SLC7A13 (solute carrier family 7 member 13) - Rat Genome Database
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Gene: SLC7A13 (solute carrier family 7 member 13) Sus scrofa
Analyze
Symbol: SLC7A13
Name: solute carrier family 7 member 13
RGD ID: 13923933
Description: ENCODES a protein that exhibits protein heterodimerization activity (ortholog); INVOLVED IN aspartate transmembrane transport (ortholog); L-cystine transport (ortholog); L-glutamate transmembrane transport (ortholog); FOUND IN apical plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: solute carrier family 7 member 13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl450,614,313 - 50,642,340 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1450,614,261 - 50,642,387 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2455,573,526 - 55,609,325 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
SLC7A13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl450,614,313 - 50,642,340 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1450,614,261 - 50,642,387 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2455,573,526 - 55,609,325 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC7A13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl886,214,063 - 86,321,146 (-)EnsemblGRCh38hg38GRCh38
GRCh38886,213,909 - 86,230,381 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37887,226,292 - 87,242,610 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36887,295,404 - 87,311,720 (-)NCBINCBI36hg18NCBI36
Build 34887,295,403 - 87,311,720NCBI
Celera883,421,171 - 83,437,487 (-)NCBI
Cytogenetic Map8q21.3NCBI
HuRef882,435,273 - 82,451,588 (-)NCBIHuRef
CHM1_1887,267,082 - 87,283,398 (-)NCBICHM1_1
Slc7a13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39419,818,727 - 19,842,213 (+)NCBIGRCm39mm39
GRCm39 Ensembl419,818,725 - 19,842,218 (+)Ensembl
GRCm38419,818,727 - 19,842,213 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl419,818,725 - 19,842,218 (+)EnsemblGRCm38mm10GRCm38
MGSCv37419,745,874 - 19,769,360 (+)NCBIGRCm37mm9NCBIm37
MGSCv36419,745,891 - 19,769,365 (+)NCBImm8
Celera419,575,900 - 19,599,881 (+)NCBICelera
Cytogenetic Map4A3NCBI
Slc7a13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2533,277,416 - 33,298,105 (+)NCBI
Rnor_6.0 Ensembl533,784,715 - 33,805,616 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0533,784,757 - 33,805,446 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0538,439,678 - 38,460,867 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4534,417,523 - 34,438,081 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1534,417,701 - 34,438,249 (+)NCBI
Celera532,365,052 - 32,385,738 (+)NCBICelera
Cytogenetic Map5q13NCBI
Slc7a13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554173,882,626 - 3,897,772 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554173,882,910 - 3,897,753 (-)NCBIChiLan1.0ChiLan1.0
SLC7A13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1884,881,504 - 84,897,628 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl884,877,438 - 84,897,628 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0882,910,285 - 82,927,127 (-)NCBIMhudiblu_PPA_v0panPan3
SLC7A13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12932,416,941 - 32,434,249 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Slc7a13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936544855,995 - 865,940 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC7A13
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1881,396,280 - 81,413,401 (-)NCBI
ChlSab1.1 Ensembl881,396,249 - 81,413,013 (-)Ensembl
Slc7a13
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247445,529,396 - 5,543,414 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system hemolymphoid system renal system respiratory system
High
Medium 2
Low
Below cutoff 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013996640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000024836   ⟹   ENSSSCP00000024029
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl450,614,313 - 50,642,340 (+)Ensembl
RefSeq Acc Id: XM_013996640   ⟹   XP_013852094
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1450,614,261 - 50,642,387 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013852094 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013852094   ⟸   XM_013996640
- Sequence:
RefSeq Acc Id: ENSSSCP00000024029   ⟸   ENSSSCT00000024836


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000022935 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000024029 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000024836 ENTREZGENE, UniProtKB/TrEMBL
InterPro AA/rel_permease1 UniProtKB/TrEMBL
NCBI Gene SLC7A13 ENTREZGENE
Pfam AA_permease_2 UniProtKB/TrEMBL
UniProt I3LIX2_PIG UniProtKB/TrEMBL
VGNC ID VGNC:93172 ENTREZGENE