LOC100510930 (tubulin alpha-3 chain) - Rat Genome Database

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Gene: LOC100510930 (tubulin alpha-3 chain) Sus scrofa
Analyze
Symbol: LOC100510930
Name: tubulin alpha-3 chain
RGD ID: 13921403
Description: ENCODES a protein that exhibits GTP binding (inferred); hydrolase activity (inferred); structural constituent of cytoskeleton (inferred); INVOLVED IN cytoskeleton organization (inferred); microtubule cytoskeleton organization (inferred); microtubule-based process (inferred); ASSOCIATED WITH genetic disease (ortholog); Keratoconus 9 (ortholog); FOUND IN microtubule cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11450,594,115 - 50,600,789 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,042,851 - 54,049,328 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100510930
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11450,594,115 - 50,600,789 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,042,851 - 54,049,328 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TUBA3D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382131,476,119 - 131,482,934 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2131,476,119 - 131,482,934 (+)EnsemblGRCh38hg38GRCh38
GRCh372132,233,692 - 132,240,507 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362131,950,136 - 131,956,977 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map2q21.1NCBI
HuRef2124,227,036 - 124,233,962 (+)NCBIHuRef
CHM1_12132,237,201 - 132,244,128 (+)NCBICHM1_1
T2T-CHM13v2.02131,910,887 - 131,917,702 (+)NCBIT2T-CHM13v2.0
Tuba3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396125,255,233 - 125,263,044 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6125,255,237 - 125,263,005 (-)EnsemblGRCm39 Ensembl
GRCm386125,278,270 - 125,286,081 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6125,278,274 - 125,286,042 (-)EnsemblGRCm38mm10GRCm38
MGSCv376125,228,292 - 125,236,060 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366125,243,908 - 125,251,650 (-)NCBIMGSCv36mm8
Celera6126,948,035 - 126,955,805 (-)NCBICelera
Cytogenetic Map6F3NCBI
cM Map659.32NCBI
Tuba3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84180,319,600 - 180,325,149 (+)NCBIGRCr8
mRatBN7.24178,588,779 - 178,594,328 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4178,588,779 - 178,594,326 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4184,874,407 - 184,879,962 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04180,658,915 - 180,664,470 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04179,279,330 - 179,284,885 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04179,905,154 - 179,910,703 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4179,905,116 - 179,910,704 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04244,079,934 - 244,085,483 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44183,289,130 - 183,294,679 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4167,094,233 - 167,099,782 (+)NCBICelera
Cytogenetic Map4q44NCBI
LOC608051
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,428,955 - 30,437,431 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2630,428,954 - 30,437,353 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2630,387,644 - 30,399,096 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02631,837,791 - 31,849,503 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12629,883,647 - 29,895,338 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02629,507,858 - 29,519,551 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02630,597,289 - 30,608,735 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in LOC100510930
59 total Variants

Expression


Sequence


RefSeq Acc Id: XM_003133000   ⟹   XP_003133048
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11450,594,115 - 50,600,789 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021074050   ⟹   XP_020929709
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11450,594,115 - 50,599,101 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003133048   ⟸   XM_003133000
- Peptide Label: isoform X2
- UniProtKB: A0A288CFV7 (UniProtKB/TrEMBL),   A0A8D0MRN3 (UniProtKB/TrEMBL),   A0A480KVX2 (UniProtKB/TrEMBL),   A0A8D0MNN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020929709   ⟸   XM_021074050
- Peptide Label: isoform X1
- UniProtKB: A0A8D0TES9 (UniProtKB/TrEMBL),   A0A480VSC2 (UniProtKB/TrEMBL),   A0A8X9AEM1 (UniProtKB/TrEMBL)
- Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000052117 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015012627 UniProtKB/TrEMBL
  ENSSSCG00025071200 UniProtKB/TrEMBL
  ENSSSCG00040055946 UniProtKB/TrEMBL
  ENSSSCG00050046169 UniProtKB/TrEMBL
  ENSSSCG00055026604 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011060.4 UniProtKB/TrEMBL
  ENSSSCT00000024939.4 UniProtKB/TrEMBL
  ENSSSCT00000059273 ENTREZGENE
  ENSSSCT00000059273.3 UniProtKB/TrEMBL
  ENSSSCT00015016677.1 UniProtKB/TrEMBL
  ENSSSCT00015016752.1 UniProtKB/TrEMBL
  ENSSSCT00025097791.1 UniProtKB/TrEMBL
  ENSSSCT00040075783.1 UniProtKB/TrEMBL
  ENSSSCT00050062814.1 UniProtKB/TrEMBL
  ENSSSCT00055052576.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.600 UniProtKB/TrEMBL
  3.30.1330.20 UniProtKB/TrEMBL
  3.40.50.1440 UniProtKB/TrEMBL
InterPro Alpha_tubulin UniProtKB/TrEMBL
  Tub_FtsZ_C UniProtKB/TrEMBL
  Tubulin UniProtKB/TrEMBL
  Tubulin/FtsZ_2-layer-sand-dom UniProtKB/TrEMBL
  Tubulin/FtsZ_C_sf UniProtKB/TrEMBL
  Tubulin/FtsZ_GTPase_sf UniProtKB/TrEMBL
  Tubulin_C UniProtKB/TrEMBL
  Tubulin_CS UniProtKB/TrEMBL
  Tubulin_FtsZ_GTPase UniProtKB/TrEMBL
KEGG Report ssc:100155138 UniProtKB/TrEMBL
  ssc:100510930 UniProtKB/TrEMBL
NCBI Gene LOC100510930 ENTREZGENE
PANTHER PTHR11588 UniProtKB/TrEMBL
  TUBULIN ALPHA-3C CHAIN-RELATED UniProtKB/TrEMBL
Pfam Tubulin UniProtKB/TrEMBL
  Tubulin_C UniProtKB/TrEMBL
PRINTS ALPHATUBULIN UniProtKB/TrEMBL
  TUBULIN UniProtKB/TrEMBL
PROSITE TUBULIN UniProtKB/TrEMBL
SMART Tubulin UniProtKB/TrEMBL
  Tubulin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF52490 UniProtKB/TrEMBL
  SSF55307 UniProtKB/TrEMBL
UniProt A0A288CFV7 ENTREZGENE, UniProtKB/TrEMBL
  A0A480KVX2 ENTREZGENE, UniProtKB/TrEMBL
  A0A480VSC2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MNN7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MRN3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0TES9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8X9AEM1 ENTREZGENE, UniProtKB/TrEMBL
  I3LDR2_PIG UniProtKB/TrEMBL