EVX1 (even-skipped homeobox 1) - Rat Genome Database

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Gene: EVX1 (even-skipped homeobox 1) Sus scrofa
Analyze
Symbol: EVX1
Name: even-skipped homeobox 1
RGD ID: 13923152
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN embryo development ending in birth or egg hatching (ortholog); interneuron migration (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN axon (inferred); neuronal cell body (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox even-skipped homolog protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1845,326,710 - 45,331,368 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11845,327,711 - 45,331,204 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21849,960,837 - 49,964,997 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axon  (IEA)
neuronal cell body  (IEA)
nucleoplasm  (IEA)
nucleus  (IBA,IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
EVX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1845,326,710 - 45,331,368 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11845,327,711 - 45,331,204 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21849,960,837 - 49,964,997 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EVX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38727,242,802 - 27,247,830 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl727,242,700 - 27,250,493 (+)EnsemblGRCh38hg38GRCh38
GRCh37727,282,421 - 27,287,449 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36727,248,689 - 27,252,717 (+)NCBINCBI36Build 36hg18NCBI36
Build 34727,055,660 - 27,059,432NCBI
Celera727,271,101 - 27,275,129 (+)NCBICelera
Cytogenetic Map7p15.2NCBI
HuRef727,162,395 - 27,166,423 (+)NCBIHuRef
CHM1_1727,281,891 - 27,285,919 (+)NCBICHM1_1
T2T-CHM13v2.0727,378,788 - 27,383,816 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2727,333,351 - 27,337,379 (+)NCBI
Evx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39652,290,483 - 52,295,374 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl652,290,483 - 52,295,363 (+)EnsemblGRCm39 Ensembl
GRCm38652,313,498 - 52,318,389 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl652,313,498 - 52,318,378 (+)EnsemblGRCm38mm10GRCm38
MGSCv37652,263,492 - 52,268,372 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36652,243,076 - 52,247,956 (+)NCBIMGSCv36mm8
Celera652,834,900 - 52,839,780 (+)NCBICelera
Cytogenetic Map6B3NCBI
cM Map625.44NCBI
Evx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8482,747,192 - 82,751,569 (+)NCBIGRCr8
mRatBN7.2481,416,590 - 81,420,967 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl481,416,590 - 81,420,967 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0482,370,829 - 82,374,313 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,370,997 - 82,375,374 (+)EnsemblRnor6.0rn6Rnor6.0
Celera476,305,676 - 76,309,160 (+)NCBICelera
Cytogenetic Map4q24NCBI
Evx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541028,939,416 - 28,942,751 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541028,939,416 - 28,942,751 (+)NCBIChiLan1.0ChiLan1.0
EVX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2632,071,961 - 32,076,982 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1780,396,685 - 80,401,706 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0727,887,145 - 27,892,267 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1727,486,329 - 27,491,245 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl727,486,329 - 27,491,245 (+)Ensemblpanpan1.1panPan2
EVX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11440,416,167 - 40,422,412 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1440,418,589 - 40,423,482 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1439,847,018 - 39,853,198 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01440,354,897 - 40,361,088 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1440,356,898 - 40,362,225 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11440,468,697 - 40,474,874 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01440,153,807 - 40,159,977 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01440,512,501 - 40,518,673 (+)NCBIUU_Cfam_GSD_1.0
Evx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511884,661,027 - 84,666,323 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364783,873,109 - 3,876,784 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364783,873,007 - 3,876,784 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EVX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12131,118,911 - 31,130,186 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2131,123,397 - 31,126,792 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604273,606,380 - 73,611,963 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Evx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247393,355,578 - 3,358,947 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247393,354,191 - 3,358,961 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in EVX1
51 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

nervous system
High
Medium
Low
Below cutoff 1

Sequence


RefSeq Acc Id: ENSSSCT00000018177   ⟹   ENSSSCP00000017686
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1845,326,710 - 45,331,368 (-)Ensembl
RefSeq Acc Id: XM_003134834   ⟹   XP_003134882
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11845,327,711 - 45,331,204 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003134882   ⟸   XM_003134834
- UniProtKB: F1SHT9 (UniProtKB/TrEMBL),   A0A4X1TSU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000017686   ⟸   ENSSSCT00000018177
Protein Domains
Homeobox


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016696 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025070263 UniProtKB/TrEMBL
  ENSSSCG00030004788 UniProtKB/TrEMBL
  ENSSSCG00035059523 UniProtKB/TrEMBL
  ENSSSCG00040001606 UniProtKB/TrEMBL
  ENSSSCG00045015837 UniProtKB/TrEMBL
  ENSSSCG00050057185 UniProtKB/TrEMBL
  ENSSSCG00055018769 UniProtKB/TrEMBL
  ENSSSCG00060068514 UniProtKB/TrEMBL
  ENSSSCG00065020599 UniProtKB/TrEMBL
  ENSSSCG00070011404 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018177 ENTREZGENE
  ENSSSCT00000018177.3 UniProtKB/TrEMBL
  ENSSSCT00025096518.1 UniProtKB/TrEMBL
  ENSSSCT00030006456.1 UniProtKB/TrEMBL
  ENSSSCT00035079760.1 UniProtKB/TrEMBL
  ENSSSCT00040001891.1 UniProtKB/TrEMBL
  ENSSSCT00045026895.1 UniProtKB/TrEMBL
  ENSSSCT00050077955.1 UniProtKB/TrEMBL
  ENSSSCT00055036773.1 UniProtKB/TrEMBL
  ENSSSCT00060093529.1 UniProtKB/TrEMBL
  ENSSSCT00065027430.1 UniProtKB/TrEMBL
  ENSSSCT00070022241.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/TrEMBL
KEGG Report ssc:100518282 UniProtKB/TrEMBL
NCBI Gene EVX1 ENTREZGENE
PANTHER HOMEOBOX EVEN-SKIPPED HOMOLOG PROTEIN 1 UniProtKB/TrEMBL
  SEGMENTATION PROTEIN EVEN-SKIPPED UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
PRINTS HOMEOBOX UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A4X1TSU9 ENTREZGENE, UniProtKB/TrEMBL
  F1SHT9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:87821 ENTREZGENE