LOC110255312 (keratin, type I cytoskeletal 14) - Rat Genome Database

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Gene: LOC110255312 (keratin, type I cytoskeletal 14) Sus scrofa
Analyze
Symbol: LOC110255312 (Ensembl: KRT14)
Name: keratin, type I cytoskeletal 14 (Ensembl:keratin 14)
RGD ID: 13922101
Description: ENCODES a protein that exhibits keratin filament binding (inferred); structural molecule activity (inferred); INVOLVED IN keratinocyte differentiation (ortholog); response to ionizing radiation (ortholog); response to radiation (ortholog); ASSOCIATED WITH autosomal dominant dystrophic epidermolysis bullosa (ortholog); Breast Neoplasms (ortholog); dermatopathia pigmentosa reticularis (ortholog); FOUND IN cornified envelope (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1221,024,314 - 21,119,396 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11221,074,965 - 21,079,393 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC110255312
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1221,024,314 - 21,119,396 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11221,074,965 - 21,079,393 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KRT14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381741,582,279 - 41,586,895 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1741,582,279 - 41,586,895 (-)EnsemblGRCh38hg38GRCh38
GRCh371739,738,531 - 39,743,147 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361736,992,059 - 36,996,673 (-)NCBINCBI36Build 36hg18NCBI36
Build 341736,992,058 - 36,996,673NCBI
Celera1736,391,486 - 36,396,102 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1735,501,649 - 35,506,252 (-)NCBIHuRef
CHM1_11739,973,838 - 39,978,454 (-)NCBICHM1_1
T2T-CHM13v2.01742,437,869 - 42,442,485 (-)NCBIT2T-CHM13v2.0
Krt14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911100,093,988 - 100,098,336 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11100,093,988 - 100,098,374 (-)EnsemblGRCm39 Ensembl
GRCm3811100,203,162 - 100,207,510 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11100,203,162 - 100,207,548 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711100,064,476 - 100,068,824 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611100,019,252 - 100,023,600 (-)NCBIMGSCv36mm8
Celera11110,819,617 - 110,823,965 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1163.43NCBI
Krt14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81085,638,182 - 85,642,450 (-)NCBIGRCr8
mRatBN7.21085,137,786 - 85,142,054 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1085,066,802 - 85,171,799 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1090,155,919 - 90,159,989 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01089,654,291 - 89,658,349 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01085,046,229 - 85,050,287 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01088,118,029 - 88,122,233 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1088,055,823 - 88,122,233 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01087,910,658 - 87,914,716 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41089,144,357 - 89,148,415 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11089,158,726 - 89,162,785 (-)NCBI
Celera1083,857,265 - 83,861,323 (-)NCBICelera
Cytogenetic Map10q31NCBI
LOC100975309
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21923,398,101 - 23,402,706 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11725,288,234 - 25,292,839 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01715,730,066 - 15,734,665 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11715,948,570 - 15,953,191 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1715,948,596 - 15,953,191 (+)Ensemblpanpan1.1panPan2
KRT14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1921,190,672 - 21,195,060 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl921,156,045 - 21,265,564 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha920,652,119 - 20,656,507 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0921,911,274 - 21,915,662 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1920,697,290 - 20,701,678 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0920,963,294 - 20,967,682 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0921,067,094 - 21,071,483 (+)NCBIUU_Cfam_GSD_1.0
LOC103243443
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11664,654,988 - 64,660,327 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1664,655,807 - 64,660,319 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607735,500,284 - 35,505,086 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in LOC110255312
143 total Variants

Expression


Sequence


RefSeq Acc Id: XM_021067000   ⟹   XP_020922659
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11221,074,965 - 21,079,393 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020922659   ⟸   XM_021067000
- UniProtKB: A0A8D0XUB4 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
IF rod


