,187 - 199,768,442 (-)NCBICelera
Cytogenetic Map1q43NCBI
Dpp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542218,844,138 - 18,865,050 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542218,844,391 - 18,865,050 (-)NCBIChiLan1.0ChiLan1.0
DPP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,706,225 - 67,735,729 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,748,922 - 68,778,429 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,836,463 - 61,867,303 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11165,161,889 - 65,191,398 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1165,161,892 - 65,191,398 (+)Ensemblpanpan1.1panPan2
DPP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,835,739 - 50,868,777 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1850,835,735 - 50,868,682 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,444,448 - 49,477,487 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01851,874,232 - 51,907,340 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1851,874,233 - 51,907,237 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11850,975,094 - 51,008,130 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,548,646 - 50,581,735 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,338,804 - 51,371,895 (-)NCBIUU_Cfam_GSD_1.0
Dpp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,634,562 - 6,656,783 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,076,909 - 3,097,785 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,076,909 - 3,098,012 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DPP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,766,110 - 7,797,152 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl17,766,160 - 7,795,302 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,050,080 - 105,079,951 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dpp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476719,894,279 - 19,916,987 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476719,894,386 - 19,916,996 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DPP3
929 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 1
Low 7 4 3 4 2 23 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000023883   ⟹   ENSSSCP00000023170
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl25,907,252 - 5,946,043 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000025557   ⟹   ENSSSCP00000020307
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl25,907,253 - 5,946,734 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000067671   ⟹   ENSSSCP00000070620
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl25,907,252 - 5,945,374 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000071564   ⟹   ENSSSCP00000073213
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl25,907,255 - 5,946,569 (-)Ensembl
RefSeq Acc Id: XM_003353753   ⟹   XP_003353801
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.125,907,251 - 5,946,576 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005654654   ⟹   XP_005654711
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.125,907,251 - 5,948,019 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005654655   ⟹   XP_005654712
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.125,907,251 - 5,946,613 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005654656   ⟹   XP_005654713
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.125,907,251 - 5,946,540 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005654658   ⟹   XP_005654715
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.125,907,251 - 5,946,576 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082792   ⟹   XP_020938451
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.125,907,251 - 5,946,547 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082793   ⟹   XP_020938452
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.125,907,251 - 5,946,213 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005654711   ⟸   XM_005654654
- Peptide Label: isoform X1
- UniProtKB: A0A5G2RLJ6 (UniProtKB/TrEMBL),   A0A8D1Y2W8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005654712   ⟸   XM_005654655
- Peptide Label: isoform X2