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017448 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00030063747 UniProtKB/TrEMBL
  ENSSSCG00035025840 UniProtKB/TrEMBL
  ENSSSCG00035026460 UniProtKB/TrEMBL
  ENSSSCG00055012510 UniProtKB/TrEMBL
  ENSSSCG00055013289 UniProtKB/TrEMBL
  ENSSSCG00060026761 UniProtKB/TrEMBL
  ENSSSCG00065012127 UniProtKB/TrEMBL
  ENSSSCG00065012424 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000047854.3 UniProtKB/TrEMBL
  ENSSSCT00000057854 ENTREZGENE
  ENSSSCT00000057854.3 UniProtKB/TrEMBL
  ENSSSCT00000059817.3 UniProtKB/TrEMBL
  ENSSSCT00000086787.2 UniProtKB/TrEMBL
  ENSSSCT00030089418.1 UniProtKB/TrEMBL
  ENSSSCT00030089465.1 UniProtKB/TrEMBL
  ENSSSCT00030089592.1 UniProtKB/TrEMBL
  ENSSSCT00030089622.1 UniProtKB/TrEMBL
  ENSSSCT00030089667.1 UniProtKB/TrEMBL
  ENSSSCT00030089714.1 UniProtKB/TrEMBL
  ENSSSCT00030089759.1 UniProtKB/TrEMBL
  ENSSSCT00030089778.1 UniProtKB/TrEMBL
  ENSSSCT00035034107.1 UniProtKB/TrEMBL
  ENSSSCT00035034930.1 UniProtKB/TrEMBL
  ENSSSCT00035034936.1 UniProtKB/TrEMBL
  ENSSSCT00035034941.1 UniProtKB/TrEMBL
  ENSSSCT00055025403.1 UniProtKB/TrEMBL
  ENSSSCT00055026397.1 UniProtKB/TrEMBL
  ENSSSCT00055026450.1 UniProtKB/TrEMBL
  ENSSSCT00055026507.1 UniProtKB/TrEMBL
  ENSSSCT00060036246.1 UniProtKB/TrEMBL
  ENSSSCT00060036255.1 UniProtKB/TrEMBL
  ENSSSCT00060036285.1 UniProtKB/TrEMBL
  ENSSSCT00065016179.1 UniProtKB/TrEMBL
  ENSSSCT00065016565.1 UniProtKB/TrEMBL
  ENSSSCT00065016577.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  Single helix bin UniProtKB/TrEMBL
  Vasodilator-stimulated phosphoprotein UniProtKB/TrEMBL
InterPro IF_conserved UniProtKB/TrEMBL
  IF_rod_dom UniProtKB/TrEMBL
  Keratin_I UniProtKB/TrEMBL
NCBI Gene LOC110255312 ENTREZGENE
PANTHER KERATIN, TYPE I CYTOSKELETAL 14 UniProtKB/TrEMBL
  KERATIN, TYPE I CYTOSKELETAL 16 UniProtKB/TrEMBL
  KERATIN, TYPE I CYTOSKELETAL 17 UniProtKB/TrEMBL
  PTHR23239 UniProtKB/TrEMBL
Pfam Filament UniProtKB/TrEMBL
PRINTS TYPE1KERATIN UniProtKB/TrEMBL
PROSITE IF_ROD_1 UniProtKB/TrEMBL
  IF_ROD_2 UniProtKB/TrEMBL
SMART Filament UniProtKB/TrEMBL
Superfamily-SCOP Intermediate filament protein, coiled coil region UniProtKB/TrEMBL
  Prefoldin UniProtKB/TrEMBL
UniProt A0A287AEL2_PIG UniProtKB/TrEMBL
  A0A287BF12_PIG UniProtKB/TrEMBL
  A0A287BN15_PIG UniProtKB/TrEMBL
  A0A5G2QFD0_PIG UniProtKB/TrEMBL
  A0A8D0XR76_PIG UniProtKB/TrEMBL
  A0A8D0XU70_PIG UniProtKB/TrEMBL
  A0A8D0XUB4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0XUC6_PIG UniProtKB/TrEMBL
  A0A8D0XX21_PIG UniProtKB/TrEMBL
  A0A8D0ZAC1_PIG UniProtKB/TrEMBL
  A0A8D0ZE20_PIG UniProtKB/TrEMBL
  A0A8D0ZEN0_PIG UniProtKB/TrEMBL
  A0A8D1CFV1_PIG UniProtKB/TrEMBL
  A0A8D1QK63_PIG UniProtKB/TrEMBL
  A0A8D1QKA3_PIG UniProtKB/TrEMBL
  A0A8D1QRH8_PIG UniProtKB/TrEMBL
  A0A8D1UW74_PIG UniProtKB/TrEMBL
  A0A8D1UWP5_PIG UniProtKB/TrEMBL