- UniProtKB: A0A480T9G8 (UniProtKB/TrEMBL),   A0A8D1Y2W8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003353801   ⟸   XM_003353753
- Peptide Label: isoform X3
- UniProtKB: F1RU52 (UniProtKB/TrEMBL),   A0A8D0NGG9 (UniProtKB/TrEMBL),   A0A8D1HM77 (UniProtKB/TrEMBL),   I3LGH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005654715   ⟸   XM_005654658
- Peptide Label: isoform X3
- UniProtKB: F1RU52 (UniProtKB/TrEMBL),   A0A8D0NGG9 (UniProtKB/TrEMBL),   A0A8D1HM77 (UniProtKB/TrEMBL),   I3LGH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020938451   ⟸   XM_021082792
- Peptide Label: isoform X3
- UniProtKB: A0A8D0NGG9 (UniProtKB/TrEMBL),   F1RU52 (UniProtKB/TrEMBL),   A0A8D1HM77 (UniProtKB/TrEMBL),   I3LGH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005654713   ⟸   XM_005654656
- Peptide Label: isoform X3
- UniProtKB: F1RU52 (UniProtKB/TrEMBL),   A0A8D0NGG9 (UniProtKB/TrEMBL),   A0A8D1HM77 (UniProtKB/TrEMBL),   I3LGH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020938452   ⟸   XM_021082793
- Peptide Label: isoform X3
- UniProtKB: A0A8D0NGG9 (UniProtKB/TrEMBL),   F1RU52 (UniProtKB/TrEMBL),   A0A8D1HM77 (UniProtKB/TrEMBL),   I3LGH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000020307   ⟸   ENSSSCT00000025557
RefSeq Acc Id: ENSSSCP00000073213   ⟸   ENSSSCT00000071564
RefSeq Acc Id: ENSSSCP00000070620   ⟸   ENSSSCT00000067671
RefSeq Acc Id: ENSSSCP00000023170   ⟸   ENSSSCT00000023883


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000030415 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015035110 UniProtKB/TrEMBL
  ENSSSCG00025075535 UniProtKB/TrEMBL
  ENSSSCG00035059874 UniProtKB/TrEMBL
  ENSSSCG00040045705 UniProtKB/TrEMBL
  ENSSSCG00045017887 UniProtKB/TrEMBL
  ENSSSCG00050014392 UniProtKB/TrEMBL
  ENSSSCG00060073379 UniProtKB/TrEMBL
  ENSSSCG00065026904 UniProtKB/TrEMBL
  ENSSSCG00070010785 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023883 ENTREZGENE
  ENSSSCT00000023883.3 UniProtKB/TrEMBL
  ENSSSCT00000025557 ENTREZGENE
  ENSSSCT00000025557.4 UniProtKB/TrEMBL
  ENSSSCT00000067671.1 UniProtKB/TrEMBL
  ENSSSCT00000071564 ENTREZGENE
  ENSSSCT00000071564.2 UniProtKB/TrEMBL
  ENSSSCT00015046822.1 UniProtKB/TrEMBL
  ENSSSCT00015047151.1 UniProtKB/TrEMBL
  ENSSSCT00025104506.1 UniProtKB/TrEMBL
  ENSSSCT00025104569.1 UniProtKB/TrEMBL
  ENSSSCT00025104594.1 UniProtKB/TrEMBL
  ENSSSCT00035080265.1 UniProtKB/TrEMBL
  ENSSSCT00035080277.1 UniProtKB/TrEMBL
  ENSSSCT00035080288.1 UniProtKB/TrEMBL
  ENSSSCT00040062095.1 UniProtKB/TrEMBL
  ENSSSCT00040062253.1 UniProtKB/TrEMBL
  ENSSSCT00040062314.1 UniProtKB/TrEMBL
  ENSSSCT00045030520.1 UniProtKB/TrEMBL
  ENSSSCT00045030680.1 UniProtKB/TrEMBL
  ENSSSCT00045030820.1 UniProtKB/TrEMBL
  ENSSSCT00045030980.1 UniProtKB/TrEMBL
  ENSSSCT00050019457.1 UniProtKB/TrEMBL
  ENSSSCT00050019474.1 UniProtKB/TrEMBL
  ENSSSCT00060102045.1 UniProtKB/TrEMBL
  ENSSSCT00060102144.1 UniProtKB/TrEMBL
  ENSSSCT00060102255.1 UniProtKB/TrEMBL
  ENSSSCT00065036318.1 UniProtKB/TrEMBL
  ENSSSCT00065036338.1 UniProtKB/TrEMBL
  ENSSSCT00065036343.1 UniProtKB/TrEMBL
  ENSSSCT00070021093.1 UniProtKB/TrEMBL
  ENSSSCT00070021119.1 UniProtKB/TrEMBL
  ENSSSCT00070021200.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.540.30 UniProtKB/TrEMBL
InterPro Dipeptidyl-peptase3 UniProtKB/TrEMBL
  Peptidase_M49 UniProtKB/TrEMBL
KEGG Report ssc:100519350 UniProtKB/TrEMBL
NCBI Gene DPP3 ENTREZGENE
PANTHER DIPEPTIDYL PEPTIDASE 3 UniProtKB/TrEMBL
  PTHR23422 UniProtKB/TrEMBL
Pfam Peptidase_M49 UniProtKB/TrEMBL
PIRSF Dipeptidyl-peptidase_III UniProtKB/TrEMBL
UniProt A0A480T9G8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TMR6_PIG UniProtKB/TrEMBL
  A0A4X1TQE8_PIG UniProtKB/TrEMBL
  A0A4X1TQG7_PIG UniProtKB/TrEMBL
  A0A5G2RH47_PIG UniProtKB/TrEMBL
  A0A5G2RLJ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0NGG9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0TIK5_PIG UniProtKB/TrEMBL
  A0A8D1AED1_PIG UniProtKB/TrEMBL
  A0A8D1EQQ9_PIG UniProtKB/TrEMBL
  A0A8D1HM77 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1HMI8_PIG UniProtKB/TrEMBL
  A0A8D1HX85_PIG UniProtKB/TrEMBL
  A0A8D1Y2W8 ENTREZGENE, UniProtKB/TrEMBL
  F1RU52 ENTREZGENE, UniProtKB/TrEMBL
  I3LGH6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:87420 ENTREZGENE